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MCL coexpression mm9:682

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Phase1 CAGE Peaks

 Short description
Mm9::chr3:92189605..92189609,+p1@Sprr2h
Mm9::chr7:29328946..29328963,+p@chr7:29328946..29328963
+
Mm9::chr7:29329001..29329020,-p@chr7:29329001..29329020
-
Mm9::chr7:29329001..29329032,+p@chr7:29329001..29329032
+
Mm9::chr7:29329057..29329081,-p@chr7:29329057..29329081
-
Mm9::chr7:29329148..29329160,-p@chr7:29329148..29329160
-
Mm9::chr7:29329247..29329259,-p@chr7:29329247..29329259
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Mm9::chr7:29329460..29329471,-p@chr7:29329460..29329471
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Mm9::chr7:29332062..29332106,-p@chr7:29332062..29332106
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Mm9::chr7:29332128..29332139,-p@chr7:29332128..29332139
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Mm9::chr7:31561413..31561429,+p2@Dmkn


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0001533cornified envelope0.0243606575800651
GO:0007566embryo implantation0.0243606575800651
GO:0030216keratinocyte differentiation0.0243606575800651
GO:0031424keratinization0.0243606575800651
GO:0009913epidermal cell differentiation0.0243606575800651
GO:0042698menstrual cycle0.0243606575800651
GO:0007565female pregnancy0.0243606575800651
GO:0048730epidermis morphogenesis0.025469123031589
GO:0032504multicellular organism reproduction0.0283313084370023
GO:0048609reproductive process in a multicellular organism0.0283313084370023
GO:0048729tissue morphogenesis0.0283313084370023
GO:0008544epidermis development0.0322601223294536
GO:0007398ectoderm development0.0322601223294536



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
zone of skin1.10e-085
skin epidermis1.10e-085
skin of body1.10e-085
integument1.10e-085
surface1.10e-085
outer epithelium1.10e-085
integumental system1.10e-085
enveloping layer of ectoderm1.10e-085
internal female genitalia3.56e-085


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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