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MCL coexpression mm9:468: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0005409!5.32e-32!47;UBERON:0000160!5.92e-30!31;UBERON:0000344!1.88e-17!15;UBERON:0001242!4.45e-15!13;UBERON:0000060!4.45e-15!13;UBERON:0001262!4.45e-15!13;UBERON:0004786!4.45e-15!13;UBERON:0003350!2.67e-10!9;UBERON:0004808!2.67e-10!9;UBERON:0001277!2.67e-10!9;UBERON:0001007!5.05e-10!116;UBERON:0001555!5.05e-10!116;UBERON:0007026!5.05e-10!116;UBERON:0004119!1.24e-09!118;UBERON:0000925!1.24e-09!118;UBERON:0006595!1.24e-09!118;UBERON:0004923!4.54e-09!24;UBERON:0004921!8.57e-09!114;UBERON:0000485!5.46e-08!11
|ontology_enrichment_uberon=UBERON:0005409!5.32e-32!47;UBERON:0000160!5.92e-30!31;UBERON:0000344!1.88e-17!15;UBERON:0001242!4.45e-15!13;UBERON:0000060!4.45e-15!13;UBERON:0001262!4.45e-15!13;UBERON:0004786!4.45e-15!13;UBERON:0003350!2.67e-10!9;UBERON:0004808!2.67e-10!9;UBERON:0001277!2.67e-10!9;UBERON:0001007!5.05e-10!116;UBERON:0001555!5.05e-10!116;UBERON:0007026!5.05e-10!116;UBERON:0004119!1.24e-09!118;UBERON:0000925!1.24e-09!118;UBERON:0006595!1.24e-09!118;UBERON:0004923!4.54e-09!24;UBERON:0004921!8.57e-09!114;UBERON:0000485!5.46e-08!11
|tfbs_overrepresentation_for_novel_motifs=0.19013,0.100481,0.984016,0.630846,0.667417,0.232532,0.823081,0.186307,0.439801,0.304705,0.26934,1.45608,0.0498401,0.315149,0.351364,0,0.482714,0.312712,1.48468,0.183206,0.146132,0.242916,0.3144,0.322638,0.523846,0.338177,0.644752,0.694761,0.126301,0.262034,0.237846,0.574932,0.309242,0.133454,0.352136,0.293613,0.0875334,0.292182,0.55598,0.0613737,0.656409,0.678575,3.33834,2.35171,0.510293,0.213039,0.41191,0.26128,1.32347,1.303,0.467043,0.360991,0.100464,0.7073,0.723811,0.321095,0.417292,0.284741,0.957715,0.319396,0.556492,0.369066,0.813959,0.456979,0.330403,0.493315,0.854035,1.19441,0.552202,1.05011,0.158281,0.19416,0.261967,0.755651,0.0343898,0.297446,1.29947,0.401969,0.540754,0.455238,0.0528615,0.498379,0.36783,0.0470048,0.646739,0.00962,0.103037,4.32907,0.416206,1.35441,0.92132,0.6514,0.586758,0.102076,0.073664,0.49924,1.11159,0.589355,0.412133,0.0860851,0.0875773,0.574674,0.690844,0.467576,0.466632,0.241519,0.52055,0.25809,0.463457,0.147333,0.543885,0.692526,2.06453,0.273484,0.928143,0.65152,0.402998,0.224335,0.483885,1.50799,0.760792,0.438354,0.339713,0.40118,0.980682,0.544138,0.311744,0.580495,0.852575,2.28625,0.67485,0.215942,0.824167,0.332514,0.949083,0.238175,0.571001,0.681128,0.901468,1.71991,1.32292,0.85857,0.349901,0.584599,0.46084,0.242215,0.414644,1.68046,0.198013,0.327798,0.498918,0.00625462,0.708784,1.32817,0.331737,0.786435,0.361851,0.115836,0.188342,0.196072,0.910663,0.645939,0.544546,1.03245,0.457889,0.325532,0.0869123,0.293837,0.765263
|tfbs_overrepresentation_for_novel_motifs=0.19013,0.100481,0.984016,0.630846,0.667417,0.232532,0.823081,0.186307,0.439801,0.304705,0.26934,1.45608,0.0498401,0.315149,0.351364,0,0.482714,0.312712,1.48468,0.183206,0.146132,0.242916,0.3144,0.322638,0.523846,0.338177,0.644752,0.694761,0.126301,0.262034,0.237846,0.574932,0.309242,0.133454,0.352136,0.293613,0.0875334,0.292182,0.55598,0.0613737,0.656409,0.678575,3.33834,2.35171,0.510293,0.213039,0.41191,0.26128,1.32347,1.303,0.467043,0.360991,0.100464,0.7073,0.723811,0.321095,0.417292,0.284741,0.957715,0.319396,0.556492,0.369066,0.813959,0.456979,0.330403,0.493315,0.854035,1.19441,0.552202,1.05011,0.158281,0.19416,0.261967,0.755651,0.0343898,0.297446,1.29947,0.401969,0.540754,0.455238,0.0528615,0.498379,0.36783,0.0470048,0.646739,0.00962,0.103037,4.32907,0.416206,1.35441,0.92132,0.6514,0.586758,0.102076,0.073664,0.49924,1.11159,0.589355,0.412133,0.0860851,0.0875773,0.574674,0.690844,0.467576,0.466632,0.241519,0.52055,0.25809,0.463457,0.147333,0.543885,0.692526,2.06453,0.273484,0.928143,0.65152,0.402998,0.224335,0.483885,1.50799,0.760792,0.438354,0.339713,0.40118,0.980682,0.544138,0.311744,0.580495,0.852575,2.28625,0.67485,0.215942,0.824167,0.332514,0.949083,0.238175,0.571001,0.681128,0.901468,1.71991,1.32292,0.85857,0.349901,0.584599,0.46084,0.242215,0.414644,1.68046,0.198013,0.327798,0.498918,0.00625462,0.708784,1.32817,0.331737,0.786435,0.361851,0.115836,0.188342,0.196072,0.910663,0.645939,0.544546,1.03245,0.457889,0.325532,0.0869123,0.293837,0.765263
|tfbs_overrepresentation_jaspar=MA0003.1;0.00105703,MA0004.1;0.221835,MA0006.1;0.344361,MA0007.1;0.210531,MA0009.1;0.599391,MA0014.1;0.0349468,MA0017.1;0.387005,MA0019.1;0.434009,MA0024.1;0.558971,MA0025.1;0.819843,MA0027.1;2.21717,MA0028.1;0.112137,MA0029.1;0.53905,MA0030.1;3.39304,MA0031.1;1.27635,MA0038.1;0.33811,MA0040.1;0.611015,MA0041.1;0.166538,MA0042.1;0.15744,MA0043.1;0.689898,MA0046.1;1.53,MA0048.1;0.087253,MA0050.1;0.251816,MA0051.1;0.345658,MA0052.1;0.618515,MA0055.1;0.71373,MA0056.1;0,MA0057.1;0.0760759,MA0058.1;0.152805,MA0059.1;0.161227,MA0060.1;0.0623353,MA0061.1;0.0774738,MA0063.1;0,MA0066.1;0.328887,MA0067.1;0.92691,MA0068.1;0.394673,MA0069.1;0.618831,MA0070.1;0.609808,MA0071.1;0.251158,MA0072.1;0.601934,MA0073.1;2.92974e-06,MA0074.1;0.8099,MA0076.1;0.418364,MA0077.1;0.581866,MA0078.1;0.37382,MA0081.1;0.177433,MA0083.1;0.68915,MA0084.1;1.24749,MA0087.1;0.648637,MA0088.1;0.00828903,MA0089.1;0,MA0090.1;0.570974,MA0091.1;0.655274,MA0092.1;0.196497,MA0093.1;0.11723,MA0095.1;0,MA0098.1;0,MA0100.1;0.289731,MA0101.1;0.167439,MA0103.1;0.805091,MA0105.1;0.128193,MA0106.1;0.380511,MA0107.1;0.787845,MA0108.2;0.454274,MA0109.1;0,MA0111.1;1.12477,MA0113.1;2.5255,MA0114.1;0.263654,MA0115.1;0.692537,MA0116.1;0.344035,MA0117.1;1.59128,MA0119.1;1.54341,MA0122.1;0.680832,MA0124.1;0.875485,MA0125.1;0.804312,MA0130.1;0,MA0131.1;0.43,MA0132.1;0,MA0133.1;0,MA0135.1;0.724328,MA0136.1;0.315568,MA0139.1;1.558,MA0140.1;0.289637,MA0141.1;0.437281,MA0142.1;0.499475,MA0143.1;0.37032,MA0144.1;0.268209,MA0145.1;0.4773,MA0146.1;0.196916,MA0147.1;0.0844713,MA0148.1;1.91164,MA0149.1;0.171305,MA0062.2;0.0332891,MA0035.2;0.293466,MA0039.2;0.119432,MA0138.2;0.423003,MA0002.2;0.049318,MA0137.2;0.852405,MA0104.2;0.0556953,MA0047.2;1.60731,MA0112.2;0.0491092,MA0065.2;0.7347,MA0150.1;0.210447,MA0151.1;0,MA0152.1;0.337555,MA0153.1;1.75314,MA0154.1;0.0190254,MA0155.1;1.15736,MA0156.1;0.133796,MA0157.1;0.47062,MA0158.1;0,MA0159.1;1.04823,MA0160.1;0.23657,MA0161.1;0,MA0162.1;0.000977979,MA0163.1;0.0215627,MA0164.1;0.315868,MA0080.2;0.396013,MA0018.2;0.323932,MA0099.2;0.417463,MA0079.2;0.00412706,MA0102.2;1.29919,MA0258.1;1.34452,MA0259.1;0.570812,MA0442.1;0
}}
}}

Revision as of 11:48, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr13:47095474..47095500,+p@chr13:47095474..47095500
+
Mm9::chr17:27865882..27865901,-p1@Spdef
Mm9::chr1:57902437..57902461,+p4@Spats2l
Mm9::chr1:95270373..95270384,+p4@Ano7
Mm9::chr1:95270387..95270416,+p1@Ano7
Mm9::chr1:95270421..95270437,+p3@Ano7
Mm9::chr1:95270441..95270448,+p5@Ano7
Mm9::chr1:95270451..95270476,+p2@Ano7
Mm9::chr4:133616654..133616663,+p@chr4:133616654..133616663
+
Mm9::chr4:57928612..57928646,-p@chr4:57928612..57928646
-
Mm9::chr6:146981131..146981147,+p2@Rep15
Mm9::chr7:26601699..26601742,-p3@Cyp2s1
Mm9::chr8:12931672..12931711,+p@chr8:12931672..12931711
+
Mm9::chr9:15043510..15043599,+p1@2200002K05Rik
Mm9::chr9:40130999..40131043,+p1@ENSMUST00000140807
Mm9::chr9:72913668..72913692,+p@chr9:72913668..72913692
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00105703
MA0004.10.221835
MA0006.10.344361
MA0007.10.210531
MA0009.10.599391
MA0014.10.0349468
MA0017.10.387005
MA0019.10.434009
MA0024.10.558971
MA0025.10.819843
MA0027.12.21717
MA0028.10.112137
MA0029.10.53905
MA0030.13.39304
MA0031.11.27635
MA0038.10.33811
MA0040.10.611015
MA0041.10.166538
MA0042.10.15744
MA0043.10.689898
MA0046.11.53
MA0048.10.087253
MA0050.10.251816
MA0051.10.345658
MA0052.10.618515
MA0055.10.71373
MA0056.10
MA0057.10.0760759
MA0058.10.152805
MA0059.10.161227
MA0060.10.0623353
MA0061.10.0774738
MA0063.10
MA0066.10.328887
MA0067.10.92691
MA0068.10.394673
MA0069.10.618831
MA0070.10.609808
MA0071.10.251158
MA0072.10.601934
MA0073.12.92974e-06
MA0074.10.8099
MA0076.10.418364
MA0077.10.581866
MA0078.10.37382
MA0081.10.177433
MA0083.10.68915
MA0084.11.24749
MA0087.10.648637
MA0088.10.00828903
MA0089.10
MA0090.10.570974
MA0091.10.655274
MA0092.10.196497
MA0093.10.11723
MA0095.10
MA0098.10
MA0100.10.289731
MA0101.10.167439
MA0103.10.805091
MA0105.10.128193
MA0106.10.380511
MA0107.10.787845
MA0108.20.454274
MA0109.10
MA0111.11.12477
MA0113.12.5255
MA0114.10.263654
MA0115.10.692537
MA0116.10.344035
MA0117.11.59128
MA0119.11.54341
MA0122.10.680832
MA0124.10.875485
MA0125.10.804312
MA0130.10
MA0131.10.43
MA0132.10
MA0133.10
MA0135.10.724328
MA0136.10.315568
MA0139.11.558
MA0140.10.289637
MA0141.10.437281
MA0142.10.499475
MA0143.10.37032
MA0144.10.268209
MA0145.10.4773
MA0146.10.196916
MA0147.10.0844713
MA0148.11.91164
MA0149.10.171305
MA0062.20.0332891
MA0035.20.293466
MA0039.20.119432
MA0138.20.423003
MA0002.20.049318
MA0137.20.852405
MA0104.20.0556953
MA0047.21.60731
MA0112.20.0491092
MA0065.20.7347
MA0150.10.210447
MA0151.10
MA0152.10.337555
MA0153.11.75314
MA0154.10.0190254
MA0155.11.15736
MA0156.10.133796
MA0157.10.47062
MA0158.10
MA0159.11.04823
MA0160.10.23657
MA0161.10
MA0162.10.000977979
MA0163.10.0215627
MA0164.10.315868
MA0080.20.396013
MA0018.20.323932
MA0099.20.417463
MA0079.20.00412706
MA0102.21.29919
MA0258.11.34452
MA0259.10.570812
MA0442.10
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