FFCP PHASE1:Hg19::chr17:39779227..39779270,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3872|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6427|TSSclassifier=S|UniProt=Q04695|association_with_transcript=0bp_to_EF608069_5end|coexpression_cluster_id=C544|description=CAGE_peak_3_at_KRT17_5end|id=chr17:39779227..39779270,-|ontology_enrichment_celltype=CL:0002076!2.56e-27!43;CL:0000066!2.69e-26!254;CL:0000223!4.76e-19!59;CL:0002368!4.56e-18!13;CL:0002251!7.03e-13!21;CL:0002159!1.26e-11!13;CL:0002202!8.27e-11!9;CL:0002632!8.27e-11!9;CL:0000244!6.32e-09!4;CL:0000731!6.32e-09!4;CL:0002328!1.49e-07!3;CL:0000622!5.10e-07!5;CL:0000068!5.17e-07!3;CL:0000069!5.17e-07!3;CL:0000307!5.17e-07!3;CL:0000377!5.17e-07!3;CL:0002621!8.30e-07!3;CL:0002623!8.30e-07!3|ontology_enrichment_celltype_v019=CL:0002368;3.83e-27;13!CL:0002076;3.98e-23;42!CL:0002159;1.51e-15;14!CL:0002202;1.56e-14;9!CL:0002632;1.56e-14;9!CL:0002328;2.10e-12;3!CL:0000307;1.70e-11;3!CL:0002621;5.29e-11;3!CL:0002251;4.75e-10;20!CL:0000240;1.09e-09;6!CL:0000311;1.09e-09;6!CL:0000079;1.09e-09;6!CL:0000237;1.09e-09;6!CL:0000244;2.92e-09;4!CL:0000731;2.92e-09;4!CL:0000575;1.42e-08;2!CL:0002327;2.47e-08;4!CL:0002077;1.18e-07;34!CL:0000622;2.66e-07;5!CL:0000312;4.15e-07;5!CL:0000362;8.96e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,5.55e-30,42;CL:0000066,8.44e-28,253;CL:0002368,3.89e-27,13;CL:0000223,2.78e-20,58;CL:0002159,1.33e-15,14;CL:0002202,1.71e-14,9;CL:0002632,1.71e-14,9;CL:0002328,2.10e-12,3;CL:0000068,1.96e-11,3;CL:0000069,1.96e-11,3;CL:0000307,1.96e-11,3;CL:0000377,1.96e-11,3;CL:0002621,4.60e-11,3;CL:0002251,4.04e-10,20;CL:0000240,9.74e-10,6;CL:0000311,9.74e-10,6;CL:0000079,9.74e-10,6;CL:0000237,9.74e-10,6;CL:0000036,9.74e-10,6;CL:0000357,9.74e-10,6;CL:0000114,9.74e-10,6;CL:0000244,3.59e-09,4;CL:0000731,3.59e-09,4;CL:0002077,7.10e-09,34;CL:0000575,1.24e-08,2;CL:0002327,2.37e-08,4;CL:0000622,2.27e-07,5;CL:0000312,3.94e-07,5;CL:0000362,8.70e-07,9;CL:0000076,9.45e-07,63|ontology_enrichment_development_v019=CL:0000377;1.70e-11;3!CL:0000223;2.63e-11;58!CL:0000357;1.09e-09;6!CL:0000114;1.09e-09;6!UBERON:0008947;6.61e-08;29|ontology_enrichment_disease=DOID:1749!5.89e-14!14;DOID:305!6.31e-09!106|ontology_enrichment_disease_v019=DOID:1749;1.84e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,2.17e-08,14|ontology_enrichment_uberon=UBERON:0001004!2.83e-25!72;UBERON:0000065!2.81e-21!53;UBERON:0004119!1.56e-17!169;UBERON:0000925!1.56e-17!169;UBERON:0006595!1.56e-17!169;UBERON:0001737!2.05e-16!9;UBERON:0000072!4.34e-16!46;UBERON:0008947!1.90e-15!38;UBERON:0003258!1.90e-15!38;UBERON:0001557!6.54e-14!19;UBERON:0000064!1.95e-11!219;UBERON:0001007!1.26e-10!155;UBERON:0001555!1.26e-10!155;UBERON:0007026!1.26e-10!155;UBERON:0000365!3.99e-10!5;UBERON:0007196!4.02e-10!14;UBERON:0001558!4.02e-10!14;UBERON:0000077!6.67e-10!130;UBERON:0001041!2.38e-09!98;UBERON:0005631!2.57e-09!14;UBERON:0000158!2.57e-09!14;UBERON:0004921!2.29e-08!129;UBERON:0004185!2.29e-08!129;UBERON:0005910!2.40e-08!6;UBERON:0004815!1.49e-07!3;UBERON:0002031!1.49e-07!3;UBERON:0003102!1.57e-07!95;UBERON:0000161!1.90e-07!35;UBERON:0000166!2.52e-07!21;UBERON:0000062!3.93e-07!511;UBERON:0000063!4.14e-07!97;UBERON:0001949!8.30e-07!3;UBERON:0003126!9.45e-07!7;UBERON:0001005!9.45e-07!7|ontology_enrichment_uberon_v019=UBERON:0001737;1.30e-22;9!UBERON:0001557;1.30e-22;9!UBERON:0000065;1.23e-19;44!UBERON:0000072;1.58e-16;37!UBERON:0001004;5.50e-13;65!UBERON:0004815;2.10e-12;3!UBERON:0002031;2.10e-12;3!UBERON:0001949;5.29e-11;3!UBERON:0000486;2.14e-10;12!UBERON:0007196;1.97e-08;15!UBERON:0001558;1.97e-08;15!UBERON:0001911;2.47e-08;4!UBERON:0005911;1.29e-07;36!UBERON:0002185;1.37e-07;5!UBERON:0000365;1.77e-07;5!UBERON:0004807;2.91e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001004,7.62e-24,74;UBERON:0001737,1.07e-22,9;UBERON:0000065,3.23e-19,54;UBERON:0004119,1.54e-17,160;UBERON:0000925,1.54e-17,160;UBERON:0006595,1.54e-17,160;UBERON:0008947,2.28e-17,38;UBERON:0003258,2.28e-17,38;UBERON:0000072,2.27e-13,47;UBERON:0004815,2.10e-12,3;UBERON:0002031,2.10e-12,3;UBERON:0001949,4.60e-11,3;UBERON:0001557,4.33e-10,19;UBERON:0001007,5.32e-09,145;UBERON:0001555,5.32e-09,145;UBERON:0007026,5.32e-09,145;UBERON:0001041,6.99e-09,87;UBERON:0007196,2.08e-08,15;UBERON:0001558,2.08e-08,15;UBERON:0001911,2.37e-08,4;UBERON:0005333,2.37e-08,4;UBERON:0008425,2.37e-08,4;UBERON:0005311,2.37e-08,4;UBERON:0002185,1.38e-07,5;UBERON:0003102,1.61e-07,99;UBERON:0000365,2.08e-07,5;UBERON:0005157,2.80e-07,47;UBERON:0004921,3.68e-07,118|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.43594857135249,6.6265302131215,16.6389304575054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0.709446689665756,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64295288292542,10.7527488407485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3872 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6427 | |||
|TSSclassifier=S | |||
|UniProt=Q04695 | |||
|association_with_transcript=0bp_to_EF608069_5end | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_3_at_KRT17_5end | |||
|id=chr17:39779227..39779270,- | |||
|ontology_enrichment_celltype=CL:0002076!2.56e-27!43;CL:0000066!2.69e-26!254;CL:0000223!4.76e-19!59;CL:0002368!4.56e-18!13;CL:0002251!7.03e-13!21;CL:0002159!1.26e-11!13;CL:0002202!8.27e-11!9;CL:0002632!8.27e-11!9;CL:0000244!6.32e-09!4;CL:0000731!6.32e-09!4;CL:0002328!1.49e-07!3;CL:0000622!5.10e-07!5;CL:0000068!5.17e-07!3;CL:0000069!5.17e-07!3;CL:0000307!5.17e-07!3;CL:0000377!5.17e-07!3;CL:0002621!8.30e-07!3;CL:0002623!8.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.83e-27;13!CL:0002076;3.98e-23;42!CL:0002159;1.51e-15;14!CL:0002202;1.56e-14;9!CL:0002632;1.56e-14;9!CL:0002328;2.10e-12;3!CL:0000307;1.70e-11;3!CL:0002621;5.29e-11;3!CL:0002251;4.75e-10;20!CL:0000240;1.09e-09;6!CL:0000311;1.09e-09;6!CL:0000079;1.09e-09;6!CL:0000237;1.09e-09;6!CL:0000244;2.92e-09;4!CL:0000731;2.92e-09;4!CL:0000575;1.42e-08;2!CL:0002327;2.47e-08;4!CL:0002077;1.18e-07;34!CL:0000622;2.66e-07;5!CL:0000312;4.15e-07;5!CL:0000362;8.96e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.55e-30,42;CL:0000066,8.44e-28,253;CL:0002368,3.89e-27,13;CL:0000223,2.78e-20,58;CL:0002159,1.33e-15,14;CL:0002202,1.71e-14,9;CL:0002632,1.71e-14,9;CL:0002328,2.10e-12,3;CL:0000068,1.96e-11,3;CL:0000069,1.96e-11,3;CL:0000307,1.96e-11,3;CL:0000377,1.96e-11,3;CL:0002621,4.60e-11,3;CL:0002251,4.04e-10,20;CL:0000240,9.74e-10,6;CL:0000311,9.74e-10,6;CL:0000079,9.74e-10,6;CL:0000237,9.74e-10,6;CL:0000036,9.74e-10,6;CL:0000357,9.74e-10,6;CL:0000114,9.74e-10,6;CL:0000244,3.59e-09,4;CL:0000731,3.59e-09,4;CL:0002077,7.10e-09,34;CL:0000575,1.24e-08,2;CL:0002327,2.37e-08,4;CL:0000622,2.27e-07,5;CL:0000312,3.94e-07,5;CL:0000362,8.70e-07,9;CL:0000076,9.45e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000377;1.70e-11;3!CL:0000223;2.63e-11;58!CL:0000357;1.09e-09;6!CL:0000114;1.09e-09;6!UBERON:0008947;6.61e-08;29 | |||
|ontology_enrichment_disease=DOID:1749!5.89e-14!14;DOID:305!6.31e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.84e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.17e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.83e-25!72;UBERON:0000065!2.81e-21!53;UBERON:0004119!1.56e-17!169;UBERON:0000925!1.56e-17!169;UBERON:0006595!1.56e-17!169;UBERON:0001737!2.05e-16!9;UBERON:0000072!4.34e-16!46;UBERON:0008947!1.90e-15!38;UBERON:0003258!1.90e-15!38;UBERON:0001557!6.54e-14!19;UBERON:0000064!1.95e-11!219;UBERON:0001007!1.26e-10!155;UBERON:0001555!1.26e-10!155;UBERON:0007026!1.26e-10!155;UBERON:0000365!3.99e-10!5;UBERON:0007196!4.02e-10!14;UBERON:0001558!4.02e-10!14;UBERON:0000077!6.67e-10!130;UBERON:0001041!2.38e-09!98;UBERON:0005631!2.57e-09!14;UBERON:0000158!2.57e-09!14;UBERON:0004921!2.29e-08!129;UBERON:0004185!2.29e-08!129;UBERON:0005910!2.40e-08!6;UBERON:0004815!1.49e-07!3;UBERON:0002031!1.49e-07!3;UBERON:0003102!1.57e-07!95;UBERON:0000161!1.90e-07!35;UBERON:0000166!2.52e-07!21;UBERON:0000062!3.93e-07!511;UBERON:0000063!4.14e-07!97;UBERON:0001949!8.30e-07!3;UBERON:0003126!9.45e-07!7;UBERON:0001005!9.45e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.30e-22;9!UBERON:0001557;1.30e-22;9!UBERON:0000065;1.23e-19;44!UBERON:0000072;1.58e-16;37!UBERON:0001004;5.50e-13;65!UBERON:0004815;2.10e-12;3!UBERON:0002031;2.10e-12;3!UBERON:0001949;5.29e-11;3!UBERON:0000486;2.14e-10;12!UBERON:0007196;1.97e-08;15!UBERON:0001558;1.97e-08;15!UBERON:0001911;2.47e-08;4!UBERON:0005911;1.29e-07;36!UBERON:0002185;1.37e-07;5!UBERON:0000365;1.77e-07;5!UBERON:0004807;2.91e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,7.62e-24,74;UBERON:0001737,1.07e-22,9;UBERON:0000065,3.23e-19,54;UBERON:0004119,1.54e-17,160;UBERON:0000925,1.54e-17,160;UBERON:0006595,1.54e-17,160;UBERON:0008947,2.28e-17,38;UBERON:0003258,2.28e-17,38;UBERON:0000072,2.27e-13,47;UBERON:0004815,2.10e-12,3;UBERON:0002031,2.10e-12,3;UBERON:0001949,4.60e-11,3;UBERON:0001557,4.33e-10,19;UBERON:0001007,5.32e-09,145;UBERON:0001555,5.32e-09,145;UBERON:0007026,5.32e-09,145;UBERON:0001041,6.99e-09,87;UBERON:0007196,2.08e-08,15;UBERON:0001558,2.08e-08,15;UBERON:0001911,2.37e-08,4;UBERON:0005333,2.37e-08,4;UBERON:0008425,2.37e-08,4;UBERON:0005311,2.37e-08,4;UBERON:0002185,1.38e-07,5;UBERON:0003102,1.61e-07,99;UBERON:0000365,2.08e-07,5;UBERON:0005157,2.80e-07,47;UBERON:0004921,3.68e-07,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.43594857135249,6.6265302131215,16.6389304575054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0.709446689665756,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64295288292542,10.7527488407485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36094052142534,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,1.35282597214308,3.81844568827169,2.29443676311203,0,0,0,0,0,0,0,0.643240938192885,0,0,0,2.24782920075703,1.18009283054671,1.68707720918437,1.7647035637183,0.871517776369625,1.42362371466658,2.02246962240247,2.35465758150415,1.92373578473195,0,0,0,0,0,0,0,0,0,0,6.47526683910891,3.37205259772859,2.41269533787914,1.66659201285353,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74935335947108,1.34385702559088,0.567100388969546,1.88072897675981,1.16253575405585,4.60059214998253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,6.66880657181771,0,3.0239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20810352485256,13.351743395705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0012049207304,0,0,0,0,0,0,0,0,0,2.64455864577565,8.26417289669956,5.48734663726712,17.1968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32999507264804,3.35151137767894,2.17781969722645,0,3.01353760869861,10.1082885400575,12.4160442990269,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.890894042497916,2.15012491469462,0,0,0,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,1.53366118706464,0.0769502585037971,0.227884111694002,0,0,0,0.638002319463839,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07791637155815,1.04471047896483,0,0,0.290268993867255,0.0730893170861856,0.328461828212837,0,0,0,0,0,0.0633107959558787,0,0.240476460754601,0,0.799238438328521,0,0,0,0,0,10.6062315577558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,6.03782437678679,0,0,0,0,4.60596473566669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78554694685953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0,0,0,0,0,0,8.53264997088611,3.11038630016486,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,3.30171477339022,0.577628330751691,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,3.9371071190977,0.6828739083758,3.45629830907046,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21397089490184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.372448285775147,0,0,0,0.870866991587845,0,0,0.215166616178029,0.332660356546013,0.162806537221949,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@KRT17 | |||
}} |
Revision as of 13:37, 11 September 2013
Short description: | p3@KRT17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_KRT17_5end |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | 0bp_to_EF608069_5end |
EntrezGene: | KRT17 |
HGNC: | 6427 |
UniProt: | Q04695 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 7.62e-24 | 74 |
larynx | 1.07e-22 | 9 |
respiratory tract | 3.23e-19 | 54 |
endoderm-derived structure | 1.54e-17 | 160 |
endoderm | 1.54e-17 | 160 |
presumptive endoderm | 1.54e-17 | 160 |
respiratory primordium | 2.28e-17 | 38 |
endoderm of foregut | 2.28e-17 | 38 |
segment of respiratory tract | 2.27e-13 | 47 |
lower respiratory tract epithelium | 2.10e-12 | 3 |
epithelium of bronchus | 2.10e-12 | 3 |
gingival epithelium | 4.60e-11 | 3 |
upper respiratory tract | 4.33e-10 | 19 |
digestive system | 5.32e-09 | 145 |
digestive tract | 5.32e-09 | 145 |
primitive gut | 5.32e-09 | 145 |
foregut | 6.99e-09 | 87 |
tracheobronchial tree | 2.08e-08 | 15 |
lower respiratory tract | 2.08e-08 | 15 |
mammary gland | 2.37e-08 | 4 |
mammary bud | 2.37e-08 | 4 |
mammary ridge | 2.37e-08 | 4 |
mammary placode | 2.37e-08 | 4 |
bronchus | 1.38e-07 | 5 |
surface structure | 1.61e-07 | 99 |
urothelium | 2.08e-07 | 5 |
epithelial fold | 2.80e-07 | 47 |
subdivision of digestive tract | 3.68e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.17e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.