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UBERON:0001474

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Name:bone
Definition:"Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator]
Xrefs:
links:

AAO:0000047
AEO:0000082
BTO:0000140
EFO:0000298
EHDAA2:0003082
ENVO:00002039
EV:0100140
FMA:30317
FMA:5018
GAID:92
galen:Bone
MA:0001459
MAT:0000299
MIAA:0000299
ncithesaurus:Bone
OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
SCTID:272673000
TAO:0001514
VHOG:0001190
XAO:0000169

ZFA:0001514
Synonyms: "bone organ" EXACT []
Comments:H&W - a vascularized, supporting skeletal tissue, which also can form ectopically outside the skeleton. Bone consists of cells and a mineralized extracellular matrix that is permeated by canals (canaliculi) that contain osteocyte processes (Plate 2). Bone is deposited by bone-forming cells (osteoblasts), which, when they cease dividing, transform into osteocytes. The first bone matrix deposited is unmineralized and is known as osteoid (Plate 3). Subsequently, osteoid is impregnated with hydroxyapatite to form the mineralized tissue we know as bone, a tissue that is modeled, remodeled, and/or removed by mono- or multinucleated osteoclasts (and sometimes by osteocytes)
Alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
disjoint_from:UBERON:0001630(muscle organ),UBERON:0007823()
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0002495 (long bone),UBERON:0002513 (endochondral bone),UBERON:0002514 (intramembranous bone),UBERON:0007842 (membrane bone),UBERON:0007914 (head or neck bone),UBERON:0008001 (irregular bone),UBERON:0008202 (bone of hip region),UBERON:0010740 (bone of appendage girdle complex),FF:0100372 (bone cancer cell)
disjoint from:UBERON:0000982 (skeletal joint),UBERON:0001434 (skeletal system)
part of:CL:0000092 (osteoclast),CL:0001035 (bone cell),UBERON:0002371 (bone marrow),UBERON:0002481 (bone tissue),UBERON:0005913 (zone of bone organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001474 (bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.59e-110FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2p@chr1:161187824..161187847, +
9.59e-110FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2p@chr1:161187824..161187847, +
1.51e-105FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73p@chr16:50313426..50313459, +
1.51e-105FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73p@chr16:50313426..50313459, +
1.73e-105FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48p@chr1:161188661..161188679, +
1.73e-105FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48p@chr1:161188661..161188679, +
6.7e-104FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60ap7@EMILIN2
6.7e-104FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60ap7@EMILIN2
8.62e-104FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121p@chr7:77050554..77050601, +
8.62e-104FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121p@chr7:77050554..77050601, +
1.56e-102FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4bp@chr1:161188746..161188758, +
1.56e-102FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4bp@chr1:161188746..161188758, +
4.16e-102FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873p@chr17:7482481..7482508, -
4.16e-102FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873p@chr17:7482481..7482508, -
1.82e-101FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674p5@IFI30
1.82e-101FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674p5@IFI30
4.93e-100FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872p@chr4:3387239..3387324, -
4.93e-100FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872p@chr4:3387239..3387324, -
5.08e-99FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618p@chr7:2832730..2832791, +
5.08e-99FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618p@chr7:2832730..2832791, +
2.26e-98FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75babp15@MGAT1
2.26e-98FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75babp15@MGAT1
8.47e-98FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8p7@IFI30
8.47e-98FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8p7@IFI30
1.3e-97FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639p8@CHI3L2
1.3e-97FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639p8@CHI3L2
2.53e-97FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47p1@AK126179
2.53e-97FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47p1@AK126179
1.58e-96FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642p@chr2:145429606..145429658, +
1.58e-96FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642p@chr2:145429606..145429658, +
5.46e-96FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6dp@chr19:18286116..18286156, +
5.46e-96FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6dp@chr19:18286116..18286156, +
8.18e-96FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6p2@CD300C
8.18e-96FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6p2@CD300C
4.86e-95FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bfp1@CYP1B1-AS1
4.86e-95FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bfp1@CYP1B1-AS1
7.97e-95FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7p@chr15:65174546..65174583, -
7.97e-95FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7p@chr15:65174546..65174583, -
1.31e-94FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0cp7@FNIP2
1.31e-94FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0cp7@FNIP2
3.51e-94FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbdep@chr4:185314125..185314143, -
3.51e-94FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbdep@chr4:185314125..185314143, -
5.01e-94FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2p7@RNF13
5.01e-94FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2p7@RNF13
1.06e-93FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416p@chr19:52299474..52299504, -
1.06e-93FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416p@chr19:52299474..52299504, -
1.95e-93FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610fp1@ENST00000425320
1.95e-93FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610fp1@ENST00000425320
2.7e-93FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765p@chr1:161188686..161188721, +
2.7e-93FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765p@chr1:161188686..161188721, +
4.24e-93FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344p@chr2:119726719..119726744, +
4.24e-93FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344p@chr2:119726719..119726744, +
6.07e-93FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3p@chr19:18288064..18288080, +
6.07e-93FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3p@chr19:18288064..18288080, +
7.29e-93FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008p@chr10:73648356..73648408, -
7.29e-93FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008p@chr10:73648356..73648408, -
9.56e-93FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205p@chr4:185314151..185314178, -
9.56e-93FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205p@chr4:185314151..185314178, -
3.92e-92FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6p@chr4:185314188..185314207, -
3.92e-92FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6p@chr4:185314188..185314207, -
5.8e-92FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03p@chrX:153286067..153286101, -
5.8e-92FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03p@chrX:153286067..153286101, -
7.64e-92FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86cp@chrX:37664331..37664352, +
7.64e-92FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86cp@chrX:37664331..37664352, +
1.15e-91FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2p2@ZEB2-AS1
1.15e-91FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2p2@ZEB2-AS1
1.59e-91FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3dp8@CTSS
1.59e-91FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3dp8@CTSS
1.8e-91FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986p@chr8:116588888..116588904, +
1.8e-91FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986p@chr8:116588888..116588904, +
2.14e-91FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03p4@RNF115
2.14e-91FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03p4@RNF115
2.25e-91FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaap@chr1:161188826..161188842, +
2.25e-91FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaap@chr1:161188826..161188842, +
4.14e-91FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063p@chr2:129283966..129283970, +
4.14e-91FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063p@chr2:129283966..129283970, +
8.75e-91FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8dfp@chr1:26602990..26603008, +
8.75e-91FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8dfp@chr1:26602990..26603008, +
9.66e-91FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7dp@chr19:18285955..18285972, +
9.66e-91FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7dp@chr19:18285955..18285972, +
1.01e-90FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234p@chr1:108593061..108593077, +
1.01e-90FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234p@chr1:108593061..108593077, +
1.02e-90FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7bp5@CU676849, p5@CU689079
1.02e-90FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7bp5@CU676849, p5@CU689079
2.54e-90FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1p@chr20:1517991..1518011, -
2.54e-90FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1p@chr20:1517991..1518011, -
7.24e-90FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808aep@chr19:18283959..18283993, +
7.24e-90FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808aep@chr19:18283959..18283993, +
1.14e-89FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4p6@IFI30
1.14e-89FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4p6@IFI30
1.43e-89FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91p12@MGAT1
1.43e-89FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91p12@MGAT1
2.02e-89FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19p4@ST18
2.02e-89FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19p4@ST18
2.61e-89FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90dfp4@EIF2AK1
2.61e-89FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90dfp4@EIF2AK1
3.56e-89FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705fp@chr17:7483714..7483726, +
3.56e-89FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705fp@chr17:7483714..7483726, +
7.55e-89FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559p@chr19:51625924..51625942, +
7.55e-89FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559p@chr19:51625924..51625942, +

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