FFCP PHASE1:Hg19::chr20:43029970..43029990,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3172|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5024|TSSclassifier=S|UniProt=P41235,E7ERE7,F1D8T1,F1D8S2|association_with_transcript=46bp_to_ENST00000316099,ENST00000338692,ENST00000415691,ENST00000443598,NM_000457,NM_178849,NM_178850,uc002xly.2,uc002xlz.2,uc002xma.2,uc010ggq.2_5end|coexpression_cluster_id=C304|description=CAGE_peak_4_at_HNF4A_5end|id=chr20:43029970..43029990,+|ontology_enrichment_celltype=CL:0000181!5.05e-15!12;CL:0000417!5.05e-15!12;CL:0000668!5.05e-15!12;CL:0000414!5.05e-15!12;CL:0000412!5.05e-15!12;CL:0000182!5.05e-15!12;CL:0000223!9.73e-07!59|ontology_enrichment_celltype_v019=CL:0000182;1.47e-18;12!CL:0002563;1.73e-09;4|ontology_enrichment_celltype_v019_2=CL:0000182,1.32e-18,12;CL:0002563,2.06e-09,4|ontology_enrichment_development_v019=UBERON:0004161;2.43e-20;11!UBERON:0003104;1.87e-17;31!UBERON:0009497;3.39e-17;13!UBERON:0001041;2.95e-10;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.90e-20!19;UBERON:0006925!1.90e-20!19;UBERON:0008836!1.90e-20!19;UBERON:0009854!2.29e-20!23;UBERON:0000160!1.43e-19!27;UBERON:0009497!1.50e-18!25;UBERON:0000015!1.50e-18!25;UBERON:0002423!1.50e-18!25;UBERON:0006235!1.50e-18!25;UBERON:0004161!1.50e-18!25;UBERON:0004921!2.12e-18!129;UBERON:0004185!2.12e-18!129;UBERON:0009856!8.56e-18!26;UBERON:0005057!1.03e-17!26;UBERON:0008835!1.94e-17!22;UBERON:0003894!1.94e-17!22;UBERON:0000059!4.73e-16!11;UBERON:0001007!8.67e-16!155;UBERON:0001555!8.67e-16!155;UBERON:0007026!8.67e-16!155;UBERON:0003929!3.58e-15!54;UBERON:0007499!3.76e-15!25;UBERON:0005172!6.68e-15!55;UBERON:0005173!6.68e-15!55;UBERON:0005409!9.86e-15!35;UBERON:0004119!5.19e-14!169;UBERON:0000925!5.19e-14!169;UBERON:0006595!5.19e-14!169;UBERON:0001155!7.93e-14!9;UBERON:0002417!3.88e-13!61;UBERON:0000916!3.88e-13!61;UBERON:0002368!1.15e-12!35;UBERON:0005911!5.47e-12!82;UBERON:0002365!6.63e-12!31;UBERON:0002330!6.63e-12!31;UBERON:0000949!1.93e-11!45;UBERON:0005177!1.15e-09!107;UBERON:0004907!1.45e-09!5;UBERON:0000077!1.82e-09!130;UBERON:0002530!3.19e-08!59;UBERON:0009569!8.53e-08!113;UBERON:0000481!4.67e-07!347;UBERON:0001041!5.52e-07!98|ontology_enrichment_uberon_v019=UBERON:0000160;2.95e-37;17!UBERON:0005409;6.59e-29;22!UBERON:0002107;2.60e-22;19!UBERON:0006925;2.60e-22;19!UBERON:0000059;1.44e-19;11!UBERON:0004921;2.68e-18;33!UBERON:0002423;8.72e-17;25!UBERON:0002108;5.93e-16;4!UBERON:0001155;1.42e-15;9!UBERON:0002365;8.65e-13;31!UBERON:0002330;8.65e-13;31!UBERON:0001007;9.89e-13;81!UBERON:0002368;3.96e-11;33!UBERON:0001052;1.25e-09;4!UBERON:0001242;1.73e-09;4!UBERON:0001262;1.73e-09;4!UBERON:0004786;1.73e-09;4!UBERON:0004808;1.73e-09;4!UBERON:0001277;1.73e-09;4!UBERON:0005172;2.48e-08;52!UBERON:0005173;2.48e-08;52!UBERON:0000949;3.33e-08;43!UBERON:0004907;7.12e-08;5!UBERON:0001555;3.79e-07;54!UBERON:0002417;5.92e-07;58!UBERON:0000916;5.92e-07;58|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.29e-37,17;UBERON:0005409,1.64e-25,25;UBERON:0002107,2.22e-22,19;UBERON:0006925,2.22e-22,19;UBERON:0008836,2.22e-22,19;UBERON:0000059,1.33e-19,11;UBERON:0008835,3.12e-19,22;UBERON:0003894,3.12e-19,22;UBERON:0009854,2.30e-18,23;UBERON:0004921,2.47e-18,118;UBERON:0007499,7.74e-17,25;UBERON:0009497,7.74e-17,25;UBERON:0000015,7.74e-17,25;UBERON:0002423,7.74e-17,25;UBERON:0006235,7.74e-17,25;UBERON:0004161,7.74e-17,25;UBERON:0009856,3.67e-16,26;UBERON:0002108,4.14e-16,4;UBERON:0001155,1.34e-15,9;UBERON:0001007,2.08e-14,145;UBERON:0001555,2.08e-14,145;UBERON:0007026,2.08e-14,145;UBERON:0002365,1.96e-13,31;UBERON:0002330,1.96e-13,31;UBERON:0004119,8.53e-13,160;UBERON:0000925,8.53e-13,160;UBERON:0006595,8.53e-13,160;UBERON:0005172,4.93e-12,54;UBERON:0005173,4.93e-12,54;UBERON:0003929,5.66e-12,54;UBERON:0002368,8.21e-12,35;UBERON:0002417,1.06e-10,60;UBERON:0000916,1.06e-10,60;UBERON:0001052,1.28e-09,4;UBERON:0001242,2.06e-09,4;UBERON:0001262,2.06e-09,4;UBERON:0004786,2.06e-09,4;UBERON:0004808,2.06e-09,4;UBERON:0001277,2.06e-09,4;UBERON:0005911,3.59e-09,82;UBERON:0000949,5.16e-09,45;UBERON:0011216,3.23e-08,223;UBERON:0004907,7.25e-08,5;UBERON:0005177,3.44e-07,101|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,8.87285243752816,0,1.77236972004421,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3172 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5024 | |||
|TSSclassifier=S | |||
|UniProt=P41235,E7ERE7,F1D8T1,F1D8S2 | |||
|association_with_transcript=46bp_to_ENST00000316099,ENST00000338692,ENST00000415691,ENST00000443598,NM_000457,NM_178849,NM_178850,uc002xly.2,uc002xlz.2,uc002xma.2,uc010ggq.2_5end | |||
|coexpression_cluster_id=C304 | |||
|description=CAGE_peak_4_at_HNF4A_5end | |||
|id=chr20:43029970..43029990,+ | |||
|ontology_enrichment_celltype=CL:0000181!5.05e-15!12;CL:0000417!5.05e-15!12;CL:0000668!5.05e-15!12;CL:0000414!5.05e-15!12;CL:0000412!5.05e-15!12;CL:0000182!5.05e-15!12;CL:0000223!9.73e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.47e-18;12!CL:0002563;1.73e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.32e-18,12;CL:0002563,2.06e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.43e-20;11!UBERON:0003104;1.87e-17;31!UBERON:0009497;3.39e-17;13!UBERON:0001041;2.95e-10;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.90e-20!19;UBERON:0006925!1.90e-20!19;UBERON:0008836!1.90e-20!19;UBERON:0009854!2.29e-20!23;UBERON:0000160!1.43e-19!27;UBERON:0009497!1.50e-18!25;UBERON:0000015!1.50e-18!25;UBERON:0002423!1.50e-18!25;UBERON:0006235!1.50e-18!25;UBERON:0004161!1.50e-18!25;UBERON:0004921!2.12e-18!129;UBERON:0004185!2.12e-18!129;UBERON:0009856!8.56e-18!26;UBERON:0005057!1.03e-17!26;UBERON:0008835!1.94e-17!22;UBERON:0003894!1.94e-17!22;UBERON:0000059!4.73e-16!11;UBERON:0001007!8.67e-16!155;UBERON:0001555!8.67e-16!155;UBERON:0007026!8.67e-16!155;UBERON:0003929!3.58e-15!54;UBERON:0007499!3.76e-15!25;UBERON:0005172!6.68e-15!55;UBERON:0005173!6.68e-15!55;UBERON:0005409!9.86e-15!35;UBERON:0004119!5.19e-14!169;UBERON:0000925!5.19e-14!169;UBERON:0006595!5.19e-14!169;UBERON:0001155!7.93e-14!9;UBERON:0002417!3.88e-13!61;UBERON:0000916!3.88e-13!61;UBERON:0002368!1.15e-12!35;UBERON:0005911!5.47e-12!82;UBERON:0002365!6.63e-12!31;UBERON:0002330!6.63e-12!31;UBERON:0000949!1.93e-11!45;UBERON:0005177!1.15e-09!107;UBERON:0004907!1.45e-09!5;UBERON:0000077!1.82e-09!130;UBERON:0002530!3.19e-08!59;UBERON:0009569!8.53e-08!113;UBERON:0000481!4.67e-07!347;UBERON:0001041!5.52e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.95e-37;17!UBERON:0005409;6.59e-29;22!UBERON:0002107;2.60e-22;19!UBERON:0006925;2.60e-22;19!UBERON:0000059;1.44e-19;11!UBERON:0004921;2.68e-18;33!UBERON:0002423;8.72e-17;25!UBERON:0002108;5.93e-16;4!UBERON:0001155;1.42e-15;9!UBERON:0002365;8.65e-13;31!UBERON:0002330;8.65e-13;31!UBERON:0001007;9.89e-13;81!UBERON:0002368;3.96e-11;33!UBERON:0001052;1.25e-09;4!UBERON:0001242;1.73e-09;4!UBERON:0001262;1.73e-09;4!UBERON:0004786;1.73e-09;4!UBERON:0004808;1.73e-09;4!UBERON:0001277;1.73e-09;4!UBERON:0005172;2.48e-08;52!UBERON:0005173;2.48e-08;52!UBERON:0000949;3.33e-08;43!UBERON:0004907;7.12e-08;5!UBERON:0001555;3.79e-07;54!UBERON:0002417;5.92e-07;58!UBERON:0000916;5.92e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.29e-37,17;UBERON:0005409,1.64e-25,25;UBERON:0002107,2.22e-22,19;UBERON:0006925,2.22e-22,19;UBERON:0008836,2.22e-22,19;UBERON:0000059,1.33e-19,11;UBERON:0008835,3.12e-19,22;UBERON:0003894,3.12e-19,22;UBERON:0009854,2.30e-18,23;UBERON:0004921,2.47e-18,118;UBERON:0007499,7.74e-17,25;UBERON:0009497,7.74e-17,25;UBERON:0000015,7.74e-17,25;UBERON:0002423,7.74e-17,25;UBERON:0006235,7.74e-17,25;UBERON:0004161,7.74e-17,25;UBERON:0009856,3.67e-16,26;UBERON:0002108,4.14e-16,4;UBERON:0001155,1.34e-15,9;UBERON:0001007,2.08e-14,145;UBERON:0001555,2.08e-14,145;UBERON:0007026,2.08e-14,145;UBERON:0002365,1.96e-13,31;UBERON:0002330,1.96e-13,31;UBERON:0004119,8.53e-13,160;UBERON:0000925,8.53e-13,160;UBERON:0006595,8.53e-13,160;UBERON:0005172,4.93e-12,54;UBERON:0005173,4.93e-12,54;UBERON:0003929,5.66e-12,54;UBERON:0002368,8.21e-12,35;UBERON:0002417,1.06e-10,60;UBERON:0000916,1.06e-10,60;UBERON:0001052,1.28e-09,4;UBERON:0001242,2.06e-09,4;UBERON:0001262,2.06e-09,4;UBERON:0004786,2.06e-09,4;UBERON:0004808,2.06e-09,4;UBERON:0001277,2.06e-09,4;UBERON:0005911,3.59e-09,82;UBERON:0000949,5.16e-09,45;UBERON:0011216,3.23e-08,223;UBERON:0004907,7.25e-08,5;UBERON:0005177,3.44e-07,101 | |||
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|short_description=p4@HNF4A | |||
}} |
Revision as of 08:35, 12 September 2013
Short description: | p4@HNF4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_HNF4A_5end |
Coexpression cluster: | [[Coexpression cluster:C304|]] |
Association with transcript: | 46bp_to_ENST00000316099, ENST00000338692, ENST00000415691, ENST00000443598, NM_000457, NM_178849, NM_178850, uc002xly.2, uc002xlz.2, uc002xma.2, uc010ggq.2_5end |
EntrezGene: | HNF4A |
HGNC: | 5024 |
UniProt: | P41235E7ERE7F1D8T1F1D8S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.32e-18 | 12 |
intestinal epithelial cell | 2.06e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.