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MCL coexpression mm9:93

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:53470899..53470970,-p2@Fam184a
Mm9::chr10:76412056..76412061,-p@chr10:76412056..76412061
-
Mm9::chr11:101943778..101943807,-p3@Mpp2
Mm9::chr11:107776320..107776353,-p1@Cacng5
Mm9::chr11:107776355..107776383,-p2@Cacng5
Mm9::chr11:3405465..3405474,-p@chr11:3405465..3405474
-
Mm9::chr11:76322710..76322730,-p30@Abr
Mm9::chr11:76322733..76322742,-p41@Abr
Mm9::chr11:87172588..87172595,-p3@Ppm1e
Mm9::chr11:99278455..99278466,+p2@ENSMUST00000139095
p2@uc007lit.1
Mm9::chr12:30219581..30219590,+p17@Myt1l
Mm9::chr12:83440683..83440690,+p@chr12:83440683..83440690
+
Mm9::chr12:83440694..83440703,+p@chr12:83440694..83440703
+
Mm9::chr12:83440711..83440737,+p@chr12:83440711..83440737
+
Mm9::chr12:83440747..83440763,+p@chr12:83440747..83440763
+
Mm9::chr12:83440768..83440777,+p@chr12:83440768..83440777
+
Mm9::chr13:110717040..110717089,+p12@Pde4d
Mm9::chr13:110717095..110717121,+p17@Pde4d
Mm9::chr13:13876545..13876632,+p1@Gng4
Mm9::chr13:13876637..13876681,+p2@Gng4
Mm9::chr13:13917717..13917730,+p@chr13:13917717..13917730
+
Mm9::chr13:25361035..25361082,-p@chr13:25361035..25361082
-
Mm9::chr13:25361767..25361776,-p4@Nrsn1
Mm9::chr13:25361782..25361783,-p5@Nrsn1
Mm9::chr13:43012161..43012180,+p@chr13:43012161..43012180
+
Mm9::chr13:8300741..8300746,+p@chr13:8300741..8300746
+
Mm9::chr14:14286451..14286466,+p8@Synpr
Mm9::chr14:14286485..14286519,+p6@Synpr
Mm9::chr14:14286524..14286637,+p2@Synpr
Mm9::chr14:31166654..31166721,-p1@Cacna1d
Mm9::chr14:34030224..34030232,+p@chr14:34030224..34030232
+
Mm9::chr14:37911534..37911549,-p2@Cdhr1
Mm9::chr14:73766226..73766238,-p@chr14:73766226..73766238
-
Mm9::chr15:102196702..102196713,-p6@Sp7
Mm9::chr15:41278369..41278381,+p@chr15:41278369..41278381
+
Mm9::chr15:41280074..41280084,-p@chr15:41280074..41280084
-
Mm9::chr15:83278346..83278372,-p@chr15:83278346..83278372
-
Mm9::chr15:83278413..83278422,-p@chr15:83278413..83278422
-
Mm9::chr15:89672324..89672354,-p1@Syt10
Mm9::chr15:89672355..89672366,-p2@Syt10
Mm9::chr16:28274394..28274399,-p@chr16:28274394..28274399
-
Mm9::chr16:28307257..28307261,-p@chr16:28307257..28307261
-
Mm9::chr16:28422545..28422548,-p@chr16:28422545..28422548
-
Mm9::chr16:28445450..28445481,-p2@Fgf12
Mm9::chr16:28445769..28445780,-p5@Fgf12
Mm9::chr16:28445935..28445953,-p@chr16:28445935..28445953
-
Mm9::chr16:28446864..28446920,-p@chr16:28446864..28446920
-
Mm9::chr16:28447073..28447096,-p@chr16:28447073..28447096
-
Mm9::chr16:28447103..28447119,-p@chr16:28447103..28447119
-
Mm9::chr16:28564950..28564972,-p3@Fgf12
Mm9::chr16:65105497..65105505,-p3@Htr1f
Mm9::chr16:65105539..65105553,-p1@Htr1f
Mm9::chr16:89897554..89897580,-p@chr16:89897554..89897580
-
Mm9::chr17:27089806..27089823,+p@chr17:27089806..27089823
+
Mm9::chr17:70318446..70318465,+p4@Dlgap1
Mm9::chr17:71043799..71043803,+p@chr17:71043799..71043803
+
Mm9::chr18:62071534..62071542,-p4@Ablim3
Mm9::chr18:84256138..84256150,-p7@Tshz1
Mm9::chr19:11067666..11067676,-p1@Ms4a15
Mm9::chr19:17211298..17211309,+p7@Prune2
Mm9::chr1:125750531..125750534,-p@chr1:125750531..125750534
-
Mm9::chr1:136763132..136763143,-p@chr1:136763132..136763143
-
Mm9::chr1:136763144..136763154,-p@chr1:136763144..136763154
-
Mm9::chr1:15276981..15277044,+p@chr1:15276981..15277044
+
Mm9::chr1:15277083..15277098,+p@chr1:15277083..15277098
+
Mm9::chr1:168186724..168186732,+p@chr1:168186724..168186732
+
Mm9::chr2:110631386..110631389,-p@chr2:110631386..110631389
-
Mm9::chr2:110790316..110790326,-p3@Ano3
Mm9::chr2:110790350..110790363,-p2@Ano3
Mm9::chr2:115884524..115884535,-p27@Meis2
Mm9::chr2:26197802..26197815,+p5@Gpsm1
Mm9::chr2:26997926..26997945,-p2@Fam163b
Mm9::chr2:33650265..33650274,+p@chr2:33650265..33650274
+
Mm9::chr2:61985828..61985843,+p7@Slc4a10
Mm9::chr2:61985859..61985883,+p6@Slc4a10
Mm9::chr2:61985885..61985930,+p4@Slc4a10
Mm9::chr2:70400043..70400060,+p8@Gad1
Mm9::chr2:70400064..70400094,+p2@Gad1
Mm9::chr2:77357593..77357606,-p6@Zfp385b
Mm9::chr2:77541309..77541322,-p14@Zfp385b
Mm9::chr2:77541362..77541382,-p8@Zfp385b
Mm9::chr2:77541432..77541474,-p5@Zfp385b
Mm9::chr2:83564315..83564326,+p4@Itgav
Mm9::chr2:83688910..83688922,+p@chr2:83688910..83688922
+
Mm9::chr2:83691226..83691229,+p@chr2:83691226..83691229
+
Mm9::chr2:85038895..85038937,-p@chr2:85038895..85038937
-
Mm9::chr3:117278146..117278157,+p14@4833424O15Rik
Mm9::chr3:157945169..157945173,-p@chr3:157945169..157945173
-
Mm9::chr3:34003359..34003369,+p2@ENSMUST00000172725
Mm9::chr3:53292599..53292636,+p1@Stoml3
Mm9::chr3:90412419..90412423,+p1@S100a5
Mm9::chr4:101180082..101180100,+p30@Dnajc6
Mm9::chr4:104062484..104062487,+p@chr4:104062484..104062487
+
Mm9::chr4:140513761..140513773,-p4@ENSMUST00000140501
p4@uc008vnk.1
Mm9::chr4:152858080..152858084,-p@chr4:152858080..152858084
-
Mm9::chr4:154417252..154417281,-p2@Plch2
Mm9::chr4:69056477..69056523,-p@chr4:69056477..69056523
-
Mm9::chr4:77100013..77100024,-p@chr4:77100013..77100024
-
Mm9::chr4:77100080..77100088,-p@chr4:77100080..77100088
-
Mm9::chr4:81274174..81274179,+p@chr4:81274174..81274179
+
Mm9::chr5:122618134..122618145,+p4@Ppp1cc
Mm9::chr5:27143949..27143968,+p23@Dpp6
Mm9::chr5:35332185..35332194,+p20@Rgs12
Mm9::chr5:35332279..35332324,+p5@Rgs12
Mm9::chr5:52188460..52188465,-p@chr5:52188460..52188465
-
Mm9::chr5:52263340..52263343,-p@chr5:52263340..52263343
-
Mm9::chr5:52406720..52406724,-p@chr5:52406720..52406724
-
Mm9::chr6:119058565..119058634,-p1@Cacna1c
Mm9::chr6:133331069..133331076,-p@chr6:133331069..133331076
-
Mm9::chr6:29820263..29820270,+p17@Ahcyl2
Mm9::chr6:29820295..29820300,+p20@Ahcyl2
Mm9::chr6:9046389..9046395,+p@chr6:9046389..9046395
+
Mm9::chr6:91757384..91757405,-p3@Grip2
Mm9::chr6:92194639..92194643,-p1@Trh
Mm9::chr7:105293982..105293989,-p1@Omp
Mm9::chr7:107801910..107801915,-p@chr7:107801910..107801915
-
Mm9::chr7:142300433..142300446,+p@chr7:142300433..142300446
+
Mm9::chr7:52434909..52434937,-p1@NM_001195255
p1@uc012fkd.1
Mm9::chr7:62387379..62387382,+p@chr7:62387379..62387382
+
Mm9::chr7:85768209..85768229,-p@chr7:85768209..85768229
-
Mm9::chr7:98036106..98036117,+p@chr7:98036106..98036117
+
Mm9::chr8:10249189..10249200,+p@chr8:10249189..10249200
+
Mm9::chr8:14381943..14382003,+p1@Dlgap2
Mm9::chr8:61390628..61390645,-p2@Galntl6
Mm9::chr9:101764773..101764795,-p2@uc009rfm.1
Mm9::chr9:104471963..104471995,+p2@Cpne4
Mm9::chr9:104472002..104472013,+p5@Cpne4
Mm9::chr9:104472065..104472076,+p6@Cpne4
Mm9::chr9:104472084..104472123,+p1@Cpne4
Mm9::chr9:104472125..104472130,+p8@Cpne4
Mm9::chr9:77099873..77099883,-p@chr9:77099873..77099883
-
Mm9::chrX:48295916..48295935,-p1@Frmd7
Mm9::chrX:48295939..48295950,-p2@Frmd7
Mm9::chrX:48295979..48295986,-p4@Frmd7
Mm9::chrX:48296780..48296799,-p@chrX:48296780..48296799
-
Mm9::chrX:84514191..84514194,-p@chrX:84514191..84514194
-
Mm9::chrX:96239342..96239355,+p6@Stard8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030695GTPase regulator activity0.000949497630694768
GO:0005096GTPase activator activity0.00311962469377568
GO:0008047enzyme activator activity0.00837243590756546
GO:0042578phosphoric ester hydrolase activity0.0313119780733749



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)4.59e-0723
neuroblast (sensu Vertebrata)4.59e-0723

Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.95e-2454
neurectoderm7.60e-2464
neural plate7.60e-2464
presumptive neural plate7.60e-2464
gray matter8.75e-2434
neural tube1.36e-2352
neural rod1.36e-2352
future spinal cord1.36e-2352
neural keel1.36e-2352
ecto-epithelium1.66e-1973
brain9.71e-1947
future brain9.71e-1947
brain grey matter2.27e-1829
regional part of telencephalon2.27e-1829
telencephalon2.27e-1829
pre-chordal neural plate4.51e-1849
central nervous system7.50e-1873
regional part of brain1.65e-1746
nervous system4.36e-1775
anterior neural tube3.19e-1640
occipital lobe7.92e-1610
visual cortex7.92e-1610
neocortex7.92e-1610
ectoderm-derived structure8.61e-1695
ectoderm8.61e-1695
presumptive ectoderm8.61e-1695
regional part of forebrain3.81e-1539
forebrain3.81e-1539
future forebrain3.81e-1539
regional part of cerebral cortex1.93e-1317
structure with developmental contribution from neural crest3.35e-1392
cerebral cortex4.34e-1221
cerebral hemisphere4.34e-1221
pallium4.34e-1221
posterior neural tube3.94e-0812
chordal neural plate3.94e-0812
spinal cord4.40e-086
dorsal region element4.40e-086
dorsum4.40e-086
basal ganglion1.21e-078
nuclear complex of neuraxis1.21e-078
aggregate regional part of brain1.21e-078
collection of basal ganglia1.21e-078
cerebral subcortex1.21e-078
regional part of spinal cord6.79e-075
gray matter of spinal cord6.79e-075


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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