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MCL coexpression mm9:80

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:3001248..3001289,+p@chr11:3001248..3001289
+
Mm9::chr11:3001283..3001292,-p@chr11:3001283..3001292
-
Mm9::chr11:3001727..3001739,+p@chr11:3001727..3001739
+
Mm9::chr11:3002276..3002279,+p@chr11:3002276..3002279
+
Mm9::chr11:3004247..3004290,+p@chr11:3004247..3004290
+
Mm9::chr11:3004719..3004730,+p@chr11:3004719..3004730
+
Mm9::chr11:55209010..55209019,-p@chr11:55209010..55209019
-
Mm9::chr11:94812981..94812986,+p@chr11:94812981..94812986
+
Mm9::chr12:3110066..3110084,-p@chr12:3110066..3110084
-
Mm9::chr12:48934950..48934962,-p@chr12:48934950..48934962
-
Mm9::chr12:48935035..48935049,+p@chr12:48935035..48935049
+
Mm9::chr12:48935068..48935078,-p@chr12:48935068..48935078
-
Mm9::chr12:68160884..68160910,-p@chr12:68160884..68160910
-
Mm9::chr12:75904852..75904862,+p@chr12:75904852..75904862
+
Mm9::chr12:75904955..75904958,-p@chr12:75904955..75904958
-
Mm9::chr12:75905257..75905268,+p@chr12:75905257..75905268
+
Mm9::chr13:6403959..6403978,-p@chr13:6403959..6403978
-
Mm9::chr13:77578167..77578170,+p@chr13:77578167..77578170
+
Mm9::chr13:77578235..77578285,+p@chr13:77578235..77578285
+
Mm9::chr13:77578273..77578319,-p@chr13:77578273..77578319
-
Mm9::chr15:97806449..97806482,-p@chr15:97806449..97806482
-
Mm9::chr15:97806539..97806550,-p@chr15:97806539..97806550
-
Mm9::chr15:97806574..97806585,-p@chr15:97806574..97806585
-
Mm9::chr18:56099129..56099139,+p@chr18:56099129..56099139
+
Mm9::chr18:56099221..56099241,+p@chr18:56099221..56099241
+
Mm9::chr2:76558017..76558028,-p@chr2:76558017..76558028
-
Mm9::chr2:98502479..98502502,+p@chr2:98502479..98502502
+
Mm9::chr2:98502598..98502619,+p@chr2:98502598..98502619
+
Mm9::chr2:98502630..98502656,-p@chr2:98502630..98502656
-
Mm9::chr2:98502657..98502667,+p@chr2:98502657..98502667
+
Mm9::chr2:98502831..98502857,+p@chr2:98502831..98502857
+
Mm9::chr2:98502896..98502911,+p@chr2:98502896..98502911
+
Mm9::chr2:98502913..98502935,+p@chr2:98502913..98502935
+
Mm9::chr2:98503021..98503039,-p@chr2:98503021..98503039
-
Mm9::chr2:98503062..98503077,-p@chr2:98503062..98503077
-
Mm9::chr2:98503098..98503118,+p@chr2:98503098..98503118
+
Mm9::chr2:98503132..98503150,-p@chr2:98503132..98503150
-
Mm9::chr2:98503916..98503926,+p@chr2:98503916..98503926
+
Mm9::chr2:98503957..98503962,+p@chr2:98503957..98503962
+
Mm9::chr2:98503975..98504002,+p@chr2:98503975..98504002
+
Mm9::chr2:98504012..98504030,+p@chr2:98504012..98504030
+
Mm9::chr2:98504037..98504048,-p@chr2:98504037..98504048
-
Mm9::chr2:98504172..98504205,+p@chr2:98504172..98504205
+
Mm9::chr2:98504201..98504231,-p@chr2:98504201..98504231
-
Mm9::chr2:98505280..98505291,+p@chr2:98505280..98505291
+
Mm9::chr2:98505312..98505328,-p@chr2:98505312..98505328
-
Mm9::chr2:98506423..98506433,+p@chr2:98506423..98506433
+
Mm9::chr2:98506437..98506455,+p@chr2:98506437..98506455
+
Mm9::chr2:98506438..98506444,-p@chr2:98506438..98506444
-
Mm9::chr2:98506477..98506488,-p@chr2:98506477..98506488
-
Mm9::chr2:98506609..98506620,+p@chr2:98506609..98506620
+
Mm9::chr2:98506621..98506632,+p@chr2:98506621..98506632
+
Mm9::chr2:98506661..98506685,-p@chr2:98506661..98506685
-
Mm9::chr2:98506816..98506850,-p@chr2:98506816..98506850
-
Mm9::chr2:98506906..98506941,+p@chr2:98506906..98506941
+
Mm9::chr2:98506946..98506948,-p@chr2:98506946..98506948
-
Mm9::chr2:98507023..98507046,-p@chr2:98507023..98507046
-
Mm9::chr2:98507171..98507188,-p@chr2:98507171..98507188
-
Mm9::chr2:98507205..98507234,+p@chr2:98507205..98507234
+
Mm9::chr2:98507234..98507266,-p@chr2:98507234..98507266
-
Mm9::chr2:98507383..98507413,+p@chr2:98507383..98507413
+
Mm9::chr2:98507421..98507439,-p@chr2:98507421..98507439
-
Mm9::chr3:56379612..56379623,+p@chr3:56379612..56379623
+
Mm9::chr3:99785240..99785250,-p@chr3:99785240..99785250
-
Mm9::chr4:3016687..3016689,+p@chr4:3016687..3016689
+
Mm9::chr4:3016715..3016734,-p@chr4:3016715..3016734
-
Mm9::chr4:3016941..3016967,-p@chr4:3016941..3016967
-
Mm9::chr4:3017362..3017381,-p@chr4:3017362..3017381
-
Mm9::chr4:3017450..3017457,+p@chr4:3017450..3017457
+
Mm9::chr4:70039176..70039193,+p@chr4:70039176..70039193
+
Mm9::chr4:70039209..70039228,-p@chr4:70039209..70039228
-
Mm9::chr4:70039209..70039250,+p@chr4:70039209..70039250
+
Mm9::chr4:70039253..70039262,+p@chr4:70039253..70039262
+
Mm9::chr4:70039253..70039296,-p@chr4:70039253..70039296
-
Mm9::chr6:103264626..103264643,+p@chr6:103264626..103264643
+
Mm9::chr6:4490674..4490679,+p@chr6:4490674..4490679
+
Mm9::chr6:4490929..4490946,+p@chr6:4490929..4490946
+
Mm9::chr7:134357720..134357758,+p@chr7:134357720..134357758
+
Mm9::chr7:134357764..134357775,+p@chr7:134357764..134357775
+
Mm9::chr7:60250576..60250578,-p@chr7:60250576..60250578
-
Mm9::chr8:101406443..101406453,+p@chr8:101406443..101406453
+
Mm9::chr8:24205973..24205991,-p@chr8:24205973..24205991
-
Mm9::chr8:24206019..24206035,-p@chr8:24206019..24206035
-
Mm9::chr8:24206098..24206110,+p17@Ank1
Mm9::chr8:24206124..24206153,-p@chr8:24206124..24206153
-
Mm9::chr9:24346548..24346568,-p@chr9:24346548..24346568
-
Mm9::chr9:3000091..3000120,+p@chr9:3000091..3000120
+
Mm9::chr9:3000134..3000163,+p@chr9:3000134..3000163
+
Mm9::chr9:3000190..3000216,+p@chr9:3000190..3000216
+
Mm9::chr9:3002328..3002361,+p@chr9:3002328..3002361
+
Mm9::chr9:3002364..3002386,-p@chr9:3002364..3002386
-
Mm9::chr9:3002960..3002984,+p@chr9:3002960..3002984
+
Mm9::chr9:3002991..3003011,-p@chr9:3002991..3003011
-
Mm9::chr9:3004490..3004523,+p@chr9:3004490..3004523
+
Mm9::chr9:3004794..3004817,+p@chr9:3004794..3004817
+
Mm9::chr9:3004821..3004841,-p@chr9:3004821..3004841
-
Mm9::chr9:3005125..3005137,+p@chr9:3005125..3005137
+
Mm9::chr9:3005620..3005636,+p@chr9:3005620..3005636
+
Mm9::chr9:3005917..3005928,+p@chr9:3005917..3005928
+
Mm9::chr9:3015269..3015302,+p1@ENSMUST00000099050
Mm9::chr9:3015698..3015722,+p@chr9:3015698..3015722
+
Mm9::chr9:3015726..3015745,-p@chr9:3015726..3015745
-
Mm9::chr9:3016320..3016336,+p@chr9:3016320..3016336
+
Mm9::chr9:3016878..3016900,+p@chr9:3016878..3016900
+
Mm9::chr9:3016905..3016926,-p@chr9:3016905..3016926
-
Mm9::chr9:3017525..3017543,+p@chr9:3017525..3017543
+
Mm9::chr9:3018961..3018980,+p@chr9:3018961..3018980
+
Mm9::chr9:3018988..3019010,-p@chr9:3018988..3019010
-
Mm9::chr9:3021256..3021283,+p@chr9:3021256..3021283
+
Mm9::chr9:3022177..3022189,+p@chr9:3022177..3022189
+
Mm9::chr9:3022198..3022225,-p@chr9:3022198..3022225
-
Mm9::chr9:3022736..3022762,+p@chr9:3022736..3022762
+
Mm9::chr9:3022909..3022917,-p@chr9:3022909..3022917
-
Mm9::chr9:3024670..3024681,-p@chr9:3024670..3024681
-
Mm9::chr9:3024740..3024777,+p@chr9:3024740..3024777
+
Mm9::chr9:3024775..3024789,-p@chr9:3024775..3024789
-
Mm9::chr9:3025472..3025490,+p@chr9:3025472..3025490
+
Mm9::chr9:3025495..3025532,+p@chr9:3025495..3025532
+
Mm9::chr9:3025531..3025558,-p@chr9:3025531..3025558
-
Mm9::chr9:3025608..3025628,+p@chr9:3025608..3025628
+
Mm9::chr9:3025853..3025873,+p@chr9:3025853..3025873
+
Mm9::chr9:3026477..3026495,+p@chr9:3026477..3026495
+
Mm9::chr9:3026652..3026682,+p@chr9:3026652..3026682
+
Mm9::chr9:3026737..3026769,+p@chr9:3026737..3026769
+
Mm9::chr9:3026768..3026788,-p@chr9:3026768..3026788
-
Mm9::chr9:3027119..3027145,+p@chr9:3027119..3027145
+
Mm9::chr9:3027439..3027468,+p@chr9:3027439..3027468
+
Mm9::chr9:3027475..3027488,-p@chr9:3027475..3027488
-
Mm9::chr9:3029371..3029395,+p@chr9:3029371..3029395
+
Mm9::chr9:3029402..3029420,-p@chr9:3029402..3029420
-
Mm9::chr9:3030155..3030176,+p1@ENSMUST00000099042
Mm9::chr9:3031884..3031894,+p1@ENSMUST00000099056
Mm9::chr9:3032347..3032397,+p@chr9:3032347..3032397
+
Mm9::chr9:3034197..3034209,+p1@ENSMUST00000170073
Mm9::chr9:3035877..3035903,+p@chr9:3035877..3035903
+
Mm9::chr9:3035912..3035922,-p@chr9:3035912..3035922
-
Mm9::chr9:3036070..3036098,+p@chr9:3036070..3036098
+
Mm9::chr9:3036093..3036128,-p@chr9:3036093..3036128
-
Mm9::chr9:3036315..3036343,+p@chr9:3036315..3036343
+
Mm9::chr9:3036347..3036373,-p@chr9:3036347..3036373
-
Mm9::chr9:3036356..3036387,+p@chr9:3036356..3036387
+
Mm9::chr9:3036386..3036397,-p@chr9:3036386..3036397
-
Mm9::chr9:3038013..3038034,+p@chr9:3038013..3038034
+
Mm9::chr9:35112822..35112851,-p@chr9:35112822..35112851
-
Mm9::chr9:35112851..35112875,+p@chr9:35112851..35112875
+
Mm9::chr9:35112882..35112910,-p@chr9:35112882..35112910
-
Mm9::chr9:35112900..35112920,+p@chr9:35112900..35112920
+
Mm9::chr9:35112939..35112950,-p@chr9:35112939..35112950
-
Mm9::chr9:35112951..35112956,-p@chr9:35112951..35112956
-
Mm9::chr9:35112960..35112975,+p@chr9:35112960..35112975
+
Mm9::chr9:35113013..35113053,+p@chr9:35113013..35113053
+
Mm9::chr9:35113014..35113034,-p@chr9:35113014..35113034
-
Mm9::chr9:35113040..35113076,-p@chr9:35113040..35113076
-
Mm9::chrX:139917572..139917600,+p@chrX:139917572..139917600
+
Mm9::chrY:2898756..2898767,-p@chrY:2898756..2898767
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030020extracellular matrix structural constituent conferring tensile strength0.000219408547866333
GO:0005581collagen0.000219408547866333
GO:0005201extracellular matrix structural constituent0.000407180314410167
GO:0006817phosphate transport0.000407180314410167
GO:0006811ion transport0.000444954605153175
GO:0044420extracellular matrix part0.00051346196154875
GO:0015698inorganic anion transport0.00102119917903084
GO:0006820anion transport0.00125647242166672
GO:0005578proteinaceous extracellular matrix0.00314956257399098
GO:0006810transport0.00764472659050462
GO:0051234establishment of localization0.00764472659050462
GO:0051179localization0.00890739443574867
GO:0022610biological adhesion0.00890739443574867
GO:0007155cell adhesion0.00890739443574867
GO:0016529sarcoplasmic reticulum0.0107682082345419
GO:0016528sarcoplasm0.0117751456770807



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte progenitor cell1.82e-076
megakaryocyte1.82e-076

Uber Anatomy
Ontology termp-valuen
occipital lobe5.22e-1010
visual cortex5.22e-1010
neocortex5.22e-1010


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10
MA0004.10.0571814
MA0006.12.4874e-06
MA0007.10.000421139
MA0009.10.0270547
MA0014.10
MA0017.10.000279253
MA0019.10.0286304
MA0024.10.0194193
MA0025.10.0989912
MA0027.11.24237
MA0028.13.94058e-06
MA0029.10.0162428
MA0030.10.0171614
MA0031.10.0125925
MA0038.131.1052
MA0040.10.121956
MA0041.10.259593
MA0042.10.0515872
MA0043.10.188037
MA0046.10.138779
MA0048.13.26425e-14
MA0050.12.82468
MA0051.11.45171
MA0052.10.0312458
MA0055.10
MA0056.10
MA0057.13.60519e-12
MA0058.10.00118663
MA0059.16.35943e-05
MA0060.11.48733e-09
MA0061.11.03694e-08
MA0063.10
MA0066.10.0252006
MA0067.10.151952
MA0068.18.63033e-08
MA0069.11.26769
MA0070.10.0292907
MA0071.10.0935732
MA0072.10.115292
MA0073.10
MA0074.10.00393645
MA0076.11.61613e-05
MA0077.10.101277
MA0078.10.0456794
MA0081.11.10041e-05
MA0083.10.0500776
MA0084.10.365435
MA0087.10.15167
MA0088.17.0109e-12
MA0089.10
MA0090.10.0014177
MA0091.10.000803096
MA0092.10.00142818
MA0093.10.00636019
MA0095.10
MA0098.10
MA0100.10.00325426
MA0101.16.9641e-06
MA0103.11.18051e-05
MA0105.18.80771e-09
MA0106.10.00236242
MA0107.16.44235e-07
MA0108.20.00660706
MA0109.10
MA0111.13.57257e-05
MA0113.10.00157613
MA0114.11.68215e-07
MA0115.10.0511153
MA0116.11.55552e-07
MA0117.10.0422545
MA0119.10.179277
MA0122.10.047582
MA0124.10.12515
MA0125.10.0922413
MA0130.10
MA0131.10.00485349
MA0132.10
MA0133.10
MA0135.10.0614569
MA0136.10.000721419
MA0139.13.20127e-09
MA0140.10.000405899
MA0141.10.000164216
MA0142.10.0541913
MA0143.10.00200122
MA0144.11.08446e-08
MA0145.11.59114e-15
MA0146.10
MA0147.12.22185e-08
MA0148.10.0713069
MA0149.18.34404e-06
MA0062.24.69184e-12
MA0035.20.591345
MA0039.20
MA0138.20.00441821
MA0002.20.00798804
MA0137.22.20138e-05
MA0104.21.15514e-08
MA0047.20.0728085
MA0112.23.64839e-12
MA0065.23.87824e-12
MA0150.10.00218175
MA0151.10
MA0152.1114.907
MA0153.10.510727
MA0154.11.00573e-09
MA0155.11.70204e-14
MA0156.11.12906e-06
MA0157.10.955432
MA0158.10
MA0159.16.71089e-07
MA0160.10.00437163
MA0161.10
MA0162.10
MA0163.10
MA0164.10.000725959
MA0080.20.00123265
MA0018.20.000856501
MA0099.20.0040944
MA0079.20
MA0102.20.40571
MA0258.19.39812e-05
MA0259.17.59879
MA0442.10
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