FFCP PHASE1:Hg19::chr12:47197427..47197443,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55089|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=14679|TSSclassifier=S|UniProt=Q969I6|association_with_transcript=89bp_to_BC069819_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_SLC38A4_5end|id=chr12:47197427..47197443,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000182;9.93e-11;12|ontology_enrichment_celltype_v019_2=CL:0000182,9.93e-11,12|ontology_enrichment_development_v019=UBERON:0003104;4.83e-07;31|ontology_enrichment_disease=DOID:114!1.64e-13!2;DOID:178!1.48e-07!1;DOID:326!1.48e-07!1;DOID:3978!1.48e-07!1;DOID:3394!1.48e-07!1;DOID:5844!1.48e-07!1;DOID:1287!3.49e-07!4|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003127!2.24e-13!2;UBERON:0005057!1.59e-08!26;UBERON:0002107!1.61e-08!19;UBERON:0006925!1.61e-08!19;UBERON:0008836!1.61e-08!19;UBERON:0005418!8.28e-08!1;UBERON:0001389!8.28e-08!1;UBERON:0000026!8.28e-08!1;UBERON:0008784!8.28e-08!1;UBERON:0006058!8.28e-08!1;UBERON:0003663!8.28e-08!1;UBERON:0001383!8.28e-08!1;UBERON:0004256!8.28e-08!1;UBERON:0002529!8.28e-08!1;UBERON:0004708!8.28e-08!1;UBERON:0002101!8.28e-08!1;UBERON:0004709!8.28e-08!1;UBERON:0003661!8.28e-08!1;UBERON:0002471!8.28e-08!1;UBERON:0004357!8.28e-08!1;UBERON:0009872!8.28e-08!1;UBERON:0004347!8.28e-08!1;UBERON:0005420!8.28e-08!1;UBERON:0005732!8.28e-08!1;UBERON:0006057!8.28e-08!1;UBERON:0000978!8.28e-08!1;UBERON:0002103!8.28e-08!1;UBERON:0001665!8.28e-08!1;UBERON:0003823!8.28e-08!1;UBERON:0000154!8.28e-08!1;UBERON:0005733!8.28e-08!1;UBERON:0005730!8.28e-08!1;UBERON:0007023!8.88e-08!115;UBERON:0002146!1.91e-07!1;UBERON:0005623!1.91e-07!1;UBERON:0008835!2.56e-07!22;UBERON:0003894!2.56e-07!22;UBERON:0002336!2.63e-07!1;UBERON:0001018!2.63e-07!1;UBERON:0002473!2.63e-07!1;UBERON:0005340!2.63e-07!1;UBERON:0002316!2.63e-07!1;UBERON:0003544!2.63e-07!1;UBERON:0001020!2.63e-07!1;UBERON:0005970!2.63e-07!1;UBERON:0002437!2.63e-07!1;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1;UBERON:0009854!5.49e-07!23|ontology_enrichment_uberon_v019=UBERON:0002107;1.13e-17;19!UBERON:0006925;1.13e-17;19!UBERON:0001389;1.84e-14;1!UBERON:0000026;1.84e-14;1!UBERON:0008784;1.84e-14;1!UBERON:0006058;1.84e-14;1!UBERON:0003663;1.84e-14;1!UBERON:0004256;1.84e-14;1!UBERON:0004708;1.84e-14;1!UBERON:0002101;1.84e-14;1!UBERON:0004709;1.84e-14;1!UBERON:0002529;1.84e-14;1!UBERON:0010538;1.84e-14;1!UBERON:0003661;1.84e-14;1!UBERON:0010890;1.84e-14;1!UBERON:0002471;1.84e-14;1!UBERON:0001383;1.84e-14;1!UBERON:0010758;1.84e-14;1!UBERON:0010707;1.84e-14;1!UBERON:0000978;1.84e-14;1!UBERON:0002103;1.84e-14;1!UBERON:0001665;1.84e-14;1!UBERON:0003823;1.84e-14;1!UBERON:0000154;1.84e-14;1!UBERON:0010709;1.84e-14;1!UBERON:0002346;6.33e-14;4!UBERON:0000923;6.33e-14;4!UBERON:0010316;6.33e-14;4!UBERON:0005291;6.33e-14;4!UBERON:0002423;1.96e-13;25!UBERON:0002050;2.48e-11;5!UBERON:0005423;2.48e-11;5!UBERON:0002365;8.11e-11;31!UBERON:0002330;8.11e-11;31!UBERON:0002368;2.13e-09;33!UBERON:0000949;5.53e-09;43!UBERON:0005090;7.03e-08;2!UBERON:0001630;7.03e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.13e-17,19;UBERON:0006925,1.13e-17,19;UBERON:0008836,1.13e-17,19;UBERON:0008835,2.89e-15,22;UBERON:0003894,2.89e-15,22;UBERON:0009854,1.33e-14,23;UBERON:0005418,1.84e-14,1;UBERON:0001389,1.84e-14,1;UBERON:0000026,1.84e-14,1;UBERON:0008784,1.84e-14,1;UBERON:0006058,1.84e-14,1;UBERON:0003663,1.84e-14,1;UBERON:0004256,1.84e-14,1;UBERON:0004708,1.84e-14,1;UBERON:0002101,1.84e-14,1;UBERON:0004709,1.84e-14,1;UBERON:0002529,1.84e-14,1;UBERON:0010538,1.84e-14,1;UBERON:0003661,1.84e-14,1;UBERON:0010890,1.84e-14,1;UBERON:0002471,1.84e-14,1;UBERON:0001383,1.84e-14,1;UBERON:0004357,1.84e-14,1;UBERON:0004347,1.84e-14,1;UBERON:0005420,1.84e-14,1;UBERON:0005732,1.84e-14,1;UBERON:0010758,1.84e-14,1;UBERON:0010707,1.84e-14,1;UBERON:0000978,1.84e-14,1;UBERON:0002103,1.84e-14,1;UBERON:0001665,1.84e-14,1;UBERON:0003823,1.84e-14,1;UBERON:0000154,1.84e-14,1;UBERON:0010709,1.84e-14,1;UBERON:0005733,1.84e-14,1;UBERON:0005730,1.84e-14,1;UBERON:0007499,1.96e-13,25;UBERON:0009497,1.96e-13,25;UBERON:0000015,1.96e-13,25;UBERON:0002423,1.96e-13,25;UBERON:0006235,1.96e-13,25;UBERON:0004161,1.96e-13,25;UBERON:0009856,6.45e-13,26;UBERON:0002365,7.91e-11,31;UBERON:0002330,7.91e-11,31;UBERON:0000949,1.95e-10,45;UBERON:0002368,1.39e-09,35;UBERON:0003929,1.33e-08,54;UBERON:0005090,7.03e-08,2;UBERON:0001630,7.03e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,500.68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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55089 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=14679 | |||
|TSSclassifier=S | |||
|UniProt=Q969I6 | |||
|association_with_transcript=89bp_to_BC069819_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_SLC38A4_5end | |||
|id=chr12:47197427..47197443,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;9.93e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,9.93e-11,12 | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.83e-07;31 | |||
|ontology_enrichment_disease=DOID:114!1.64e-13!2;DOID:178!1.48e-07!1;DOID:326!1.48e-07!1;DOID:3978!1.48e-07!1;DOID:3394!1.48e-07!1;DOID:5844!1.48e-07!1;DOID:1287!3.49e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003127!2.24e-13!2;UBERON:0005057!1.59e-08!26;UBERON:0002107!1.61e-08!19;UBERON:0006925!1.61e-08!19;UBERON:0008836!1.61e-08!19;UBERON:0005418!8.28e-08!1;UBERON:0001389!8.28e-08!1;UBERON:0000026!8.28e-08!1;UBERON:0008784!8.28e-08!1;UBERON:0006058!8.28e-08!1;UBERON:0003663!8.28e-08!1;UBERON:0001383!8.28e-08!1;UBERON:0004256!8.28e-08!1;UBERON:0002529!8.28e-08!1;UBERON:0004708!8.28e-08!1;UBERON:0002101!8.28e-08!1;UBERON:0004709!8.28e-08!1;UBERON:0003661!8.28e-08!1;UBERON:0002471!8.28e-08!1;UBERON:0004357!8.28e-08!1;UBERON:0009872!8.28e-08!1;UBERON:0004347!8.28e-08!1;UBERON:0005420!8.28e-08!1;UBERON:0005732!8.28e-08!1;UBERON:0006057!8.28e-08!1;UBERON:0000978!8.28e-08!1;UBERON:0002103!8.28e-08!1;UBERON:0001665!8.28e-08!1;UBERON:0003823!8.28e-08!1;UBERON:0000154!8.28e-08!1;UBERON:0005733!8.28e-08!1;UBERON:0005730!8.28e-08!1;UBERON:0007023!8.88e-08!115;UBERON:0002146!1.91e-07!1;UBERON:0005623!1.91e-07!1;UBERON:0008835!2.56e-07!22;UBERON:0003894!2.56e-07!22;UBERON:0002336!2.63e-07!1;UBERON:0001018!2.63e-07!1;UBERON:0002473!2.63e-07!1;UBERON:0005340!2.63e-07!1;UBERON:0002316!2.63e-07!1;UBERON:0003544!2.63e-07!1;UBERON:0001020!2.63e-07!1;UBERON:0005970!2.63e-07!1;UBERON:0002437!2.63e-07!1;UBERON:0002363!2.98e-07!1;UBERON:0007647!2.98e-07!1;UBERON:0010115!2.98e-07!1;UBERON:0009854!5.49e-07!23 | |||
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|short_description=p1@SLC38A4 | |||
}} |
Revision as of 22:44, 10 September 2013
Short description: | p1@SLC38A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLC38A4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 89bp_to_BC069819_5end |
EntrezGene: | SLC38A4 |
HGNC: | 14679 |
UniProt: | Q969I6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 9.93e-11 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.