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MCL coexpression mm9:648: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0000160!3.68e-30!31;UBERON:0005409!1.10e-25!47;UBERON:0000344!1.03e-16!15;UBERON:0001242!1.25e-13!13;UBERON:0000060!1.25e-13!13;UBERON:0001262!1.25e-13!13;UBERON:0004786!1.25e-13!13;UBERON:0004923!2.85e-12!24;UBERON:0003350!4.70e-08!9;UBERON:0004808!4.70e-08!9;UBERON:0001277!4.70e-08!9;UBERON:0002108!1.39e-07!4;UBERON:0004119!2.67e-07!118;UBERON:0000925!2.67e-07!118;UBERON:0006595!2.67e-07!118;UBERON:0001007!6.22e-07!116;UBERON:0001555!6.22e-07!116;UBERON:0007026!6.22e-07!116
|ontology_enrichment_uberon=UBERON:0000160!3.68e-30!31;UBERON:0005409!1.10e-25!47;UBERON:0000344!1.03e-16!15;UBERON:0001242!1.25e-13!13;UBERON:0000060!1.25e-13!13;UBERON:0001262!1.25e-13!13;UBERON:0004786!1.25e-13!13;UBERON:0004923!2.85e-12!24;UBERON:0003350!4.70e-08!9;UBERON:0004808!4.70e-08!9;UBERON:0001277!4.70e-08!9;UBERON:0002108!1.39e-07!4;UBERON:0004119!2.67e-07!118;UBERON:0000925!2.67e-07!118;UBERON:0006595!2.67e-07!118;UBERON:0001007!6.22e-07!116;UBERON:0001555!6.22e-07!116;UBERON:0007026!6.22e-07!116
|tfbs_overrepresentation_for_novel_motifs=0.29262,0.750994,0.269904,0.329881,0.52369,0.342839,0.425757,0.106126,0.362206,0.0181537,0.385334,0.414631,0.106288,0.437133,0.189961,0,0.619876,0.508485,1.60971,0.171249,0.670854,0.281622,0.436294,0.175485,0.276437,0.4628,0.0908349,0.361771,0.213277,0.231659,0.349031,0.717576,0.504188,0.0786762,0.19035,0.732568,0.161521,0.411296,0.873942,0.123934,0.173534,0.353696,0.478787,0.191571,1.11259,0.319944,0.543674,0.376103,0.401883,0.61724,0.603113,0.488021,0.220536,0.855661,0.87275,0.443782,0.634658,0.40287,1.50454,0.441884,0.698157,0.496904,0.769309,0.592318,0.45416,0.631188,1.00675,1.3527,0.693631,1.20659,0.253722,0.355763,0.0307733,0.905636,0.0810502,0.54852,0.0786324,0.532872,0.681539,1.95318,0.357936,0.636582,0.495545,0.333618,0.792744,0.0439644,0.0106044,0.0651072,0.548334,1.51408,1.07554,0.797601,0.730003,0.181374,0.141946,0.805383,0.694736,0.732731,0.543917,0.197581,0.943642,0.717305,0.838603,0.603683,0.602672,0.353298,0.660145,0.372438,0.246223,0.240055,0.286453,0.840348,0.681364,0.390066,1.0825,0.986944,0.0643992,0.333247,0.621127,1.48948,0.910937,0.572279,0.464505,0.532013,1.13603,0.685116,0.433317,0.723425,1.00525,0.183744,0.821997,0.323373,0.976125,0.456508,1.10385,0.115066,0.811774,0.35497,1.05527,1.88134,1.48237,1.01139,0.475785,0.727736,0.596462,0.354106,1.34861,1.84176,0.302077,0.178088,0.507931,0.0240729,0.857198,0.133365,1.15434,0.93735,0.488969,0.199652,0.290467,0.299755,1.06466,0.791909,0.685546,0.284483,0.593295,0.448733,0.160658,1.06237,0.451293
|tfbs_overrepresentation_for_novel_motifs=0.29262,0.750994,0.269904,0.329881,0.52369,0.342839,0.425757,0.106126,0.362206,0.0181537,0.385334,0.414631,0.106288,0.437133,0.189961,0,0.619876,0.508485,1.60971,0.171249,0.670854,0.281622,0.436294,0.175485,0.276437,0.4628,0.0908349,0.361771,0.213277,0.231659,0.349031,0.717576,0.504188,0.0786762,0.19035,0.732568,0.161521,0.411296,0.873942,0.123934,0.173534,0.353696,0.478787,0.191571,1.11259,0.319944,0.543674,0.376103,0.401883,0.61724,0.603113,0.488021,0.220536,0.855661,0.87275,0.443782,0.634658,0.40287,1.50454,0.441884,0.698157,0.496904,0.769309,0.592318,0.45416,0.631188,1.00675,1.3527,0.693631,1.20659,0.253722,0.355763,0.0307733,0.905636,0.0810502,0.54852,0.0786324,0.532872,0.681539,1.95318,0.357936,0.636582,0.495545,0.333618,0.792744,0.0439644,0.0106044,0.0651072,0.548334,1.51408,1.07554,0.797601,0.730003,0.181374,0.141946,0.805383,0.694736,0.732731,0.543917,0.197581,0.943642,0.717305,0.838603,0.603683,0.602672,0.353298,0.660145,0.372438,0.246223,0.240055,0.286453,0.840348,0.681364,0.390066,1.0825,0.986944,0.0643992,0.333247,0.621127,1.48948,0.910937,0.572279,0.464505,0.532013,1.13603,0.685116,0.433317,0.723425,1.00525,0.183744,0.821997,0.323373,0.976125,0.456508,1.10385,0.115066,0.811774,0.35497,1.05527,1.88134,1.48237,1.01139,0.475785,0.727736,0.596462,0.354106,1.34861,1.84176,0.302077,0.178088,0.507931,0.0240729,0.857198,0.133365,1.15434,0.93735,0.488969,0.199652,0.290467,0.299755,1.06466,0.791909,0.685546,0.284483,0.593295,0.448733,0.160658,1.06237,0.451293
|tfbs_overrepresentation_jaspar=MA0003.1;0.0132247,MA0004.1;0.330313,MA0006.1;0.186435,MA0007.1;0.316976,MA0009.1;0.743257,MA0014.1;0.0633827,MA0017.1;1.12929,MA0019.1;0.567591,MA0024.1;0.70077,MA0025.1;0.971686,MA0027.1;2.37948,MA0028.1;0.194782,MA0029.1;0.679737,MA0030.1;0.686088,MA0031.1;1.56948,MA0038.1;0.462726,MA0040.1;0.755433,MA0041.1;4.72944,MA0042.1;3.68174,MA0043.1;0.837621,MA0046.1;0.778239,MA0048.1;0.054097,MA0050.1;0.365212,MA0051.1;0.471092,MA0052.1;0.76328,MA0055.1;0.279128,MA0056.1;0,MA0057.1;0.181039,MA0058.1;0.246908,MA0059.1;0.257372,MA0060.1;0.12537,MA0061.1;0.884293,MA0063.1;0,MA0066.1;0.452472,MA0067.1;1.08124,MA0068.1;0.0500842,MA0069.1;0.76361,MA0070.1;0.75417,MA0071.1;0.364454,MA0072.1;0.745922,MA0073.1;0.000134849,MA0074.1;1.07546,MA0076.1;0.223625,MA0077.1;0.724865,MA0078.1;0.502121,MA0081.1;0.277253,MA0083.1;0.836845,MA0084.1;1.4063,MA0087.1;0.794721,MA0088.1;0.28966,MA0089.1;0,MA0090.1;0.299987,MA0091.1;0.906056,MA0092.1;0.300264,MA0093.1;0.20148,MA0095.1;0,MA0098.1;0,MA0100.1;0.408523,MA0101.1;0.73212,MA0103.1;0.619698,MA0105.1;3.2041,MA0106.1;1.26962,MA0107.1;0.607721,MA0108.2;0.589413,MA0109.1;0,MA0111.1;0.312463,MA0113.1;0.482899,MA0114.1;0.446898,MA0115.1;0.84036,MA0116.1;0.186271,MA0117.1;0.808813,MA0119.1;0.733279,MA0122.1;0.828211,MA0124.1;1.02871,MA0125.1;0.955734,MA0130.1;0,MA0131.1;0.563262,MA0132.1;0,MA0133.1;0,MA0135.1;0.873285,MA0136.1;0.437601,MA0139.1;2.28235,MA0140.1;1.05203,MA0141.1;0.233109,MA0142.1;0.63775,MA0143.1;0.49828,MA0144.1;0.147954,MA0145.1;0.3137,MA0146.1;0.331601,MA0147.1;0.157258,MA0148.1;0.912216,MA0149.1;1.36348,MA0062.2;0.0791588,MA0035.2;0.412747,MA0039.2;0.0387728,MA0138.2;0.555696,MA0002.2;0.105469,MA0137.2;0.230686,MA0104.2;0.11535,MA0047.2;1.16804,MA0112.2;0.0329566,MA0065.2;0.133827,MA0150.1;2.33344,MA0151.1;0,MA0152.1;0.46211,MA0153.1;0.889592,MA0154.1;0.759699,MA0155.1;0.154271,MA0156.1;0.222905,MA0157.1;0.606944,MA0158.1;0,MA0159.1;0.165031,MA0160.1;0.347545,MA0161.1;0,MA0162.1;0.00661648,MA0163.1;0.00559554,MA0164.1;0.437937,MA0080.2;0.212408,MA0018.2;0.446948,MA0099.2;1.35508,MA0079.2;0.000158926,MA0102.2;1.45844,MA0258.1;0.135621,MA0259.1;0.14914,MA0442.1;0
}}
}}

Revision as of 12:05, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:115744204..115744215,+p@chr11:115744204..115744215
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Mm9::chr14:55029001..55029016,-p@chr14:55029001..55029016
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Mm9::chr18:66669526..66669531,+p@chr18:66669526..66669531
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Mm9::chr1:193615247..193615254,-p@chr1:193615247..193615254
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Mm9::chr6:129043369..129043373,-p@chr6:129043369..129043373
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Mm9::chr7:148455845..148455856,-p@chr7:148455845..148455856
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Mm9::chr7:148457625..148457637,-p@chr7:148457625..148457637
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Mm9::chr7:148457655..148457667,-p@chr7:148457655..148457667
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Mm9::chr7:148457709..148457720,-p@chr7:148457709..148457720
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Mm9::chr7:36236413..36236416,+p@chr7:36236413..36236416
+
Mm9::chrX:160578478..160578494,+p7@Ace2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine3.68e-3031
gastrointestinal system1.10e-2547
mucosa1.03e-1615
intestinal mucosa1.25e-1313
anatomical wall1.25e-1313
wall of intestine1.25e-1313
gastrointestinal system mucosa1.25e-1313
organ component layer2.85e-1224
epithelium of mucosa4.70e-089
gastrointestinal system epithelium4.70e-089
intestinal epithelium4.70e-089
small intestine1.39e-074
endoderm-derived structure2.67e-07118
endoderm2.67e-07118
presumptive endoderm2.67e-07118
digestive system6.22e-07116
digestive tract6.22e-07116
primitive gut6.22e-07116


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0132247
MA0004.10.330313
MA0006.10.186435
MA0007.10.316976
MA0009.10.743257
MA0014.10.0633827
MA0017.11.12929
MA0019.10.567591
MA0024.10.70077
MA0025.10.971686
MA0027.12.37948
MA0028.10.194782
MA0029.10.679737
MA0030.10.686088
MA0031.11.56948
MA0038.10.462726
MA0040.10.755433
MA0041.14.72944
MA0042.13.68174
MA0043.10.837621
MA0046.10.778239
MA0048.10.054097
MA0050.10.365212
MA0051.10.471092
MA0052.10.76328
MA0055.10.279128
MA0056.10
MA0057.10.181039
MA0058.10.246908
MA0059.10.257372
MA0060.10.12537
MA0061.10.884293
MA0063.10
MA0066.10.452472
MA0067.11.08124
MA0068.10.0500842
MA0069.10.76361
MA0070.10.75417
MA0071.10.364454
MA0072.10.745922
MA0073.10.000134849
MA0074.11.07546
MA0076.10.223625
MA0077.10.724865
MA0078.10.502121
MA0081.10.277253
MA0083.10.836845
MA0084.11.4063
MA0087.10.794721
MA0088.10.28966
MA0089.10
MA0090.10.299987
MA0091.10.906056
MA0092.10.300264
MA0093.10.20148
MA0095.10
MA0098.10
MA0100.10.408523
MA0101.10.73212
MA0103.10.619698
MA0105.13.2041
MA0106.11.26962
MA0107.10.607721
MA0108.20.589413
MA0109.10
MA0111.10.312463
MA0113.10.482899
MA0114.10.446898
MA0115.10.84036
MA0116.10.186271
MA0117.10.808813
MA0119.10.733279
MA0122.10.828211
MA0124.11.02871
MA0125.10.955734
MA0130.10
MA0131.10.563262
MA0132.10
MA0133.10
MA0135.10.873285
MA0136.10.437601
MA0139.12.28235
MA0140.11.05203
MA0141.10.233109
MA0142.10.63775
MA0143.10.49828
MA0144.10.147954
MA0145.10.3137
MA0146.10.331601
MA0147.10.157258
MA0148.10.912216
MA0149.11.36348
MA0062.20.0791588
MA0035.20.412747
MA0039.20.0387728
MA0138.20.555696
MA0002.20.105469
MA0137.20.230686
MA0104.20.11535
MA0047.21.16804
MA0112.20.0329566
MA0065.20.133827
MA0150.12.33344
MA0151.10
MA0152.10.46211
MA0153.10.889592
MA0154.10.759699
MA0155.10.154271
MA0156.10.222905
MA0157.10.606944
MA0158.10
MA0159.10.165031
MA0160.10.347545
MA0161.10
MA0162.10.00661648
MA0163.10.00559554
MA0164.10.437937
MA0080.20.212408
MA0018.20.446948
MA0099.21.35508
MA0079.20.000158926
MA0102.21.45844
MA0258.10.135621
MA0259.10.14914
MA0442.10
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