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MCL coexpression mm9:688: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004923!3.15e-11!24;UBERON:0009854!2.52e-09!23;UBERON:0009856!2.52e-09!23;UBERON:0005409!4.07e-09!47;UBERON:0002107!4.50e-09!22;UBERON:0007499!4.50e-09!22;UBERON:0006925!4.50e-09!22;UBERON:0009497!4.50e-09!22;UBERON:0000015!4.50e-09!22;UBERON:0002423!4.50e-09!22;UBERON:0006235!4.50e-09!22;UBERON:0008835!4.50e-09!22;UBERON:0003894!4.50e-09!22;UBERON:0004161!4.50e-09!22;UBERON:0008836!4.50e-09!22;UBERON:0000160!9.46e-09!31;UBERON:0000344!1.05e-08!15;UBERON:0002365!1.48e-08!25;UBERON:0002330!1.48e-08!25;UBERON:0005172!1.81e-08!49;UBERON:0005173!1.81e-08!49;UBERON:0002417!1.81e-08!49;UBERON:0000916!1.81e-08!49;UBERON:0004119!5.26e-08!118;UBERON:0000925!5.26e-08!118;UBERON:0006595!5.26e-08!118;UBERON:0001007!7.14e-08!116;UBERON:0001555!7.14e-08!116;UBERON:0007026!7.14e-08!116;UBERON:0001242!7.19e-08!13;UBERON:0000060!7.19e-08!13;UBERON:0001262!7.19e-08!13;UBERON:0004786!7.19e-08!13;UBERON:0004921!2.94e-07!114;UBERON:0003914!5.97e-07!47
}}
}}

Revision as of 21:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:39862053..39862066,-p1@Slc16a10
Mm9::chr19:12870006..12870057,-p@chr19:12870006..12870057
-
Mm9::chr19:29141761..29141787,+p2@Gm9895
Mm9::chr19:29141797..29141817,+p1@Gm9895
Mm9::chr19:29141831..29141843,+p1@uc008hcz.1
Mm9::chr4:43053120..43053144,-p4@B230312A22Rik
Mm9::chr6:87761765..87761796,-p1@Rab43
Mm9::chr7:128125774..128125819,-p1@Cdr2
Mm9::chr8:126506921..126506933,+p@chr8:126506921..126506933
+
Mm9::chr9:107996988..107997027,+p@chr9:107996988..107997027
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
organ component layer3.15e-1124
digestive tract diverticulum2.52e-0923
sac2.52e-0923
gastrointestinal system4.07e-0947
liver4.50e-0922
epithelial sac4.50e-0922
digestive gland4.50e-0922
epithelium of foregut-midgut junction4.50e-0922
anatomical boundary4.50e-0922
hepatobiliary system4.50e-0922
foregut-midgut junction4.50e-0922
hepatic diverticulum4.50e-0922
liver primordium4.50e-0922
septum transversum4.50e-0922
liver bud4.50e-0922
intestine9.46e-0931
mucosa1.05e-0815
exocrine gland1.48e-0825
exocrine system1.48e-0825
abdomen element1.81e-0849
abdominal segment element1.81e-0849
abdominal segment of trunk1.81e-0849
abdomen1.81e-0849
endoderm-derived structure5.26e-08118
endoderm5.26e-08118
presumptive endoderm5.26e-08118
digestive system7.14e-08116
digestive tract7.14e-08116
primitive gut7.14e-08116
intestinal mucosa7.19e-0813
anatomical wall7.19e-0813
wall of intestine7.19e-0813
gastrointestinal system mucosa7.19e-0813
subdivision of digestive tract2.94e-07114
epithelial tube5.97e-0747


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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