FFCP PHASE1:Hg19::chr3:112357848..112357858,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!2.03e-17!180;CL:0000057!2.60e-16!75;CL:0002620!1.78e-10!23;CL:0002334!2.31e-08!12;CL:0000136!9.97e-08!15 | |ontology_enrichment_celltype=CL:0000055!2.03e-17!180;CL:0000057!2.60e-16!75;CL:0002620!1.78e-10!23;CL:0002334!2.31e-08!12;CL:0000136!9.97e-08!15 | ||
|ontology_enrichment_celltype_v019=CL:0002620;6.15e-14;23!CL:0000136;3.06e-10;13!CL:1000306;1.16e-09;4!CL:0002547;1.16e-09;4!CL:0002615;2.75e-08;3!CL:0002579;7.54e-08;3!CL:0000135;8.85e-08;3!CL:0000388;8.85e-08;3 | |ontology_enrichment_celltype_v019=CL:0002620;6.15e-14;23!CL:0000136;3.06e-10;13!CL:1000306;1.16e-09;4!CL:0002547;1.16e-09;4!CL:0002615;2.75e-08;3!CL:0002579;7.54e-08;3!CL:0000135;8.85e-08;3!CL:0000388;8.85e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.53e-20,76;CL:0002620,4.67e-14,23;CL:0000136,6.70e-13,15;CL:1000306,6.16e-10,4;CL:0002547,6.16e-10,4;CL:0000048,1.88e-08,427;CL:0002615,3.05e-08,3;CL:0000723,4.14e-08,433;CL:0002579,6.40e-08,3;CL:0000135,8.61e-08,3;CL:0000388,8.61e-08,3;CL:0000034,1.14e-07,441;CL:0000134,1.21e-07,354;CL:0002320,3.14e-07,361 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;3.96e-12;5!DOID:450;3.96e-12;5!DOID:66;3.96e-12;5!DOID:423;3.96e-12;5!DOID:0080000;3.96e-12;5!DOID:11722;3.96e-12;5 | |ontology_enrichment_disease_v019=DOID:17;3.96e-12;5!DOID:450;3.96e-12;5!DOID:66;3.96e-12;5!DOID:423;3.96e-12;5!DOID:0080000;3.96e-12;5!DOID:11722;3.96e-12;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,5.63e-12,5;DOID:450,5.63e-12,5;DOID:66,5.63e-12,5;DOID:423,5.63e-12,5;DOID:0080000,5.63e-12,5;DOID:11722,5.63e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!6.81e-09!45;UBERON:0002416!6.81e-09!45;UBERON:0002097!1.87e-07!40;UBERON:0003688!2.13e-07!6;UBERON:0002358!2.13e-07!6;UBERON:0003684!2.13e-07!6;UBERON:0001178!2.13e-07!6;UBERON:0000948!4.88e-07!24;UBERON:0005498!4.88e-07!24;UBERON:0004140!4.88e-07!24;UBERON:0009881!4.88e-07!24;UBERON:0004141!4.88e-07!24;UBERON:0003084!4.88e-07!24;UBERON:0007005!4.88e-07!24;UBERON:0004139!4.88e-07!24;UBERON:0004291!4.88e-07!24;UBERON:0004457!9.61e-07!12;UBERON:0000042!9.61e-07!12 | |ontology_enrichment_uberon=UBERON:0002199!6.81e-09!45;UBERON:0002416!6.81e-09!45;UBERON:0002097!1.87e-07!40;UBERON:0003688!2.13e-07!6;UBERON:0002358!2.13e-07!6;UBERON:0003684!2.13e-07!6;UBERON:0001178!2.13e-07!6;UBERON:0000948!4.88e-07!24;UBERON:0005498!4.88e-07!24;UBERON:0004140!4.88e-07!24;UBERON:0009881!4.88e-07!24;UBERON:0004141!4.88e-07!24;UBERON:0003084!4.88e-07!24;UBERON:0007005!4.88e-07!24;UBERON:0004139!4.88e-07!24;UBERON:0004291!4.88e-07!24;UBERON:0004457!9.61e-07!12;UBERON:0000042!9.61e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.86e-14;6!UBERON:0002358;1.86e-14;6!UBERON:0003684;1.86e-14;6!UBERON:0001178;1.86e-14;6!UBERON:0004457;3.31e-12;9!UBERON:0000042;3.31e-12;9!UBERON:0004797;1.16e-09;4!UBERON:0000415;1.16e-09;4!UBERON:0007240;1.16e-09;4!UBERON:0005742;1.16e-09;4!UBERON:0005734;1.16e-09;4!UBERON:0004664;1.16e-09;4!UBERON:0004663;1.16e-09;4!UBERON:0002199;2.45e-09;46!UBERON:0002416;2.45e-09;46!UBERON:0002097;1.11e-08;41!UBERON:0001013;1.84e-08;14!UBERON:0007846;8.85e-08;3!UBERON:0000043;8.85e-08;3!UBERON:0007845;8.85e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0003688;1.86e-14;6!UBERON:0002358;1.86e-14;6!UBERON:0003684;1.86e-14;6!UBERON:0001178;1.86e-14;6!UBERON:0004457;3.31e-12;9!UBERON:0000042;3.31e-12;9!UBERON:0004797;1.16e-09;4!UBERON:0000415;1.16e-09;4!UBERON:0007240;1.16e-09;4!UBERON:0005742;1.16e-09;4!UBERON:0005734;1.16e-09;4!UBERON:0004664;1.16e-09;4!UBERON:0004663;1.16e-09;4!UBERON:0002199;2.45e-09;46!UBERON:0002416;2.45e-09;46!UBERON:0002097;1.11e-08;41!UBERON:0001013;1.84e-08;14!UBERON:0007846;8.85e-08;3!UBERON:0000043;8.85e-08;3!UBERON:0007845;8.85e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.74e-14,6;UBERON:0002358,1.74e-14,6;UBERON:0003684,1.74e-14,6;UBERON:0001178,1.74e-14,6;UBERON:0002199,1.31e-12,46;UBERON:0002416,1.31e-12,46;UBERON:0002097,9.02e-12,41;UBERON:0004797,1.55e-11,7;UBERON:0000415,6.16e-10,4;UBERON:0007240,6.16e-10,4;UBERON:0005742,6.16e-10,4;UBERON:0005734,6.16e-10,4;UBERON:0004664,6.16e-10,4;UBERON:0004663,6.16e-10,4;UBERON:0004457,5.73e-09,12;UBERON:0000042,5.73e-09,12;UBERON:0001013,1.87e-08,14;UBERON:0007846,8.61e-08,3;UBERON:0000043,8.61e-08,3;UBERON:0007845,8.61e-08,3;UBERON:0002384,1.18e-07,371;UBERON:0004923,1.82e-07,66;UBERON:0003102,3.87e-07,99 | |||
|phase1_expression=1.2717486548939,8.56402095563933,7.75249222527841,3.00219895059391,5.36353313312745,6.97870819280295,0,1.26343974685366,1.04474251279935,0.245733936501509,0,0.218441372130172,1.58260186937072,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.639312809217652,0.361439152384566,1.00267582127178,2.462390822334,0.795285947051099,0.486634870302636,0,0.443458794925128,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53316637465883,0,0,0,0,0,2.48485975847659,2.91250176828533,1.85372853138506,12.9076479336966,3.19201543978521,3.36406560085384,1.06748995729705,0.74000264525148,2.17847724779836,0,0.326923806226917,0.454072282934794,0,0,0,0,0,0.23486899728753,0,0.280901613404497,0,0,0,1.18800285728205,0,0,0,0,0.125118519871964,0.277064115484183,0,0.919463387397059,0,0.226864366320042,4.48474089222155,2.34913127700424,3.17897851739343,3.00091096084402,3.09157587715317,1.8034837803194,0.558350568994769,3.20675031258406,2.24105111870757,3.5340728394176,1.47279837827679,2.42469085228218,7.10019185033229,1.81353776809752,0.847802961552438,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0.2933531432838,1.29271715757778,0,0,0.531876233169741,0,0.257207374262142,0,0.266422179016099,0,0.542621605391443,0.823240336780769,0.325736184293735,0.355391948742546,0,0,0,0.699810938274399,0,0,0,0.239624855491583,1.14861935834114,0,2.46128221334885,0.821905290201534,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.813795071099207,0.207970861530807,1.07057393278297,0.630809660135739,0,0.601892199455438,4.5481500811197,0,0.664225598535437,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,11.6504807657348,2.11673205330776,2.48107807818777,0.920771839728375,3.36792113319688,7.04765320906355,1.53512174720011,8.84696566289841,4.45254199334973,0.462629081407967,0.532685175939381,0.246381468041427,0,0.581051892299796,0,0,0,1.03333003348146,0.546273504020151,2.09799063935079,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457847324091717,0.082509499920588,0,0.650060246036521,4.82051789532479,0,0,0.307007349452259,0,0.214840489736547,1.74020032697074,0.255679882248303,0.178064071293475,0,0.192190067365106,0,0.10115778085555,1.39453664789186,12.277681526395,0,0,0,0,0.18532421910392,1.43124886741991,0,0.316379424718726,0.953150969619124,0,0.42793898803392,0,0,0.359744915166629,1.37268514868027,0.589062011728432,0.202182481573316,0,0,0,0.243713489631284,0,0.409499734223957,1.41405431953713,2.26016233240486,0,0.66343897524122,0.438450885253763,0,0,0,0.6196469961995,0.563391205064483,0,0.589494246078727,0.7133421029625,0.354761064070598,1.89996871767898,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,1.22864280839693,0,0,0,0,0,0.796991953004279,0,0,0,0,4.66559381492711,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846452843541768,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.34823682632161,0.873633341210151,0.343972064943233,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0,0.400794101257669,0.213452994739353,0,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,2.79282401272254,0.229160424011684,1.43574604915363,0.199679000498991,0,0,0,1.08089965062721,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25799761052228,0.864221491201268,2.93928624098468,0,0,1.70388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,1.8697064787778,1.66441758450784,0.378806010550178,2.51567901752575,0,1.60188047877847,3.17584939902802,0.777186002913902,0.443565449968902,0,0,0.155262956876259,0.829412415681711,1.59505028734797,0.521745061811734,1.80309130796662,3.04644169735036,0,0,0.537052785212442,0.928067519756987,0,0.800055529326307,1.03018711554838,1.6837474438296,0,0,0.214441591374926,0,1.13352962756136,0.694567422971502,0,1.61179956973339,0.308801447160972,2.41212454536578,0,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0.655219697692825,0.737318726261158,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,1.41070377476274,0.3062454773532,0,0,0,0.205116364240755,0,0,0,0,0,0,0.183428598521679,0,0.762764190934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|short_description=p@chr3:112357848..112357858,- | |short_description=p@chr3:112357848..112357858,- | ||
}} | }} |
Revision as of 15:04, 18 November 2012
Short description: | p@chr3:112357848..112357858, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:112357848..112357858, - |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.53e-20 | 76 |
skin fibroblast | 4.67e-14 | 23 |
fat cell | 6.70e-13 | 15 |
fibroblast of tunica adventitia of artery | 6.16e-10 | 4 |
fibroblast of the aortic adventitia | 6.16e-10 | 4 |
multi fate stem cell | 1.88e-08 | 427 |
adipocyte of omentum tissue | 3.05e-08 | 3 |
somatic stem cell | 4.14e-08 | 433 |
omentum preadipocyte | 6.40e-08 | 3 |
fibrocyte | 8.61e-08 | 3 |
tendon cell | 8.61e-08 | 3 |
stem cell | 1.14e-07 | 441 |
mesenchymal cell | 1.21e-07 | 354 |
connective tissue cell | 3.14e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.74e-14 | 6 |
peritoneum | 1.74e-14 | 6 |
abdominal cavity | 1.74e-14 | 6 |
visceral peritoneum | 1.74e-14 | 6 |
integument | 1.31e-12 | 46 |
integumental system | 1.31e-12 | 46 |
skin of body | 9.02e-12 | 41 |
blood vessel layer | 1.55e-11 | 7 |
artery wall | 6.16e-10 | 4 |
tunica adventitia of artery | 6.16e-10 | 4 |
adventitia | 6.16e-10 | 4 |
tunica adventitia of blood vessel | 6.16e-10 | 4 |
aorta tunica adventitia | 6.16e-10 | 4 |
aorta wall | 6.16e-10 | 4 |
cavity lining | 5.73e-09 | 12 |
serous membrane | 5.73e-09 | 12 |
adipose tissue | 1.87e-08 | 14 |
dense regular connective tissue | 8.61e-08 | 3 |
tendon | 8.61e-08 | 3 |
regular connective tissue | 8.61e-08 | 3 |
connective tissue | 1.18e-07 | 371 |
organ component layer | 1.82e-07 | 66 |
surface structure | 3.87e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.63e-12 | 5 |
myotonic disease | 5.63e-12 | 5 |
muscle tissue disease | 5.63e-12 | 5 |
myopathy | 5.63e-12 | 5 |
muscular disease | 5.63e-12 | 5 |
myotonic dystrophy | 5.63e-12 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.