FFCP PHASE1:Hg19::chr10:88428400..88428435,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11155|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15710|TSSclassifier=S|UniProt=O75112|association_with_transcript=0bp_to_ENST00000263066,ENST00000310944,ENST00000361373,ENST00000372056,NM_001080114,NM_001080115,NM_001171611,NM_007078,uc001kds.2,uc001kdt.2,uc001kdu.2,uc001kdv.2,uc009xsy.2,uc009xsz.2_5end|coexpression_cluster_id=C20|description=CAGE_peak_4_at_LDB3_5end|id=chr10:88428400..88428435,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005062;6.73e-15;4!UBERON:0007284;6.73e-15;4!UBERON:0006965;4.61e-13;2!UBERON:0006603;1.13e-09;65!UBERON:0004872;1.52e-08;7!UBERON:0010227;4.57e-08;1!UBERON:0010226;5.58e-08;1!UBERON:0004140;6.58e-08;1!UBERON:0004874;1.04e-07;1!UBERON:0000358;1.22e-07;1!UBERON:0006298;2.71e-07;1!UBERON:0008801;2.71e-07;1!UBERON:0003104;8.32e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;3.50e-14;2!DOID:178;7.76e-08;1!DOID:326;7.76e-08;1!DOID:3978;7.76e-08;1!DOID:3394;7.76e-08;1!DOID:5844;7.76e-08;1!DOID:1287;1.64e-07;4|ontology_enrichment_disease_v019_2=DOID:114,3.50e-14,2;DOID:178,7.76e-08,1;DOID:326,7.76e-08,1;DOID:3978,7.76e-08,1;DOID:3394,7.76e-08,1;DOID:5844,7.76e-08,1;DOID:1287,1.64e-07,4|ontology_enrichment_uberon=UBERON:0007023!2.32e-46!115;UBERON:0004151!6.66e-08!3;UBERON:0003978!9.06e-08!3;UBERON:0009751!9.06e-08!3;UBERON:0000946!9.06e-08!3;UBERON:0002523!9.06e-08!3;UBERON:0005983!9.06e-08!3;UBERON:0002165!9.06e-08!3;UBERON:0002062!9.06e-08!3;UBERON:0007280!9.06e-08!3;UBERON:0003103!1.82e-07!69|ontology_enrichment_uberon_v019=UBERON:0004151;4.63e-20;3!UBERON:0003978;1.13e-19;3!UBERON:0000946;1.13e-19;3!UBERON:0007100;1.29e-19;25!UBERON:0005090;4.26e-14;2!UBERON:0001630;4.26e-14;2!UBERON:0002081;8.11e-14;2!UBERON:0002133;1.27e-13;2!UBERON:0000341;1.98e-13;2!UBERON:0001829;6.48e-13;2!UBERON:0000948;4.32e-10;22!UBERON:0001134;6.49e-10;16!UBERON:0002036;6.49e-10;16!UBERON:0001723;1.26e-09;3!UBERON:0001033;1.26e-09;3!UBERON:0002079;4.57e-08;1!UBERON:0001389;5.22e-08;1!UBERON:0000026;5.22e-08;1!UBERON:0008784;5.22e-08;1!UBERON:0006058;5.22e-08;1!UBERON:0003663;5.22e-08;1!UBERON:0004256;5.22e-08;1!UBERON:0004708;5.22e-08;1!UBERON:0002101;5.22e-08;1!UBERON:0004709;5.22e-08;1!UBERON:0002529;5.22e-08;1!UBERON:0010538;5.22e-08;1!UBERON:0003661;5.22e-08;1!UBERON:0010890;5.22e-08;1!UBERON:0002471;5.22e-08;1!UBERON:0001383;5.22e-08;1!UBERON:0010758;5.22e-08;1!UBERON:0010707;5.22e-08;1!UBERON:0000978;5.22e-08;1!UBERON:0002103;5.22e-08;1!UBERON:0001665;5.22e-08;1!UBERON:0003823;5.22e-08;1!UBERON:0000154;5.22e-08;1!UBERON:0010709;5.22e-08;1!UBERON:0002084;5.58e-08;1!UBERON:0002082;5.58e-08;1!UBERON:0002135;7.26e-08;1!UBERON:0002146;8.84e-08;1!UBERON:0002426;8.84e-08;1!UBERON:0003831;8.84e-08;1!UBERON:0003898;8.84e-08;1!UBERON:0004830;8.84e-08;1!UBERON:0005623;8.84e-08;1!UBERON:0003830;8.84e-08;1!UBERON:0005175;8.84e-08;1!UBERON:0001774;8.84e-08;1!UBERON:0001103;8.84e-08;1!UBERON:0000989;1.04e-07;1!UBERON:0008811;1.04e-07;1!UBERON:0001301;1.35e-07;1!UBERON:0007029;1.91e-07;1!UBERON:0002134;1.91e-07;1!UBERON:0005208;1.91e-07;1!UBERON:0004145;1.91e-07;1!UBERON:0005946;1.91e-07;1!UBERON:0005965;1.91e-07;1!UBERON:0002078;1.91e-07;1!UBERON:0002372;2.71e-07;1!UBERON:0001831;2.71e-07;1!UBERON:0001736;2.71e-07;1!UBERON:0001961;2.71e-07;1!UBERON:0001744;2.71e-07;1!UBERON:0001042;2.71e-07;1!UBERON:0001567;2.71e-07;1!UBERON:0001735;2.71e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.18e-20,114;UBERON:0004151,5.27e-20,3;UBERON:0003978,1.29e-19,3;UBERON:0009751,1.29e-19,3;UBERON:0000946,1.29e-19,3;UBERON:0002523,1.29e-19,3;UBERON:0005983,1.29e-19,3;UBERON:0002165,1.29e-19,3;UBERON:0002062,1.29e-19,3;UBERON:0007280,1.29e-19,3;UBERON:0007100,4.88e-18,27;UBERON:0005090,3.99e-14,2;UBERON:0001630,3.99e-14,2;UBERON:0002081,9.23e-14,2;UBERON:0010227,9.23e-14,2;UBERON:0002133,1.44e-13,2;UBERON:0000341,1.86e-13,2;UBERON:0003103,1.96e-13,68;UBERON:0001829,5.73e-13,2;UBERON:0001723,1.34e-09,3;UBERON:0001033,1.34e-09,3;UBERON:0010056,1.34e-09,3;UBERON:0000948,3.42e-09,24;UBERON:0005498,3.42e-09,24;UBERON:0004140,3.42e-09,24;UBERON:0009881,3.42e-09,24;UBERON:0004141,3.42e-09,24;UBERON:0003084,3.42e-09,24;UBERON:0007005,3.42e-09,24;UBERON:0004139,3.42e-09,24;UBERON:0004291,3.42e-09,24;UBERON:0004797,1.06e-08,7;UBERON:0002079,4.57e-08,1;UBERON:0005418,5.22e-08,1;UBERON:0001389,5.22e-08,1;UBERON:0000026,5.22e-08,1;UBERON:0008784,5.22e-08,1;UBERON:0006058,5.22e-08,1;UBERON:0003663,5.22e-08,1;UBERON:0004256,5.22e-08,1;UBERON:0004708,5.22e-08,1;UBERON:0002101,5.22e-08,1;UBERON:0004709,5.22e-08,1;UBERON:0002529,5.22e-08,1;UBERON:0010538,5.22e-08,1;UBERON:0003661,5.22e-08,1;UBERON:0010890,5.22e-08,1;UBERON:0002471,5.22e-08,1;UBERON:0001383,5.22e-08,1;UBERON:0004357,5.22e-08,1;UBERON:0004347,5.22e-08,1;UBERON:0005420,5.22e-08,1;UBERON:0005732,5.22e-08,1;UBERON:0010758,5.22e-08,1;UBERON:0010707,5.22e-08,1;UBERON:0000978,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11155 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15710 | |||
|TSSclassifier=S | |||
|UniProt=O75112 | |||
|association_with_transcript=0bp_to_ENST00000263066,ENST00000310944,ENST00000361373,ENST00000372056,NM_001080114,NM_001080115,NM_001171611,NM_007078,uc001kds.2,uc001kdt.2,uc001kdu.2,uc001kdv.2,uc009xsy.2,uc009xsz.2_5end | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_4_at_LDB3_5end | |||
|id=chr10:88428400..88428435,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;6.73e-15;4!UBERON:0007284;6.73e-15;4!UBERON:0006965;4.61e-13;2!UBERON:0006603;1.13e-09;65!UBERON:0004872;1.52e-08;7!UBERON:0010227;4.57e-08;1!UBERON:0010226;5.58e-08;1!UBERON:0004140;6.58e-08;1!UBERON:0004874;1.04e-07;1!UBERON:0000358;1.22e-07;1!UBERON:0006298;2.71e-07;1!UBERON:0008801;2.71e-07;1!UBERON:0003104;8.32e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;3.50e-14;2!DOID:178;7.76e-08;1!DOID:326;7.76e-08;1!DOID:3978;7.76e-08;1!DOID:3394;7.76e-08;1!DOID:5844;7.76e-08;1!DOID:1287;1.64e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.50e-14,2;DOID:178,7.76e-08,1;DOID:326,7.76e-08,1;DOID:3978,7.76e-08,1;DOID:3394,7.76e-08,1;DOID:5844,7.76e-08,1;DOID:1287,1.64e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.32e-46!115;UBERON:0004151!6.66e-08!3;UBERON:0003978!9.06e-08!3;UBERON:0009751!9.06e-08!3;UBERON:0000946!9.06e-08!3;UBERON:0002523!9.06e-08!3;UBERON:0005983!9.06e-08!3;UBERON:0002165!9.06e-08!3;UBERON:0002062!9.06e-08!3;UBERON:0007280!9.06e-08!3;UBERON:0003103!1.82e-07!69 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0.0915694648183434,0.082509499920588,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0.145016693914229,0.511359764496605,2.31483292681517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07667176470977,0,0,0,0,0,0,0,0,0,0,0,2.59022384726391,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.520855522170466,0,0,0,0.508507300585533,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0.067401132980677,22.4721741243661,0.234264445725339,0,0,0,0,0,0,0.947798694427319,0,0,0,0,0,0,0,0,0,0,0,4.01871336956669,0,0.0967563312890851,0.146178634172371,0.246346371159628,0.872901148395775,0,0.225980740780532,0,0,0,0.977756913674015,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.5768513119584,22.457721553145,2.15361907373044,23.162764057883,56.2286123058908,39.0550050523277,38.8992305698145,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,64.322579373603,42.3738861033876,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,3.52407511158336,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,1.41696576325585,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0.206686796501184,0.126831620387814,0,1.09651553371436,20.3446583139611,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.135939465953663,0.131545547125698,0,0,0.156986185701028,0,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,55.0314511609711,65.2935451605731,20.8766597640876,2.91426595835484,0,0,0,0,0,0,0.308696632431779,0.437119121007915,0.470317296361523,0.735444965261716,0,0.588925401344836,0,0.8453114551668,0,0,0,0,0,0,0,0,1.83491713361816,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,19.1910583710883,2.61870874610114,0,0,0,0.0636471582781649,1.0105859447911,22.424825033387,38.3301297215515,1.01028079521881,0.215166616178029,4.32458463509817,0,0,0,0,9.38563769613817,0.488965776731466,0,0,1.61019034872821,0 | |||
|short_description=p4@LDB3 | |||
}} |
Revision as of 14:46, 10 September 2013
Short description: | p4@LDB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LDB3_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000263066, ENST00000310944, ENST00000361373, ENST00000372056, NM_001080114, NM_001080115, NM_001171611, NM_007078, uc001kds.2, uc001kdt.2, uc001kdu.2, uc001kdv.2, uc009xsy.2, uc009xsz.2_5end |
EntrezGene: | LDB3 |
HGNC: | 15710 |
UniProt: | O75112 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.