FFCP PHASE1:Hg19::chr15:42696929..42696951,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=825|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1480|TSSclassifier=S|UniProt=Q9BQC8,P20807,A4FTZ9|association_with_transcript=-25bp_to_ENST00000337571,ENST00000397204,NM_173089,NM_173090,uc001zpr.1,uc001zps.1,uc001zpt.1,uc010bcv.1_5end|coexpression_cluster_id=C327|description=CAGE_peak_5_at_CAPN3_5end|id=chr15:42696929..42696951,+|ontology_enrichment_celltype=CL:0000147!4.09e-18!14;CL:0000148!3.56e-16!10;CL:0000541!3.56e-16!10;CL:0002274!1.43e-09!5;CL:0000457!1.43e-09!5;CL:0002191!1.43e-09!5;CL:0000097!1.43e-09!5;CL:0000831!1.43e-09!5;CL:0002028!1.43e-09!5;CL:0000710!8.01e-07!20;CL:0000149!8.82e-07!4|ontology_enrichment_celltype_v019=CL:0000147;1.01e-16;14!CL:0000148;4.49e-16;10!CL:0000097;1.68e-13;5!CL:0002567;7.85e-09;3!CL:0002619;2.74e-07;3!CL:0000163;2.74e-07;9!CL:0000710;2.96e-07;20|ontology_enrichment_celltype_v019_2=CL:0000147,1.11e-16,14;CL:0000148,5.17e-16,10;CL:0000541,5.17e-16,10;CL:0000097,1.68e-13,5;CL:0002028,1.68e-13,5;CL:0002567,8.38e-09,3;CL:0000163,2.74e-07,9;CL:0002619,2.93e-07,3;CL:0000710,3.16e-07,20|ontology_enrichment_development_v019=UBERON:0006601;2.26e-16;82!UBERON:0006241;1.02e-08;3!UBERON:0003057;1.02e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.32e-61!115;UBERON:0001049!1.18e-50!57;UBERON:0005068!1.18e-50!57;UBERON:0006241!1.18e-50!57;UBERON:0007135!1.18e-50!57;UBERON:0005743!8.85e-45!86;UBERON:0003075!1.32e-41!86;UBERON:0007284!1.32e-41!86;UBERON:0002616!5.81e-41!59;UBERON:0000073!6.36e-41!94;UBERON:0001016!6.36e-41!94;UBERON:0001017!3.97e-40!82;UBERON:0002780!4.71e-40!41;UBERON:0001890!4.71e-40!41;UBERON:0006240!4.71e-40!41;UBERON:0002346!5.30e-39!90;UBERON:0003080!7.63e-39!42;UBERON:0000955!5.02e-38!69;UBERON:0006238!5.02e-38!69;UBERON:0001893!3.15e-35!34;UBERON:0002020!3.60e-35!34;UBERON:0003528!3.60e-35!34;UBERON:0002791!1.00e-33!33;UBERON:0001869!6.31e-32!32;UBERON:0003056!3.63e-30!61;UBERON:0002619!1.37e-25!22;UBERON:0000153!1.05e-23!129;UBERON:0007811!1.05e-23!129;UBERON:0000033!1.49e-23!123;UBERON:0001950!7.35e-23!20;UBERON:0000956!7.02e-22!25;UBERON:0000203!7.02e-22!25;UBERON:0004121!1.22e-21!169;UBERON:0000924!1.00e-20!173;UBERON:0006601!1.00e-20!173;UBERON:0002308!1.78e-15!9;UBERON:0000125!1.78e-15!9;UBERON:0002420!4.19e-15!9;UBERON:0007245!4.19e-15!9;UBERON:0010009!4.19e-15!9;UBERON:0010011!4.19e-15!9;UBERON:0000454!4.19e-15!9;UBERON:0000025!1.04e-12!194;UBERON:0003076!1.44e-12!15;UBERON:0003057!1.44e-12!15;UBERON:0009663!2.71e-12!7;UBERON:0002298!4.22e-11!8;UBERON:0000200!2.29e-10!6;UBERON:0004111!2.72e-10!241;UBERON:0001871!4.32e-10!7;UBERON:0000062!6.08e-10!511;UBERON:0004732!6.83e-10!13;UBERON:0000349!1.05e-08!5;UBERON:0000483!1.44e-08!309;UBERON:0004733!2.00e-08!12;UBERON:0002028!2.00e-08!12;UBERON:0007277!2.00e-08!12;UBERON:0000119!2.54e-08!312;UBERON:0000477!1.38e-07!286;UBERON:0000369!2.87e-07!4;UBERON:0002435!2.87e-07!4;UBERON:0000204!2.87e-07!4;UBERON:0010082!2.87e-07!4;UBERON:0000064!4.69e-07!219;UBERON:0000475!5.76e-07!365|ontology_enrichment_uberon_v019=UBERON:0001893;2.67e-45;34!UBERON:0003528;2.29e-44;34!UBERON:0002020;2.29e-44;34!UBERON:0002791;2.61e-43;32!UBERON:0001869;3.74e-43;32!UBERON:0002780;8.56e-43;41!UBERON:0001890;8.56e-43;41!UBERON:0002619;4.47e-38;22!UBERON:0000073;2.09e-37;53!UBERON:0002616;2.09e-37;53!UBERON:0001950;5.49e-34;20!UBERON:0000956;5.07e-33;25!UBERON:0000203;5.07e-33;25!UBERON:0000955;1.25e-24;68!UBERON:0001017;3.52e-24;75!UBERON:0000125;3.04e-22;9!UBERON:0002308;3.04e-22;9!UBERON:0002420;1.16e-21;9!UBERON:0007245;1.16e-21;9!UBERON:0010009;1.16e-21;9!UBERON:0010011;1.16e-21;9!UBERON:0000454;1.16e-21;9!UBERON:0001016;6.51e-19;83!UBERON:0009663;1.67e-17;7!UBERON:0002298;6.00e-16;6!UBERON:0000200;9.89e-15;6!UBERON:0007023;1.86e-14;114!UBERON:0001871;2.61e-12;6!UBERON:0000349;4.07e-12;5!UBERON:0004732;5.09e-12;13!UBERON:0002784;2.43e-10;4!UBERON:0000369;4.94e-10;4!UBERON:0002435;4.94e-10;4!UBERON:0000204;4.94e-10;4!UBERON:0004733;5.94e-10;12!UBERON:0002028;5.94e-10;12!UBERON:0001894;5.82e-09;7!UBERON:0011216;5.97e-09;132!UBERON:0001896;7.55e-09;3!UBERON:0005290;7.55e-09;3!UBERON:0000988;8.59e-09;3!UBERON:0002240;1.02e-08;3!UBERON:0005174;1.02e-08;3!UBERON:0001137;1.02e-08;3!UBERON:0001872;2.22e-08;5!UBERON:0002021;2.72e-08;5!UBERON:0001870;5.28e-08;3!UBERON:0005383;7.52e-08;3!UBERON:0005382;7.52e-08;3!UBERON:0010314;2.35e-07;132!UBERON:0005162;6.69e-07;2!UBERON:0000122;6.69e-07;2!UBERON:0001897;9.16e-07;2!UBERON:0010225;9.16e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.24e-76,56;UBERON:0005068,6.24e-76,56;UBERON:0006241,6.24e-76,56;UBERON:0007135,6.24e-76,56;UBERON:0000073,6.11e-69,53;UBERON:0002616,6.11e-69,53;UBERON:0002780,8.30e-61,41;UBERON:0001890,8.30e-61,41;UBERON:0003080,8.30e-61,41;UBERON:0006240,8.30e-61,41;UBERON:0003075,1.27e-58,82;UBERON:0007284,1.27e-58,82;UBERON:0000955,2.83e-56,68;UBERON:0006238,2.83e-56,68;UBERON:0001017,6.01e-56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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1480 | |||
|TSSclassifier=S | |||
|UniProt=Q9BQC8,P20807,A4FTZ9 | |||
|association_with_transcript=-25bp_to_ENST00000337571,ENST00000397204,NM_173089,NM_173090,uc001zpr.1,uc001zps.1,uc001zpt.1,uc010bcv.1_5end | |||
|coexpression_cluster_id=C327 | |||
|description=CAGE_peak_5_at_CAPN3_5end | |||
|id=chr15:42696929..42696951,+ | |||
|ontology_enrichment_celltype=CL:0000147!4.09e-18!14;CL:0000148!3.56e-16!10;CL:0000541!3.56e-16!10;CL:0002274!1.43e-09!5;CL:0000457!1.43e-09!5;CL:0002191!1.43e-09!5;CL:0000097!1.43e-09!5;CL:0000831!1.43e-09!5;CL:0002028!1.43e-09!5;CL:0000710!8.01e-07!20;CL:0000149!8.82e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.01e-16;14!CL:0000148;4.49e-16;10!CL:0000097;1.68e-13;5!CL:0002567;7.85e-09;3!CL:0002619;2.74e-07;3!CL:0000163;2.74e-07;9!CL:0000710;2.96e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.11e-16,14;CL:0000148,5.17e-16,10;CL:0000541,5.17e-16,10;CL:0000097,1.68e-13,5;CL:0002028,1.68e-13,5;CL:0002567,8.38e-09,3;CL:0000163,2.74e-07,9;CL:0002619,2.93e-07,3;CL:0000710,3.16e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.26e-16;82!UBERON:0006241;1.02e-08;3!UBERON:0003057;1.02e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11957737119962,3.88672399222775,1.54545340580512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.5540919722054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,2.07322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,7.8826118063351,4.49047013467453,25.2940300959742,14.7002352485301,19.4413347476625,17.5889167189308,29.7950971935457,22.2713149699089,3.4214489204541,16.5552263252351,7.80891950394185,26.2960318020132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10320200186223,0.328014645699706,1.62689197332152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0,0,3.97659059106519,6.33012373847307,0,0,0,0.19924798825107,0.552567831062295,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,6.78532922266653,10.9466355830984,0,0,0,0,0,0,0,0,0,0,6.20018970069687,3.49729672013683,0,0.442317039724898,3.25102380848902,2.19385397153973,0,0,0,0,0.46112780877612,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,26.7582497933288,0,13.3530734063443,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,1.7472666824203,0,0,0,0,0,0,0.90392296312213,0,0,6.58432277941138,0,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,16.8117680838741,17.9346046348511,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0.223171457441873,0,0,3.49487848582361,0.315132729228895,0,0.0674035438541849,0.0984274815147488,0,2.38568906942791,6.40156008724405,0.160753148465019,0,0,0,0,5.95345655248642,0,1.73372556058236,1.73100140845494,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,13.7039933743244,13.8844231829824,0,0,0.320362237703084,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,2.65820453990096,6.10131324509816,7.01069211956399,15.4820482836319,9.98361463831671,14.1579798706354,0,0,16.2264555769563,4.85291067026445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28120759293973,0,0,8.9867983498625,0.779441235357554,0.398594520940089,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.80829786022471,5.6678630530234,11.1743701340006,4.92279274177812,0,6.29330997424383,6.45902582527404,31.409272457014,0,0,0,0,0,0,0,0.376051641746286,0,0,0.261906694481422,0,0,8.8474235850097,10.9350933805939,3.9270491335225,9.44895571889212,0,0,0.496211178389294,0,0,1.60710550763486,1.3451348888753,0,0,0,0,0,12.506430867737,6.05109516778212,0,0,0.156986185701028,3.92788974790005,1.12108865325516,0,0,0,3.64530375300947,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.154348316215889,14.6434905537651,0,0,0,19.8271551786095,14.8523200163543,5.9171801861676,0,0,0,0,0,0,0,0,0,22.0742958053235,0,8.29496180329159,0,1.0580536810308,0,0,0,0.252332849670158,0.874124575709564,0,0,0.534434810531121,0.18378979906969,0,0,0,19.9000665470107,23.8930220440978,0.213233981900981,0,0.0645889098360061,0,0,0,0,0.435433495793923,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@CAPN3 | |||
}} |
Revision as of 07:01, 11 September 2013
Short description: | p5@CAPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CAPN3_5end |
Coexpression cluster: | C327_Melanocyte_corpus_thalamus_substantia_melanoma_globus_optic |
Association with transcript: | -25bp_to_ENST00000337571, ENST00000397204, NM_173089, NM_173090, uc001zpr.1, uc001zps.1, uc001zpt.1, uc010bcv.1_5end |
EntrezGene: | CAPN3 |
HGNC: | 1480 |
UniProt: | Q9BQC8P20807A4FTZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.11e-16 | 14 |
melanocyte | 5.17e-16 | 10 |
melanoblast | 5.17e-16 | 10 |
mast cell | 1.68e-13 | 5 |
basophil mast progenitor cell | 1.68e-13 | 5 |
light melanocyte | 8.38e-09 | 3 |
endocrine cell | 2.74e-07 | 9 |
adult endothelial progenitor cell | 2.93e-07 | 3 |
neurecto-epithelial cell | 3.16e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.