FFCP PHASE1:Hg19::chr14:52734384..52734400,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5729|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9591|TSSclassifier=S|UniProt=Q13258|association_with_transcript=-30bp_to_ENST00000306051,NM_000953,uc001wzq.2_5end|description=CAGE_peak_2_at_PTGDR_5end|id=chr14:52734384..52734400,+|ontology_enrichment_celltype=CL:0000791!1.04e-15!18;CL:0000789!1.04e-15!18;CL:0002420!1.04e-15!18;CL:0002419!1.04e-15!18;CL:0000790!1.04e-15!18;CL:0000625!6.84e-14!11;CL:0000084!8.53e-10!25;CL:0000827!8.53e-10!25|ontology_enrichment_celltype_v019=CL:0000625;3.59e-32;11!CL:0000791;2.10e-27;18!CL:0000789;2.10e-27;18!CL:0002419;2.10e-27;18!CL:0000084;5.66e-19;25!CL:0000623;1.53e-12;3!CL:0000542;9.02e-09;53!CL:0000097;2.58e-07;5|ontology_enrichment_celltype_v019_2=CL:0000625,2.24e-32,11;CL:0000791,1.43e-27,18;CL:0000789,1.43e-27,18;CL:0002420,1.43e-27,18;CL:0002419,1.43e-27,18;CL:0000790,1.43e-27,18;CL:0000084,4.32e-19,25;CL:0000827,4.32e-19,25;CL:0000838,6.34e-15,52;CL:0000542,1.43e-14,53;CL:0000051,1.43e-14,53;CL:0000623,1.40e-12,3;CL:0000825,1.40e-12,3;CL:0000893,1.38e-08,2;CL:0002489,1.38e-08,2;CL:0000809,1.38e-08,2;CL:0000808,1.38e-08,2;CL:0000894,1.38e-08,2;CL:0000806,1.38e-08,2;CL:0000807,1.38e-08,2;CL:0000805,1.38e-08,2;CL:0002425,1.38e-08,2;CL:0000097,2.06e-07,5;CL:0002028,2.06e-07,5;CL:0000738,4.84e-07,136;CL:0002031,8.98e-07,120|ontology_enrichment_development_v019=CL:0000790;2.10e-27;18!CL:0000051;9.02e-09;53!CL:0002425;1.48e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.63e-41!115;UBERON:0001049!2.66e-11!57;UBERON:0005068!2.66e-11!57;UBERON:0006241!2.66e-11!57;UBERON:0007135!2.66e-11!57;UBERON:0000178!3.75e-11!15;UBERON:0000179!3.75e-11!15;UBERON:0000463!3.75e-11!15;UBERON:0003075!1.08e-09!86;UBERON:0007284!1.08e-09!86;UBERON:0002346!8.67e-09!90;UBERON:0002616!6.48e-08!59;UBERON:0001017!1.15e-07!82;UBERON:0005743!1.34e-07!86;UBERON:0003080!5.04e-07!42|ontology_enrichment_uberon_v019=UBERON:0000178;5.52e-27;15!UBERON:0000179;5.52e-27;15!UBERON:0000463;5.52e-27;15!UBERON:0002390;8.03e-11;32!UBERON:0002360;4.43e-09;2!UBERON:0000094;4.43e-09;2!UBERON:0010743;4.43e-09;2!UBERON:0000059;8.85e-09;11!UBERON:0002193;1.92e-07;42!UBERON:0000160;3.65e-07;17!UBERON:0001155;4.35e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.83e-27,15;UBERON:0000179,3.83e-27,15;UBERON:0000463,3.83e-27,15;UBERON:0007023,5.34e-14,114;UBERON:0002360,4.53e-09,2;UBERON:0000094,4.53e-09,2;UBERON:0010743,4.53e-09,2;UBERON:0000059,8.18e-09,11;UBERON:0000160,3.72e-07,17;UBERON:0001155,4.03e-07,9|phase1_expression=0.908391896352783,0.642301571672949,0.704772020479856,0,1.34088328328186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0.767658796194425,0.77408061658038,0,0,0,0,0,0,0.553995408531877,0,0.651032612147555,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.263384084775077,0.196709770113833,0.786021525498329,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0.552700035571697,0.289803085735052,0,0,0,0.339928028092699,1.53288197440768,0.34362744548263,0.759059076058509,2.86708872891687,1.30216690771284,1.90090408889675,1.6563263098555,2.04778577847069,6.24653632761729,2.60454977248419,5.74789597844733,1.41124720257313,1.60464117470104,0.289648807765598,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0,0.087834785693126,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352193736052904,2.28060927094849,2.45003920808834,1.8936365013957,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,1.43833425785268,0.358121926479791,4.37132061574756,2.56139988262505,3.23441362289276,4.49200626979119,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,1.03384013061444,1.72571360654893,0.853820462427555,0,0,0,0,0.153461973288062,0.561320188866147,0.256278298511402,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0,0.15350367472613,0,0.107420244868274,0.290033387828457,0.255679882248303,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0.354761064070598,0.844430541190656,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.52234282769651,1.52927441428475,1.70894156152249,2.62054953003568,1.23408681925858,1.94541993357815,2.160125748952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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5729 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9591 | |||
|TSSclassifier=S | |||
|UniProt=Q13258 | |||
|association_with_transcript=-30bp_to_ENST00000306051,NM_000953,uc001wzq.2_5end | |||
|description=CAGE_peak_2_at_PTGDR_5end | |||
|id=chr14:52734384..52734400,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.04e-15!18;CL:0000789!1.04e-15!18;CL:0002420!1.04e-15!18;CL:0002419!1.04e-15!18;CL:0000790!1.04e-15!18;CL:0000625!6.84e-14!11;CL:0000084!8.53e-10!25;CL:0000827!8.53e-10!25 | |||
|ontology_enrichment_celltype_v019=CL:0000625;3.59e-32;11!CL:0000791;2.10e-27;18!CL:0000789;2.10e-27;18!CL:0002419;2.10e-27;18!CL:0000084;5.66e-19;25!CL:0000623;1.53e-12;3!CL:0000542;9.02e-09;53!CL:0000097;2.58e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,2.24e-32,11;CL:0000791,1.43e-27,18;CL:0000789,1.43e-27,18;CL:0002420,1.43e-27,18;CL:0002419,1.43e-27,18;CL:0000790,1.43e-27,18;CL:0000084,4.32e-19,25;CL:0000827,4.32e-19,25;CL:0000838,6.34e-15,52;CL:0000542,1.43e-14,53;CL:0000051,1.43e-14,53;CL:0000623,1.40e-12,3;CL:0000825,1.40e-12,3;CL:0000893,1.38e-08,2;CL:0002489,1.38e-08,2;CL:0000809,1.38e-08,2;CL:0000808,1.38e-08,2;CL:0000894,1.38e-08,2;CL:0000806,1.38e-08,2;CL:0000807,1.38e-08,2;CL:0000805,1.38e-08,2;CL:0002425,1.38e-08,2;CL:0000097,2.06e-07,5;CL:0002028,2.06e-07,5;CL:0000738,4.84e-07,136;CL:0002031,8.98e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.10e-27;18!CL:0000051;9.02e-09;53!CL:0002425;1.48e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.63e-41!115;UBERON:0001049!2.66e-11!57;UBERON:0005068!2.66e-11!57;UBERON:0006241!2.66e-11!57;UBERON:0007135!2.66e-11!57;UBERON:0000178!3.75e-11!15;UBERON:0000179!3.75e-11!15;UBERON:0000463!3.75e-11!15;UBERON:0003075!1.08e-09!86;UBERON:0007284!1.08e-09!86;UBERON:0002346!8.67e-09!90;UBERON:0002616!6.48e-08!59;UBERON:0001017!1.15e-07!82;UBERON:0005743!1.34e-07!86;UBERON:0003080!5.04e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.52e-27;15!UBERON:0000179;5.52e-27;15!UBERON:0000463;5.52e-27;15!UBERON:0002390;8.03e-11;32!UBERON:0002360;4.43e-09;2!UBERON:0000094;4.43e-09;2!UBERON:0010743;4.43e-09;2!UBERON:0000059;8.85e-09;11!UBERON:0002193;1.92e-07;42!UBERON:0000160;3.65e-07;17!UBERON:0001155;4.35e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.83e-27,15;UBERON:0000179,3.83e-27,15;UBERON:0000463,3.83e-27,15;UBERON:0007023,5.34e-14,114;UBERON:0002360,4.53e-09,2;UBERON:0000094,4.53e-09,2;UBERON:0010743,4.53e-09,2;UBERON:0000059,8.18e-09,11;UBERON:0000160,3.72e-07,17;UBERON:0001155,4.03e-07,9 | |||
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|short_description=p2@PTGDR | |||
}} |
Revision as of 04:45, 11 September 2013
Short description: | p2@PTGDR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PTGDR_5end |
Coexpression cluster: | NA |
Association with transcript: | -30bp_to_ENST00000306051, NM_000953, uc001wzq.2_5end |
EntrezGene: | PTGDR |
HGNC: | 9591 |
UniProt: | Q13258 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 2.24e-32 | 11 |
mature alpha-beta T cell | 1.43e-27 | 18 |
alpha-beta T cell | 1.43e-27 | 18 |
immature T cell | 1.43e-27 | 18 |
mature T cell | 1.43e-27 | 18 |
immature alpha-beta T cell | 1.43e-27 | 18 |
T cell | 4.32e-19 | 25 |
pro-T cell | 4.32e-19 | 25 |
lymphoid lineage restricted progenitor cell | 6.34e-15 | 52 |
lymphocyte | 1.43e-14 | 53 |
common lymphoid progenitor | 1.43e-14 | 53 |
natural killer cell | 1.40e-12 | 3 |
pro-NK cell | 1.40e-12 | 3 |
thymocyte | 1.38e-08 | 2 |
double negative thymocyte | 1.38e-08 | 2 |
double-positive, alpha-beta thymocyte | 1.38e-08 | 2 |
DN4 thymocyte | 1.38e-08 | 2 |
DN1 thymic pro-T cell | 1.38e-08 | 2 |
DN2 thymocyte | 1.38e-08 | 2 |
DN3 thymocyte | 1.38e-08 | 2 |
immature single positive thymocyte | 1.38e-08 | 2 |
early T lineage precursor | 1.38e-08 | 2 |
mast cell | 2.06e-07 | 5 |
basophil mast progenitor cell | 2.06e-07 | 5 |
leukocyte | 4.84e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 8.98e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 3.83e-27 | 15 |
haemolymphatic fluid | 3.83e-27 | 15 |
organism substance | 3.83e-27 | 15 |
adult organism | 5.34e-14 | 114 |
meninx | 4.53e-09 | 2 |
membrane organ | 4.53e-09 | 2 |
meningeal cluster | 4.53e-09 | 2 |
large intestine | 8.18e-09 | 11 |
intestine | 3.72e-07 | 17 |
colon | 4.03e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.