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MCL coexpression mm9:252

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127286945..127286957,+p1@Rdh19
Mm9::chr10:127286959..127286970,+p3@Rdh19
Mm9::chr10:127286973..127286982,+p2@Rdh19
Mm9::chr10:75036237..75036246,+p20@Ggt1
Mm9::chr10:75036945..75036970,+p@chr10:75036945..75036970
+
Mm9::chr12:70892340..70892351,-p@chr12:70892340..70892351
-
Mm9::chr13:29449543..29449564,-p@chr13:29449543..29449564
-
Mm9::chr14:65994176..65994223,+p9@Zfp395
Mm9::chr14:77873677..77873682,+p@chr14:77873677..77873682
+
Mm9::chr15:6330615..6330624,+p@chr15:6330615..6330624
+
Mm9::chr16:36561687..36561700,-p3@Casr
Mm9::chr16:86806603..86806613,-p1@uc007ztx.1
Mm9::chr19:17554168..17554181,+p@chr19:17554168..17554181
+
Mm9::chr19:44825248..44825255,-p@chr19:44825248..44825255
-
Mm9::chr1:108438515..108438553,+p1@ENSMUST00000144260
p1@ENSMUST00000149909
p1@uc007cgx.1
Mm9::chr2:29107203..29107216,-p8@6530402F18Rik
Mm9::chr3:132400383..132400390,+p@chr3:132400383..132400390
+
Mm9::chr3:28715165..28715176,-p@chr3:28715165..28715176
-
Mm9::chr3:28715186..28715197,-p@chr3:28715186..28715197
-
Mm9::chr3:57936042..57936071,-p@chr3:57936042..57936071
-
Mm9::chr3:63243166..63243186,+p@chr3:63243166..63243186
+
Mm9::chr3:68310831..68310837,+p@chr3:68310831..68310837
+
Mm9::chr4:114361321..114361337,-p@chr4:114361321..114361337
-
Mm9::chr4:19664510..19664529,+p@chr4:19664510..19664529
+
Mm9::chr5:123795864..123795869,-p@chr5:123795864..123795869
-
Mm9::chr6:117811962..117811990,+p5@Zfp239
Mm9::chr6:92766630..92766649,-p@chr6:92766630..92766649
-
Mm9::chr7:148280772..148280783,-p@chr7:148280772..148280783
-
Mm9::chr8:24425161..24425163,+p@chr8:24425161..24425163
+
Mm9::chr9:67114707..67114717,-p@chr9:67114707..67114717
-
Mm9::chr9:67114726..67114737,-p@chr9:67114726..67114737
-
Mm9::chr9:70616610..70616624,+p@chr9:70616610..70616624
+
Mm9::chr9:76894068..76894073,-p7@Tinag


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0045079negative regulation of chemokine biosynthetic process0.0243214367362558
GO:0004662CAAX-protein geranylgeranyltransferase activity0.0243214367362558
GO:0001960negative regulation of cytokine and chemokine mediated signaling pathway0.0243214367362558
GO:0001959regulation of cytokine and chemokine mediated signaling pathway0.0273578686066375
GO:0004661protein geranylgeranyltransferase activity0.0319000303945271
GO:0050755chemokine metabolic process0.0319000303945271
GO:0045073regulation of chemokine biosynthetic process0.0319000303945271
GO:0042033chemokine biosynthetic process0.0319000303945271
GO:0032602chemokine production0.032401941583357
GO:0042036negative regulation of cytokine biosynthetic process0.0364421998452786
GO:0008318protein prenyltransferase activity0.0397442381751995



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
kidney4.41e-3114
kidney mesenchyme4.41e-3114
upper urinary tract4.41e-3114
kidney rudiment4.41e-3114
kidney field4.41e-3114
urinary system structure4.68e-2418
renal system9.26e-2319
cavitated compound organ1.55e-2021
compound organ1.11e-0943
abdomen element2.10e-0849
abdominal segment element2.10e-0849
abdominal segment of trunk2.10e-0849
abdomen2.10e-0849


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000177087
MA0004.10.249193
MA0006.10.0844843
MA0007.10.0650029
MA0009.10.34692
MA0014.10.0098354
MA0017.10.77426
MA0019.11.15008
MA0024.10.312998
MA0025.10.541743
MA0027.11.90418
MA0028.10.0210023
MA0029.10.803957
MA0030.10.815132
MA0031.11.38273
MA0038.10.143615
MA0040.10.938724
MA0041.10.0430851
MA0042.10.351952
MA0043.10.425142
MA0046.12.61696
MA0048.10.334404
MA0050.10.0882677
MA0051.10.148819
MA0052.10.363203
MA0055.10.055379
MA0056.10
MA0057.10.0431157
MA0058.10.146267
MA0059.10.362368
MA0060.10.00690119
MA0061.10.0520289
MA0063.10
MA0066.10.425908
MA0067.10.640638
MA0068.10.0466506
MA0069.10.363473
MA0070.10.93645
MA0071.10.295941
MA0072.10.349077
MA0073.15.65916e-13
MA0074.10.375328
MA0076.10.0292731
MA0077.10.332127
MA0078.10.168681
MA0081.10.181635
MA0083.10.424485
MA0084.10.946331
MA0087.10.389127
MA0088.10.0407378
MA0089.10
MA0090.10.799032
MA0091.10.560893
MA0092.10.460613
MA0093.10.243545
MA0095.10
MA0098.10
MA0100.10.111578
MA0101.10.0435009
MA0103.10.274774
MA0105.10.0984007
MA0106.10.173498
MA0107.10.108731
MA0108.20.648082
MA0109.10
MA0111.11.27672
MA0113.10.473458
MA0114.11.05647
MA0115.10.427465
MA0116.10.0188282
MA0117.10.400878
MA0119.11.48754
MA0122.10.417182
MA0124.10.59287
MA0125.10.527588
MA0130.10
MA0131.10.210184
MA0132.10
MA0133.10
MA0135.10.4556
MA0136.10.128392
MA0139.10.0240589
MA0140.10.111518
MA0141.10.032292
MA0142.10.264434
MA0143.10.49793
MA0144.11.43755
MA0145.10.413053
MA0146.10.00859639
MA0147.10.0596042
MA0148.10.567677
MA0149.10.0453
MA0062.20.0130026
MA0035.20.113965
MA0039.23.10213e-06
MA0138.22.47731
MA0002.20.502063
MA0137.20.557496
MA0104.20.00554694
MA0047.20.86636
MA0112.20.0499413
MA0065.20.415311
MA0150.10.49998
MA0151.10
MA0152.10.440841
MA0153.13.05444
MA0154.10.681937
MA0155.10.0679314
MA0156.10.53122
MA0157.10.677848
MA0158.10
MA0159.10.173472
MA0160.10.0794009
MA0161.10
MA0162.11.50107e-06
MA0163.19.07079e-05
MA0164.10.403627
MA0080.20.795599
MA0018.20.133983
MA0099.21.10126
MA0079.22.68932e-10
MA0102.20.996522
MA0258.10.254714
MA0259.10.0533374
MA0442.10