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MCL coexpression mm9:1942: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!4.22e-23!32;CL:0002032!4.22e-23!32;CL:0000037!4.22e-23!32;CL:0000566!4.22e-23!32;CL:0000837!4.22e-23!32;CL:0002320!4.06e-16!46;CL:0000134!4.06e-16!46;CL:0002031!3.87e-14!25;CL:0000838!3.53e-13!12;CL:0000219!6.60e-13!54;CL:0000049!3.56e-12!19;CL:0000542!5.13e-12!13;CL:0000051!5.13e-12!13;CL:0000084!2.95e-11!11;CL:0000827!2.95e-11!11;CL:0002242!2.09e-09!16;CL:0000553!2.46e-09!6;CL:0000556!2.46e-09!6;CL:0000738!9.60e-09!17;CL:0002087!9.60e-09!17;CL:0000791!8.79e-08!9;CL:0000789!8.79e-08!9;CL:0002420!8.79e-08!9;CL:0002419!8.79e-08!9;CL:0000790!8.79e-08!9;CL:0000763!1.43e-07!16;CL:0000034!3.40e-07!97
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!2.83e-18!48;UBERON:0002405!2.83e-18!48;UBERON:0002384!4.06e-16!46;UBERON:0002390!1.49e-14!45;UBERON:0003061!1.49e-14!45;UBERON:0004177!3.91e-08!29;UBERON:0005057!3.91e-08!29;UBERON:0002371!1.43e-07!16
}}
}}

Revision as of 17:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:104442953..104443000,+p3@Myl4
Mm9::chr13:112791642..112791651,+p@chr13:112791642..112791651
+
Mm9::chr5:128096070..128096088,+p@chr5:128096070..128096088
+
Mm9::chr5:148152844..148152849,+p@chr5:148152844..148152849
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell4.22e-2332
hematopoietic oligopotent progenitor cell4.22e-2332
hematopoietic stem cell4.22e-2332
angioblastic mesenchymal cell4.22e-2332
hematopoietic multipotent progenitor cell4.22e-2332
connective tissue cell4.06e-1646
mesenchymal cell4.06e-1646
hematopoietic lineage restricted progenitor cell3.87e-1425
lymphoid lineage restricted progenitor cell3.53e-1312
motile cell6.60e-1354
common myeloid progenitor3.56e-1219
lymphocyte5.13e-1213
common lymphoid progenitor5.13e-1213
T cell2.95e-1111
pro-T cell2.95e-1111
nucleate cell2.09e-0916
megakaryocyte progenitor cell2.46e-096
megakaryocyte2.46e-096
leukocyte9.60e-0917
nongranular leukocyte9.60e-0917
mature alpha-beta T cell8.79e-089
alpha-beta T cell8.79e-089
immature T cell8.79e-089
mature T cell8.79e-089
immature alpha-beta T cell8.79e-089
myeloid cell1.43e-0716
stem cell3.40e-0797

Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.83e-1848
immune system2.83e-1848
connective tissue4.06e-1646
hematopoietic system1.49e-1445
blood island1.49e-1445
hemopoietic organ3.91e-0829
immune organ3.91e-0829
bone marrow1.43e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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