FFCP PHASE1:Hg19::chr13:75900519..75900574,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9882|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19165|TSSclassifier=N|UniProt=|association_with_transcript=-133bp_to_ENST00000488955_5end|coexpression_cluster_id=C152|description=CAGE_peak_10_at_TBC1D4_5end|id=chr13:75900519..75900574,-|ontology_enrichment_celltype=CL:0000791!3.14e-14!18;CL:0000789!3.14e-14!18;CL:0002420!3.14e-14!18;CL:0002419!3.14e-14!18;CL:0000790!3.14e-14!18;CL:0000084!6.13e-13!25;CL:0000827!6.13e-13!25;CL:0002139!6.18e-10!24;CL:0000115!2.38e-09!35;CL:0000838!5.63e-09!52;CL:0000625!5.71e-09!11;CL:0000542!1.18e-08!53;CL:0000051!1.18e-08!53;CL:0000624!3.00e-08!6;CL:0000738!3.86e-08!140;CL:0002078!6.01e-08!44;CL:0002087!1.71e-07!119;CL:0000037!3.23e-07!172;CL:0000566!3.23e-07!172;CL:0002031!4.61e-07!124;CL:0005020!5.84e-07!6;CL:0002138!5.84e-07!6;CL:0005022!5.84e-07!6;CL:0000988!7.12e-07!182|ontology_enrichment_celltype_v019=CL:0000624;2.24e-20;6!CL:0000791;6.99e-14;18!CL:0000789;6.99e-14;18!CL:0002419;6.99e-14;18!CL:0000084;6.43e-12;25!CL:0002188;5.20e-11;5!CL:0000898;5.79e-11;3!CL:0000815;5.02e-08;2!CL:0000792;5.02e-08;2!CL:0002677;5.02e-08;2!CL:1000746;7.02e-08;7!CL:1000612;7.02e-08;7|ontology_enrichment_celltype_v019_2=CL:0000624,9.57e-21,6;CL:0000791,5.99e-14,18;CL:0000789,5.99e-14,18;CL:0002420,5.99e-14,18;CL:0002419,5.99e-14,18;CL:0000790,5.99e-14,18;CL:0000084,5.84e-12,25;CL:0000827,5.84e-12,25;CL:0000898,2.36e-11,3;CL:0002188,6.13e-11,5;CL:0000838,2.50e-08,52;CL:0000815,3.41e-08,2;CL:0000792,3.41e-08,2;CL:0002677,3.41e-08,2;CL:0000542,4.05e-08,53;CL:0000051,4.05e-08,53;CL:1000746,7.88e-08,7;CL:1000612,7.88e-08,7;CL:0002031,1.81e-07,120;CL:0002032,3.89e-07,161;CL:0000837,3.89e-07,161;CL:0002087,4.35e-07,115;CL:0000738,8.10e-07,136|ontology_enrichment_development_v019=CL:0000790;6.99e-14;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000074;7.02e-08;7!UBERON:0001229;7.02e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0003887,6.99e-10,12;UBERON:0010532,7.88e-08,7;UBERON:0000074,7.88e-08,7;UBERON:0001229,7.88e-08,7;UBERON:0001230,7.88e-08,7;UBERON:0003220,7.88e-08,7;UBERON:0005749,7.88e-08,7;UBERON:0004199,7.88e-08,7;UBERON:0004209,7.88e-08,7;UBERON:0004198,7.88e-08,7;UBERON:0005103,7.43e-07,8;UBERON:0000083,7.43e-07,8;UBERON:0009201,7.43e-07,8;UBERON:0006553,7.43e-07,8;UBERON:0003074,7.43e-07,8;UBERON:0003060,7.43e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0,0,0,0.727752183563449,0.464858073811369,0,1.54853185447552,0.575384784644301,0,2.83778675866302,0,0,0,0.188242339542605,0,1.12361742222542,0,0,0.639337125799041,0,0,2.13112375266347,0,0.56738522469114,6.85104473895132,0,0,1.52032191293582,0,0,5.37986058649504,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,2.75393678159366,1.17903228824749,2.67281948699362,3.67810289859492,1.62961133316795,1.89379122293893,0,1.44833593950726,3.53527088969805,4.43067789167242,3.24964636518019,1.79327847615945,2.47112760363769,0.986627427622057,0.552700035571697,1.44901542867526,1.33457906845854,2.40786745280742,1.04535523804977,1.13309342697566,1.91610246800961,3.4362744548263,2.27717722817553,0.637130828648193,0.651083453856419,0,0.903450714466637,2.17577238962511,1.24930726552346,1.18388626022008,0.821127996921047,0.201606743224732,0.802320587350522,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0.571994910780128,0,0.993812036833525,0,0,0.56530794192401,0.419499436209906,0,0,0.516833518338658,0.71153252537342,0.33472061276467,2.01414658554573,5.32190474002959,0.976248230192678,0.735326160691737,0,0.982297011124877,0.673588117878509,0.788280363383256,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0.326923806226917,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,1.87676382089396,1.38895653772983,2.47330397904978,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0.788123040807709,1.2937654491571,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,1.13733384070897,1.19065593693561,2.80690690932781,1.54227252690289,0.270946437543853,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9882 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19165 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-133bp_to_ENST00000488955_5end | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_10_at_TBC1D4_5end | |||
|id=chr13:75900519..75900574,- | |||
|ontology_enrichment_celltype=CL:0000791!3.14e-14!18;CL:0000789!3.14e-14!18;CL:0002420!3.14e-14!18;CL:0002419!3.14e-14!18;CL:0000790!3.14e-14!18;CL:0000084!6.13e-13!25;CL:0000827!6.13e-13!25;CL:0002139!6.18e-10!24;CL:0000115!2.38e-09!35;CL:0000838!5.63e-09!52;CL:0000625!5.71e-09!11;CL:0000542!1.18e-08!53;CL:0000051!1.18e-08!53;CL:0000624!3.00e-08!6;CL:0000738!3.86e-08!140;CL:0002078!6.01e-08!44;CL:0002087!1.71e-07!119;CL:0000037!3.23e-07!172;CL:0000566!3.23e-07!172;CL:0002031!4.61e-07!124;CL:0005020!5.84e-07!6;CL:0002138!5.84e-07!6;CL:0005022!5.84e-07!6;CL:0000988!7.12e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.24e-20;6!CL:0000791;6.99e-14;18!CL:0000789;6.99e-14;18!CL:0002419;6.99e-14;18!CL:0000084;6.43e-12;25!CL:0002188;5.20e-11;5!CL:0000898;5.79e-11;3!CL:0000815;5.02e-08;2!CL:0000792;5.02e-08;2!CL:0002677;5.02e-08;2!CL:1000746;7.02e-08;7!CL:1000612;7.02e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,9.57e-21,6;CL:0000791,5.99e-14,18;CL:0000789,5.99e-14,18;CL:0002420,5.99e-14,18;CL:0002419,5.99e-14,18;CL:0000790,5.99e-14,18;CL:0000084,5.84e-12,25;CL:0000827,5.84e-12,25;CL:0000898,2.36e-11,3;CL:0002188,6.13e-11,5;CL:0000838,2.50e-08,52;CL:0000815,3.41e-08,2;CL:0000792,3.41e-08,2;CL:0002677,3.41e-08,2;CL:0000542,4.05e-08,53;CL:0000051,4.05e-08,53;CL:1000746,7.88e-08,7;CL:1000612,7.88e-08,7;CL:0002031,1.81e-07,120;CL:0002032,3.89e-07,161;CL:0000837,3.89e-07,161;CL:0002087,4.35e-07,115;CL:0000738,8.10e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;6.99e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;7.02e-08;7!UBERON:0001229;7.02e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003887,6.99e-10,12;UBERON:0010532,7.88e-08,7;UBERON:0000074,7.88e-08,7;UBERON:0001229,7.88e-08,7;UBERON:0001230,7.88e-08,7;UBERON:0003220,7.88e-08,7;UBERON:0005749,7.88e-08,7;UBERON:0004199,7.88e-08,7;UBERON:0004209,7.88e-08,7;UBERON:0004198,7.88e-08,7;UBERON:0005103,7.43e-07,8;UBERON:0000083,7.43e-07,8;UBERON:0009201,7.43e-07,8;UBERON:0006553,7.43e-07,8;UBERON:0003074,7.43e-07,8;UBERON:0003060,7.43e-07,8 | |||
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| |||
|short_description=p10@TBC1D4 | |||
}} |
Revision as of 02:46, 11 September 2013
Short description: | p10@TBC1D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_TBC1D4_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -133bp_to_ENST00000488955_5end |
EntrezGene: | TBC1D4 |
HGNC: | 19165 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 9.57e-21 | 6 |
mature alpha-beta T cell | 5.99e-14 | 18 |
alpha-beta T cell | 5.99e-14 | 18 |
immature T cell | 5.99e-14 | 18 |
mature T cell | 5.99e-14 | 18 |
immature alpha-beta T cell | 5.99e-14 | 18 |
T cell | 5.84e-12 | 25 |
pro-T cell | 5.84e-12 | 25 |
naive T cell | 2.36e-11 | 3 |
glomerular endothelial cell | 6.13e-11 | 5 |
lymphoid lineage restricted progenitor cell | 2.50e-08 | 52 |
regulatory T cell | 3.41e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.41e-08 | 2 |
naive regulatory T cell | 3.41e-08 | 2 |
lymphocyte | 4.05e-08 | 53 |
common lymphoid progenitor | 4.05e-08 | 53 |
glomerular cell | 7.88e-08 | 7 |
kidney corpuscule cell | 7.88e-08 | 7 |
hematopoietic lineage restricted progenitor cell | 1.81e-07 | 120 |
hematopoietic oligopotent progenitor cell | 3.89e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.89e-07 | 161 |
nongranular leukocyte | 4.35e-07 | 115 |
leukocyte | 8.10e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
intraembryonic coelom | 6.99e-10 | 12 |
primitive nephron | 7.88e-08 | 7 |
renal glomerulus | 7.88e-08 | 7 |
renal corpuscle | 7.88e-08 | 7 |
glomerular capsule | 7.88e-08 | 7 |
metanephric mesenchyme | 7.88e-08 | 7 |
glomerular tuft | 7.88e-08 | 7 |
S-shaped body | 7.88e-08 | 7 |
renal vesicle | 7.88e-08 | 7 |
comma-shaped body | 7.88e-08 | 7 |
mesonephric epithelium | 7.43e-07 | 8 |
mesonephric tubule | 7.43e-07 | 8 |
nephric duct | 7.43e-07 | 8 |
renal duct | 7.43e-07 | 8 |
mesonephric duct | 7.43e-07 | 8 |
pronephric duct | 7.43e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.