FFCP PHASE1:Hg19::chr1:170632762..170632786,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5396|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9142|TSSclassifier=W|UniProt=|association_with_transcript=-260bp_to_ENST00000239461_5end|coexpression_cluster_id=C929|description=CAGE_peak_13_at_PRRX1_5end|id=chr1:170632762..170632786,+|ontology_enrichment_celltype=CL:0000055!1.53e-32!180;CL:0000057!2.84e-24!75;CL:0002620!1.02e-13!23;CL:0000680!8.58e-13!57;CL:0000056!8.58e-13!57;CL:0000355!8.58e-13!57;CL:0000187!1.07e-11!54;CL:0000183!3.70e-10!59;CL:0000393!2.97e-09!60;CL:0000211!2.97e-09!60;CL:0002334!2.01e-08!12;CL:0000048!5.08e-08!430;CL:0000723!2.29e-07!436;CL:0000192!3.26e-07!42;CL:0000514!3.26e-07!42;CL:0000188!6.87e-07!9|ontology_enrichment_celltype_v019=CL:0002620;5.04e-15;23!CL:0002334;2.83e-11;12!CL:0000057;6.27e-11;73!CL:0000499;2.72e-09;28!CL:0000153;4.72e-09;9!CL:0000447;4.72e-09;9!CL:0002556;2.25e-08;6!CL:0002551;5.76e-08;6!CL:0002320;3.66e-07;188!CL:0002552;3.69e-07;5!CL:0000188;7.37e-07;9|ontology_enrichment_celltype_v019_2=CL:0000057,1.62e-27,76;CL:0002620,2.37e-15,23;CL:0000048,2.10e-11,427;CL:0002334,2.38e-11,12;CL:0000723,7.24e-11,433;CL:0000034,3.52e-10,441;CL:0002320,2.04e-09,361;CL:0000134,3.75e-09,354;CL:0000499,3.84e-09,28;CL:0000153,6.23e-09,9;CL:0000447,6.23e-09,9;CL:0002556,1.46e-08,6;CL:0000219,1.76e-08,386;CL:0002551,4.89e-08,6;CL:0002552,1.98e-07,5;CL:0000188,7.66e-07,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.77e-23!83;UBERON:0002329!2.77e-23!83;UBERON:0003077!2.77e-23!83;UBERON:0003059!2.77e-23!83;UBERON:0007282!2.77e-23!83;UBERON:0009618!2.77e-23!83;UBERON:0007285!2.77e-23!83;UBERON:0004290!3.50e-18!70;UBERON:0000486!1.16e-15!82;UBERON:0001134!4.87e-15!61;UBERON:0002036!4.87e-15!61;UBERON:0003082!4.87e-15!61;UBERON:0002385!4.79e-14!63;UBERON:0001015!4.79e-14!63;UBERON:0000383!4.79e-14!63;UBERON:0003102!3.61e-13!95;UBERON:0000475!1.24e-12!365;UBERON:0002199!5.01e-10!45;UBERON:0002416!5.01e-10!45;UBERON:0005256!7.65e-09!143;UBERON:0002097!9.82e-09!40;UBERON:0000468!3.23e-08!659;UBERON:0000479!3.92e-08!787|ontology_enrichment_uberon_v019=UBERON:0002384;1.28e-09;198!UBERON:0001134;1.22e-08;16!UBERON:0002036;1.22e-08;16!UBERON:0001758;2.25e-08;6!UBERON:0003672;2.25e-08;6!UBERON:0002204;1.34e-07;70!UBERON:0002067;4.87e-07;9!UBERON:0003129;4.92e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.95e-11,99;UBERON:0002384,5.80e-10,371;UBERON:0002199,3.72e-09,46;UBERON:0002416,3.72e-09,46;UBERON:0001758,1.46e-08,6;UBERON:0003672,1.46e-08,6;UBERON:0002097,1.63e-08,41;UBERON:0007524,3.27e-08,73;UBERON:0002329,9.75e-08,71;UBERON:0003059,9.75e-08,71;UBERON:0007282,9.75e-08,71;UBERON:0004290,9.75e-08,71;UBERON:0009618,9.75e-08,71;UBERON:0000486,1.14e-07,83;UBERON:0003077,1.57e-07,72;UBERON:0007285,1.57e-07,72;UBERON:0003129,3.44e-07,7;UBERON:0002067,4.38e-07,9;UBERON:0004016,4.38e-07,9;UBERON:0010083,4.38e-07,9;UBERON:0004923,5.92e-07,66|phase1_expression=3.27021082687002,3.42560838225573,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,1.60896258848061,0.994192127183747,0,0.602694528023977,1.46062018077475,0.975865597581014,0,0,0,0.286235987131057,0.136874425072884,0.251085279189606,0.61130724598361,0.903106483949403,1.18066171970519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,3.2529523714611,1.00267582127178,1.30361867064741,3.9764297352555,1.94653948121054,0,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,1.98788780678127,2.91250176828533,1.72131935057184,1.14734648299525,3.90135220418193,0.560677600142307,0,0.49333509683432,0.311211035399766,0.269421344139376,0.326923806226917,0,0.576175924479999,0,3.74592092196385,1.1409436430889,4.03511437489863,1.40921398372518,2.75184005425824,1.96631129383148,1.22492502752936,1.96534907698829,1.85986406116378,10.6920257155385,11.3742787468136,0,0,2.35670559535693,3.503318556415,2.49357703935765,1.75591048352335,1.5324389789951,9.4649977111156,0.226864366320042,2.15267562826634,4.27114777637135,1.27159140695737,0.900273288253207,1.64884046781502,1.28820270022815,1.48893485065272,5.23206629947925,1.75386609290158,0.504867548488229,1.93304787148829,4.36444353410792,1.77504796258307,0.906768884048762,0.508681776931463,0,0,0,0,0,0,0,0,0,0,7.07565032012174,0,0,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.672786506072164,0,2.27348686044945,0.258543431515556,0,1.690605505112,1.59562869950922,1.04007436911366,0.771622122786426,0,0.5328443580321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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-260bp_to_ENST00000239461_5end | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_13_at_PRRX1_5end | |||
|id=chr1:170632762..170632786,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.53e-32!180;CL:0000057!2.84e-24!75;CL:0002620!1.02e-13!23;CL:0000680!8.58e-13!57;CL:0000056!8.58e-13!57;CL:0000355!8.58e-13!57;CL:0000187!1.07e-11!54;CL:0000183!3.70e-10!59;CL:0000393!2.97e-09!60;CL:0000211!2.97e-09!60;CL:0002334!2.01e-08!12;CL:0000048!5.08e-08!430;CL:0000723!2.29e-07!436;CL:0000192!3.26e-07!42;CL:0000514!3.26e-07!42;CL:0000188!6.87e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.04e-15;23!CL:0002334;2.83e-11;12!CL:0000057;6.27e-11;73!CL:0000499;2.72e-09;28!CL:0000153;4.72e-09;9!CL:0000447;4.72e-09;9!CL:0002556;2.25e-08;6!CL:0002551;5.76e-08;6!CL:0002320;3.66e-07;188!CL:0002552;3.69e-07;5!CL:0000188;7.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.62e-27,76;CL:0002620,2.37e-15,23;CL:0000048,2.10e-11,427;CL:0002334,2.38e-11,12;CL:0000723,7.24e-11,433;CL:0000034,3.52e-10,441;CL:0002320,2.04e-09,361;CL:0000134,3.75e-09,354;CL:0000499,3.84e-09,28;CL:0000153,6.23e-09,9;CL:0000447,6.23e-09,9;CL:0002556,1.46e-08,6;CL:0000219,1.76e-08,386;CL:0002551,4.89e-08,6;CL:0002552,1.98e-07,5;CL:0000188,7.66e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.77e-23!83;UBERON:0002329!2.77e-23!83;UBERON:0003077!2.77e-23!83;UBERON:0003059!2.77e-23!83;UBERON:0007282!2.77e-23!83;UBERON:0009618!2.77e-23!83;UBERON:0007285!2.77e-23!83;UBERON:0004290!3.50e-18!70;UBERON:0000486!1.16e-15!82;UBERON:0001134!4.87e-15!61;UBERON:0002036!4.87e-15!61;UBERON:0003082!4.87e-15!61;UBERON:0002385!4.79e-14!63;UBERON:0001015!4.79e-14!63;UBERON:0000383!4.79e-14!63;UBERON:0003102!3.61e-13!95;UBERON:0000475!1.24e-12!365;UBERON:0002199!5.01e-10!45;UBERON:0002416!5.01e-10!45;UBERON:0005256!7.65e-09!143;UBERON:0002097!9.82e-09!40;UBERON:0000468!3.23e-08!659;UBERON:0000479!3.92e-08!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.28e-09;198!UBERON:0001134;1.22e-08;16!UBERON:0002036;1.22e-08;16!UBERON:0001758;2.25e-08;6!UBERON:0003672;2.25e-08;6!UBERON:0002204;1.34e-07;70!UBERON:0002067;4.87e-07;9!UBERON:0003129;4.92e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.95e-11,99;UBERON:0002384,5.80e-10,371;UBERON:0002199,3.72e-09,46;UBERON:0002416,3.72e-09,46;UBERON:0001758,1.46e-08,6;UBERON:0003672,1.46e-08,6;UBERON:0002097,1.63e-08,41;UBERON:0007524,3.27e-08,73;UBERON:0002329,9.75e-08,71;UBERON:0003059,9.75e-08,71;UBERON:0007282,9.75e-08,71;UBERON:0004290,9.75e-08,71;UBERON:0009618,9.75e-08,71;UBERON:0000486,1.14e-07,83;UBERON:0003077,1.57e-07,72;UBERON:0007285,1.57e-07,72;UBERON:0003129,3.44e-07,7;UBERON:0002067,4.38e-07,9;UBERON:0004016,4.38e-07,9;UBERON:0010083,4.38e-07,9;UBERON:0004923,5.92e-07,66 | |||
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| |||
|short_description=p13@PRRX1 | |||
}} |
Revision as of 01:42, 12 September 2013
Short description: | p13@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | -260bp_to_ENST00000239461_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.62e-27 | 76 |
skin fibroblast | 2.37e-15 | 23 |
multi fate stem cell | 2.10e-11 | 427 |
preadipocyte | 2.38e-11 | 12 |
somatic stem cell | 7.24e-11 | 433 |
stem cell | 3.52e-10 | 441 |
connective tissue cell | 2.04e-09 | 361 |
mesenchymal cell | 3.75e-09 | 354 |
stromal cell | 3.84e-09 | 28 |
GAG secreting cell | 6.23e-09 | 9 |
carbohydrate secreting cell | 6.23e-09 | 9 |
fibroblast of periodontium | 1.46e-08 | 6 |
motile cell | 1.76e-08 | 386 |
fibroblast of dermis | 4.89e-08 | 6 |
fibroblast of gingiva | 1.98e-07 | 5 |
cell of skeletal muscle | 7.66e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.95e-11 | 99 |
connective tissue | 5.80e-10 | 371 |
integument | 3.72e-09 | 46 |
integumental system | 3.72e-09 | 46 |
periodontium | 1.46e-08 | 6 |
dentition | 1.46e-08 | 6 |
skin of body | 1.63e-08 | 41 |
dense mesenchyme tissue | 3.27e-08 | 73 |
somite | 9.75e-08 | 71 |
presomitic mesoderm | 9.75e-08 | 71 |
presumptive segmental plate | 9.75e-08 | 71 |
dermomyotome | 9.75e-08 | 71 |
trunk paraxial mesoderm | 9.75e-08 | 71 |
multilaminar epithelium | 1.14e-07 | 83 |
paraxial mesoderm | 1.57e-07 | 72 |
presumptive paraxial mesoderm | 1.57e-07 | 72 |
skull | 3.44e-07 | 7 |
dermis | 4.38e-07 | 9 |
dermatome | 4.38e-07 | 9 |
future dermis | 4.38e-07 | 9 |
organ component layer | 5.92e-07 | 66 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.