FFCP PHASE1:Hg19::chr12:64784360..64784378,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=115749|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26967|TSSclassifier=S|UniProt=Q8IXR9|association_with_transcript=-15bp_to_ENST00000433716,NM_001099676,NM_001170633,uc001ssa.3_5end|coexpression_cluster_id=C1|description=CAGE_peak_4_at_C12orf56_5end|id=chr12:64784360..64784378,-|ontology_enrichment_celltype=CL:0000515!3.94e-07!4;CL:0002583!5.76e-07!2|ontology_enrichment_celltype_v019=CL:0002573;7.92e-25;2!CL:0000313;2.97e-19;1!CL:0000123;2.60e-10;2!CL:0000159;2.60e-10;2!CL:0000242;2.60e-10;2!CL:0000095;3.88e-09;17|ontology_enrichment_celltype_v019_2=CL:0002573,1.29e-24,2;CL:0000313,5.62e-19,1;CL:0000242,1.89e-10,2;CL:0000159,3.58e-10,2;CL:0000095,3.94e-09,17;CL:0000123,3.94e-09,17|ontology_enrichment_development_v019=UBERON:0009117;4.59e-17;10!UBERON:0005564;4.59e-17;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2152;2.97e-19;1|ontology_enrichment_disease_v019_2=DOID:2152,5.62e-19,1|ontology_enrichment_uberon=UBERON:0002075!2.98e-09!18;UBERON:0001264!1.66e-07!10;UBERON:0003922!1.66e-07!10;UBERON:0003923!1.66e-07!10;UBERON:0003924!1.66e-07!10;UBERON:0003921!1.66e-07!10;UBERON:0002323!5.41e-07!46;UBERON:0001045!8.70e-07!11|ontology_enrichment_uberon_v019=UBERON:0002370;5.18e-37;2!UBERON:0005058;5.18e-37;2!UBERON:0009113;5.18e-37;2!UBERON:0004911;2.97e-19;1!UBERON:0004177;1.81e-15;5!UBERON:0005057;1.81e-15;5!UBERON:0004909;2.60e-10;2!UBERON:0000473;3.52e-10;8!UBERON:0000010;6.10e-09;8!UBERON:0000991;1.87e-08;21!UBERON:0001264;3.89e-08;10!UBERON:0003135;1.20e-07;11!UBERON:0002323;1.85e-07;45!UBERON:0002553;2.69e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.57e-19,4;UBERON:0005058,3.57e-19,4;UBERON:0009113,3.57e-19,4;UBERON:0003295,3.57e-19,4;UBERON:0005562,3.57e-19,4;UBERON:0004911,5.62e-19,1;UBERON:0003351,4.01e-13,6;UBERON:0004177,2.18e-11,7;UBERON:0005057,2.18e-11,7;UBERON:0000473,3.52e-10,8;UBERON:0004909,3.58e-10,2;UBERON:0002323,6.53e-10,46;UBERON:0004458,2.62e-09,49;UBERON:0000010,7.16e-09,8;UBERON:0003886,1.89e-08,54;UBERON:0000991,2.05e-08,21;UBERON:0009196,2.05e-08,21;UBERON:0009117,2.05e-08,21;UBERON:0005564,2.05e-08,21;UBERON:0000974,3.03e-08,10;UBERON:0003408,3.03e-08,10;UBERON:0001042,3.03e-08,10;UBERON:0009145,3.03e-08,10;UBERON:0001264,3.90e-08,10;UBERON:0004176,4.66e-08,22;UBERON:0003135,1.20e-07,11;UBERON:0006562,1.42e-07,11;UBERON:0009722,1.42e-07,11;UBERON:0007690,1.42e-07,11;UBERON:0002553,1.76e-07,61;UBERON:0000949,9.49e-07,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0.506328996723799,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.328508624055237,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591095237907095,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,1.32930774541437,0.330991955875499,1.56966459203613,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.739202355635845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87333962322753,0,0,0,0.554805861502613,0,0,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,1.30165200803622,1.19298766662821,0,0,0,0,1.00669888618013,0,0,0,0,0,0,0.467878926924211,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0.801652215796681,0,0,3.63737751447549,6.16317499359211,0,0,0,0,2.32520075409622,1.86224142887574,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0.402547587182052,0|short_description=p4@C12orf56}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=115749 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26967 | |||
|TSSclassifier=S | |||
|UniProt=Q8IXR9 | |||
|association_with_transcript=-15bp_to_ENST00000433716,NM_001099676,NM_001170633,uc001ssa.3_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_C12orf56_5end | |||
|id=chr12:64784360..64784378,- | |||
|ontology_enrichment_celltype=CL:0000515!3.94e-07!4;CL:0002583!5.76e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002573;7.92e-25;2!CL:0000313;2.97e-19;1!CL:0000123;2.60e-10;2!CL:0000159;2.60e-10;2!CL:0000242;2.60e-10;2!CL:0000095;3.88e-09;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,1.29e-24,2;CL:0000313,5.62e-19,1;CL:0000242,1.89e-10,2;CL:0000159,3.58e-10,2;CL:0000095,3.94e-09,17;CL:0000123,3.94e-09,17 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.59e-17;10!UBERON:0005564;4.59e-17;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2152;2.97e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,5.62e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0002075!2.98e-09!18;UBERON:0001264!1.66e-07!10;UBERON:0003922!1.66e-07!10;UBERON:0003923!1.66e-07!10;UBERON:0003924!1.66e-07!10;UBERON:0003921!1.66e-07!10;UBERON:0002323!5.41e-07!46;UBERON:0001045!8.70e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.18e-37;2!UBERON:0005058;5.18e-37;2!UBERON:0009113;5.18e-37;2!UBERON:0004911;2.97e-19;1!UBERON:0004177;1.81e-15;5!UBERON:0005057;1.81e-15;5!UBERON:0004909;2.60e-10;2!UBERON:0000473;3.52e-10;8!UBERON:0000010;6.10e-09;8!UBERON:0000991;1.87e-08;21!UBERON:0001264;3.89e-08;10!UBERON:0003135;1.20e-07;11!UBERON:0002323;1.85e-07;45!UBERON:0002553;2.69e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.57e-19,4;UBERON:0005058,3.57e-19,4;UBERON:0009113,3.57e-19,4;UBERON:0003295,3.57e-19,4;UBERON:0005562,3.57e-19,4;UBERON:0004911,5.62e-19,1;UBERON:0003351,4.01e-13,6;UBERON:0004177,2.18e-11,7;UBERON:0005057,2.18e-11,7;UBERON:0000473,3.52e-10,8;UBERON:0004909,3.58e-10,2;UBERON:0002323,6.53e-10,46;UBERON:0004458,2.62e-09,49;UBERON:0000010,7.16e-09,8;UBERON:0003886,1.89e-08,54;UBERON:0000991,2.05e-08,21;UBERON:0009196,2.05e-08,21;UBERON:0009117,2.05e-08,21;UBERON:0005564,2.05e-08,21;UBERON:0000974,3.03e-08,10;UBERON:0003408,3.03e-08,10;UBERON:0001042,3.03e-08,10;UBERON:0009145,3.03e-08,10;UBERON:0001264,3.90e-08,10;UBERON:0004176,4.66e-08,22;UBERON:0003135,1.20e-07,11;UBERON:0006562,1.42e-07,11;UBERON:0009722,1.42e-07,11;UBERON:0007690,1.42e-07,11;UBERON:0002553,1.76e-07,61;UBERON:0000949,9.49e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0.506328996723799,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.328508624055237,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591095237907095,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,1.32930774541437,0.330991955875499,1.56966459203613,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.739202355635845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87333962322753,0,0,0,0.554805861502613,0,0,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,1.30165200803622,1.19298766662821,0,0,0,0,1.00669888618013,0,0,0,0,0,0,0.467878926924211,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0.801652215796681,0,0,3.63737751447549,6.16317499359211,0,0,0,0,2.32520075409622,1.86224142887574,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0.402547587182052,0 | |||
|short_description=p4@C12orf56 | |||
}} |
Revision as of 23:53, 10 September 2013
Short description: | p4@C12orf56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_C12orf56_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -15bp_to_ENST00000433716, NM_001099676, NM_001170633, uc001ssa.3_5end |
EntrezGene: | C12orf56 |
HGNC: | 26967 |
UniProt: | Q8IXR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 1.29e-24 | 2 |
serous secreting cell | 5.62e-19 | 1 |
Merkel cell | 1.89e-10 | 2 |
seromucus secreting cell | 3.58e-10 | 2 |
neuron associated cell | 3.94e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 3.94e-09 | 17 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.57e-19 | 4 |
hemolymphoid system gland | 3.57e-19 | 4 |
thymic region | 3.57e-19 | 4 |
pharyngeal gland | 3.57e-19 | 4 |
thymus primordium | 3.57e-19 | 4 |
epithelium of female gonad | 5.62e-19 | 1 |
pharyngeal epithelium | 4.01e-13 | 6 |
hemopoietic organ | 2.18e-11 | 7 |
immune organ | 2.18e-11 | 7 |
testis | 3.52e-10 | 8 |
epithelium of gonad | 3.58e-10 | 2 |
body cavity | 6.53e-10 | 46 |
body cavity or lining | 2.62e-09 | 49 |
peripheral nervous system | 7.16e-09 | 8 |
body cavity precursor | 1.89e-08 | 54 |
gonad | 2.05e-08 | 21 |
indifferent external genitalia | 2.05e-08 | 21 |
indifferent gonad | 2.05e-08 | 21 |
gonad primordium | 2.05e-08 | 21 |
neck | 3.03e-08 | 10 |
gland of gut | 3.03e-08 | 10 |
chordate pharynx | 3.03e-08 | 10 |
pharyngeal region of foregut | 3.03e-08 | 10 |
pancreas | 3.90e-08 | 10 |
external genitalia | 4.66e-08 | 22 |
male reproductive organ | 1.20e-07 | 11 |
pharynx | 1.42e-07 | 11 |
entire pharyngeal arch endoderm | 1.42e-07 | 11 |
early pharyngeal endoderm | 1.42e-07 | 11 |
anatomical cavity | 1.76e-07 | 61 |
endocrine system | 9.49e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 5.62e-19 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.