FFCP PHASE1:Hg19::chr11:2016663..2016681,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000188!1.74e-13!9;CL:0000349!3.01e-10!3;CL:0002577!3.01e-10!3;CL:0002541!5.79e-10!3;CL:0002575!3.86e-07!2;CL:0002536!6.01e-07!2 | |ontology_enrichment_celltype=CL:0000188!1.74e-13!9;CL:0000349!3.01e-10!3;CL:0002577!3.01e-10!3;CL:0002541!5.79e-10!3;CL:0002575!3.86e-07!2;CL:0002536!6.01e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;4.55e-47;19!CL:0002577;4.52e-28;3!CL:0002537;1.49e-17;5!CL:0002541;1.33e-13;3!CL:0002616;1.65e-10;1!CL:0002581;3.00e-10;1 | |ontology_enrichment_celltype_v019=CL:0000349;4.55e-47;19!CL:0002577;4.52e-28;3!CL:0002537;1.49e-17;5!CL:0002541;1.33e-13;3!CL:0002616;1.65e-10;1!CL:0002581;3.00e-10;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.02e-47,19;CL:0002577,3.27e-28,3;CL:0002537,1.49e-17,5;CL:0002541,1.33e-13,3;CL:0002616,1.57e-10,1;CL:0002581,2.74e-10,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.71e-29!14;UBERON:0000158!3.71e-29!14;UBERON:0001737!6.38e-25!9;UBERON:0003124!1.57e-20!7;UBERON:0000478!1.12e-18!24;UBERON:0001557!2.44e-16!19;UBERON:0001987!2.74e-12!4;UBERON:0004340!2.74e-12!4;UBERON:0000305!4.42e-11!7;UBERON:0000476!5.79e-10!3;UBERON:0000920!5.79e-10!3;UBERON:0004871!1.23e-09!8;UBERON:0004923!3.06e-09!57;UBERON:0005406!2.86e-07!2;UBERON:0001630!6.37e-07!2;UBERON:0005090!6.37e-07!2 | |ontology_enrichment_uberon=UBERON:0005631!3.71e-29!14;UBERON:0000158!3.71e-29!14;UBERON:0001737!6.38e-25!9;UBERON:0003124!1.57e-20!7;UBERON:0000478!1.12e-18!24;UBERON:0001557!2.44e-16!19;UBERON:0001987!2.74e-12!4;UBERON:0004340!2.74e-12!4;UBERON:0000305!4.42e-11!7;UBERON:0000476!5.79e-10!3;UBERON:0000920!5.79e-10!3;UBERON:0004871!1.23e-09!8;UBERON:0004923!3.06e-09!57;UBERON:0005406!2.86e-07!2;UBERON:0001630!6.37e-07!2;UBERON:0005090!6.37e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.60e-37;24!UBERON:0005631;4.05e-33;10!UBERON:0000158;4.05e-33;10!UBERON:0000305;1.91e-21;7!UBERON:0001987;3.16e-21;4!UBERON:0005406;5.19e-19;2!UBERON:0003124;1.33e-13;3!UBERON:0000920;1.33e-13;3 | |ontology_enrichment_uberon_v019=UBERON:0000478;5.60e-37;24!UBERON:0005631;4.05e-33;10!UBERON:0000158;4.05e-33;10!UBERON:0000305;1.91e-21;7!UBERON:0001987;3.16e-21;4!UBERON:0005406;5.19e-19;2!UBERON:0003124;1.33e-13;3!UBERON:0000920;1.33e-13;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.16e-52,14;UBERON:0000158,2.16e-52,14;UBERON:0000478,4.06e-37,24;UBERON:0003124,4.40e-33,7;UBERON:0000305,1.47e-21,7;UBERON:0001987,2.49e-21,4;UBERON:0004340,2.49e-21,4;UBERON:0005406,4.53e-19,2;UBERON:0004871,6.74e-19,8;UBERON:0000920,1.33e-13,3;UBERON:0004923,1.57e-12,66 | |||
|phase1_expression=0,0,0,0,0,2.61701557230111,0,0,0,0,0,0.436882744260345,1.84636884759917,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.828147600278907,0.674338760312407,0.482022059766964,0.661763836394364,0.653638332277218,0.474541238222193,1.48314438976181,0.196221465125346,1.53898862778556,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25572963234866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.783204629850962,2.40200396667599,0,0,0,4.54691357169389,6.65741758041988,1.81434175997808,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.308097234229289,0.460511024178389,0.137836572484531,0.107420244868274,0,0.255679882248303,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28381696410176,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4597352674091,5.93929361665277,8.90766036087773,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628303510868405,0.434589487688032,9.8890359516895,0.366390373607449,10.6606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,4.99524023955326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,1.61735932610474,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0.342233301085281,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,2.61701557230111,0,0,0,0,0,0.436882744260345,1.84636884759917,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.828147600278907,0.674338760312407,0.482022059766964,0.661763836394364,0.653638332277218,0.474541238222193,1.48314438976181,0.196221465125346,1.53898862778556,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25572963234866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.783204629850962,2.40200396667599,0,0,0,4.54691357169389,6.65741758041988,1.81434175997808,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.308097234229289,0.460511024178389,0.137836572484531,0.107420244868274,0,0.255679882248303,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28381696410176,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4597352674091,5.93929361665277,8.90766036087773,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628303510868405,0.434589487688032,9.8890359516895,0.366390373607449,10.6606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,4.99524023955326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,1.61735932610474,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0.342233301085281,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@RPSA | |short_description=p5@RPSA | ||
}} | }} |
Revision as of 19:19, 19 November 2012
Short description: | p5@RPSA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_RPSA_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | 257bp_to_BC010054, BC010055_5end |
EntrezGene: | RPSA |
HGNC: | 6502 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.02e-47 | 19 |
placental epithelial cell | 3.27e-28 | 3 |
amnion mesenchymal stem cell | 1.49e-17 | 5 |
chorionic membrane mesenchymal stem cell | 1.33e-13 | 3 |
perirenal adipocyte cell | 1.57e-10 | 1 |
perirenal preadipocyte | 2.74e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.16e-52 | 14 |
membranous layer | 2.16e-52 | 14 |
extraembryonic structure | 4.06e-37 | 24 |
chorion | 4.40e-33 | 7 |
amnion | 1.47e-21 | 7 |
placenta | 2.49e-21 | 4 |
allantois | 2.49e-21 | 4 |
perirenal fat | 4.53e-19 | 2 |
somatic layer of lateral plate mesoderm | 6.74e-19 | 8 |
egg chorion | 1.33e-13 | 3 |
organ component layer | 1.57e-12 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.