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MCL coexpression mm9:392

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:61573809..61573820,-p3@2010107G23Rik
Mm9::chr11:24058300..24058311,+p@chr11:24058300..24058311
+
Mm9::chr11:70846402..70846415,-p@chr11:70846402..70846415
-
Mm9::chr11:78311195..78311232,-p2@Sarm1
Mm9::chr12:28019641..28019644,-p@chr12:28019641..28019644
-
Mm9::chr14:65207115..65207126,+p@chr14:65207115..65207126
+
Mm9::chr14:65207173..65207198,+p@chr14:65207173..65207198
+
Mm9::chr14:65209241..65209263,+p1@Mir124a-1
Mm9::chr17:56615930..56615940,-p6@Ptprs
Mm9::chr18:25913004..25913008,+p@chr18:25913004..25913008
+
Mm9::chr18:65742044..65742053,+p11@Zfp532
Mm9::chr1:170361398..170361400,-p@chr1:170361398..170361400
-
Mm9::chr2:158436393..158436401,-p2@ENSMUST00000145773
Mm9::chr2:180627636..180627644,-p@chr2:180627636..180627644
-
Mm9::chr4:45824178..45824182,-p@chr4:45824178..45824182
-
Mm9::chr8:125944765..125944779,+p@chr8:125944765..125944779
+
Mm9::chr9:21850877..21850881,-p@chr9:21850877..21850881
-
Mm9::chr9:41388869..41388891,-p@chr9:41388869..41388891
-
Mm9::chrX:45872717..45872735,+p4@Rab33a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0031315extrinsic to mitochondrial outer membrane0.0281871473182491
GO:0031312extrinsic to organelle membrane0.0281871473182491
GO:0009746response to hexose stimulus0.0450772013900306
GO:0009749response to glucose stimulus0.0450772013900306
GO:0009743response to carbohydrate stimulus0.0450772013900306



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
gray matter4.83e-3234
neurectoderm5.42e-3064
neural plate5.42e-3064
presumptive neural plate5.42e-3064
regional part of nervous system8.32e-3054
central nervous system2.80e-2973
neural tube3.80e-2952
neural rod3.80e-2952
future spinal cord3.80e-2952
neural keel3.80e-2952
nervous system4.12e-2875
brain grey matter7.81e-2629
regional part of telencephalon7.81e-2629
telencephalon7.81e-2629
ectoderm-derived structure7.57e-2595
ectoderm7.57e-2595
presumptive ectoderm7.57e-2595
ecto-epithelium1.34e-2473
brain9.52e-2447
future brain9.52e-2447
pre-chordal neural plate1.21e-2349
regional part of brain1.15e-2246
anterior neural tube1.47e-2240
regional part of forebrain8.93e-2239
forebrain8.93e-2239
future forebrain8.93e-2239
cerebral cortex5.38e-2121
cerebral hemisphere5.38e-2121
pallium5.38e-2121
structure with developmental contribution from neural crest9.40e-1792
regional part of cerebral cortex4.91e-1617
occipital lobe1.20e-1210
visual cortex1.20e-1210
neocortex1.20e-1210
spinal cord6.35e-086
dorsal region element6.35e-086
dorsum6.35e-086
regional part of spinal cord2.36e-075
gray matter of spinal cord2.36e-075
tube4.04e-07114
posterior neural tube5.09e-0712
chordal neural plate5.09e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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