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|gostat_on_MCL_coexpression=GO:0008195;phosphatidate phosphatase activity;0.0269507812482835;64898!
|gostat_on_MCL_coexpression=GO:0008195;phosphatidate phosphatase activity;0.0269507812482835;64898!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!7.10e-14!22;UBERON:0007499!7.10e-14!22;UBERON:0006925!7.10e-14!22;UBERON:0009497!7.10e-14!22;UBERON:0000015!7.10e-14!22;UBERON:0002423!7.10e-14!22;UBERON:0006235!7.10e-14!22;UBERON:0008835!7.10e-14!22;UBERON:0003894!7.10e-14!22;UBERON:0004161!7.10e-14!22;UBERON:0008836!7.10e-14!22;UBERON:0004119!1.30e-13!118;UBERON:0000925!1.30e-13!118;UBERON:0006595!1.30e-13!118;UBERON:0001007!1.31e-13!116;UBERON:0001555!1.31e-13!116;UBERON:0007026!1.31e-13!116;UBERON:0009854!3.15e-13!23;UBERON:0009856!3.15e-13!23;UBERON:0002365!4.10e-13!25;UBERON:0002330!4.10e-13!25;UBERON:0004921!1.31e-12!114;UBERON:0005172!4.38e-12!49;UBERON:0005173!4.38e-12!49;UBERON:0002417!4.38e-12!49;UBERON:0000916!4.38e-12!49;UBERON:0005409!1.08e-11!47;UBERON:0009569!8.96e-10!66;UBERON:0000160!1.42e-09!31;UBERON:0005256!3.28e-09!45;UBERON:0004923!5.52e-08!24;UBERON:0003104!4.87e-07!61;UBERON:0009142!4.87e-07!61
}}
}}

Revision as of 18:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:71553913..71553931,+p5@Lpin2
Mm9::chr17:71553987..71554033,+p3@Lpin2
Mm9::chr17:71554038..71554041,+p10@Lpin2
Mm9::chr5:136165053..136165083,+p1@Por


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008195phosphatidate phosphatase activity0.0269507812482835



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver7.10e-1422
epithelial sac7.10e-1422
digestive gland7.10e-1422
epithelium of foregut-midgut junction7.10e-1422
anatomical boundary7.10e-1422
hepatobiliary system7.10e-1422
foregut-midgut junction7.10e-1422
hepatic diverticulum7.10e-1422
liver primordium7.10e-1422
septum transversum7.10e-1422
liver bud7.10e-1422
endoderm-derived structure1.30e-13118
endoderm1.30e-13118
presumptive endoderm1.30e-13118
digestive system1.31e-13116
digestive tract1.31e-13116
primitive gut1.31e-13116
digestive tract diverticulum3.15e-1323
sac3.15e-1323
exocrine gland4.10e-1325
exocrine system4.10e-1325
subdivision of digestive tract1.31e-12114
abdomen element4.38e-1249
abdominal segment element4.38e-1249
abdominal segment of trunk4.38e-1249
abdomen4.38e-1249
gastrointestinal system1.08e-1147
subdivision of trunk8.96e-1066
intestine1.42e-0931
trunk mesenchyme3.28e-0945
organ component layer5.52e-0824
mesenchyme4.87e-0761
entire embryonic mesenchyme4.87e-0761


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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