FFCP PHASE2:Hg19::chr12:66218183..66218209,+
From FANTOM5_SSTAR
Jump to: navigation, search
| Short description: | p4@HMGA2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_HMGA2_5end |
| Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
| Association with transcript: | -30bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
| EntrezGene: | HMGA2 |
| HGNC: | 5009 |
| UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@HMGA2 |
|---|
0
25
50
75
100
125
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 3.50e-29 | 250 |
| epithelial cell | 5.42e-16 | 253 |
| electrically responsive cell | 2.74e-13 | 61 |
| electrically active cell | 2.74e-13 | 61 |
| muscle precursor cell | 4.53e-13 | 58 |
| myoblast | 4.53e-13 | 58 |
| multi-potent skeletal muscle stem cell | 4.53e-13 | 58 |
| mesodermal cell | 6.48e-13 | 121 |
| muscle cell | 4.27e-12 | 55 |
| smooth muscle cell | 2.76e-08 | 43 |
Showing 1 to 10 of 18 entries
| Ontology term | p-value | n |
|---|---|---|
| unilaminar epithelium | 4.75e-18 | 148 |
| mesenchyme | 3.50e-17 | 160 |
| entire embryonic mesenchyme | 3.50e-17 | 160 |
| cell layer | 7.87e-17 | 309 |
| multilaminar epithelium | 4.53e-16 | 83 |
| epithelial vesicle | 8.45e-16 | 78 |
| epithelium | 1.00e-15 | 306 |
| epithelial tube | 4.39e-15 | 117 |
| trunk mesenchyme | 2.46e-14 | 122 |
| somite | 1.81e-13 | 71 |
Showing 1 to 10 of 63 entries
