MCL coexpression mm9:304
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0007389 | pattern specification process | 0.00827033798700138 |
| GO:0005667 | transcription factor complex | 0.0143546493148905 |
| GO:0043565 | sequence-specific DNA binding | 0.0143546493148905 |
| GO:0009887 | organ morphogenesis | 0.0143546493148905 |
| GO:0044451 | nucleoplasm part | 0.0143546493148905 |
| GO:0019911 | structural constituent of myelin sheath | 0.0143546493148905 |
| GO:0005654 | nucleoplasm | 0.0143546493148905 |
| GO:0031981 | nuclear lumen | 0.0195844888714347 |
| GO:0048731 | system development | 0.0195844888714347 |
| GO:0043209 | myelin sheath | 0.0195844888714347 |
| GO:0031974 | membrane-enclosed lumen | 0.0195844888714347 |
| GO:0043233 | organelle lumen | 0.0195844888714347 |
| GO:0003700 | transcription factor activity | 0.023674088094386 |
| GO:0003677 | DNA binding | 0.02392543120091 |
| GO:0048856 | anatomical structure development | 0.0250669350689919 |
| GO:0005391 | sodium:potassium-exchanging ATPase activity | 0.0282412137328525 |
| GO:0044428 | nuclear part | 0.0312030793391585 |
| GO:0007275 | multicellular organismal development | 0.0317422487954817 |
| GO:0009653 | anatomical structure morphogenesis | 0.0387280015869857 |
| GO:0005634 | nucleus | 0.0387280015869857 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| raphe nuclei neuron | 5.01e-10 | 3 |
| neuron of the ventral spinal cord | 7.57e-10 | 3 |
| CNS neuron (sensu Vertebrata) | 2.51e-07 | 23 |
| neuroblast (sensu Vertebrata) | 2.51e-07 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| posterior neural tube | 2.07e-20 | 12 |
| chordal neural plate | 2.07e-20 | 12 |
| spinal cord | 1.62e-18 | 6 |
| dorsal region element | 1.62e-18 | 6 |
| dorsum | 1.62e-18 | 6 |
| regional part of nervous system | 4.61e-14 | 54 |
| regional part of spinal cord | 1.06e-12 | 5 |
| gray matter of spinal cord | 1.06e-12 | 5 |
| central nervous system | 2.90e-12 | 73 |
| neural tube | 4.42e-12 | 52 |
| neural rod | 4.42e-12 | 52 |
| future spinal cord | 4.42e-12 | 52 |
| neural keel | 4.42e-12 | 52 |
| nervous system | 6.62e-12 | 75 |
| ectoderm-derived structure | 5.96e-11 | 95 |
| ectoderm | 5.96e-11 | 95 |
| presumptive ectoderm | 5.96e-11 | 95 |
| ecto-epithelium | 3.33e-10 | 73 |
| raphe nuclei | 5.01e-10 | 3 |
| reticular formation | 5.01e-10 | 3 |
| ventral horn of spinal cord | 7.57e-10 | 3 |
| neurectoderm | 1.27e-09 | 64 |
| neural plate | 1.27e-09 | 64 |
| presumptive neural plate | 1.27e-09 | 64 |
| adult organism | 6.85e-08 | 51 |
| corpora quadrigemina | 8.96e-08 | 1 |
| midbrain tectum | 8.96e-08 | 1 |
| neural tube mantle layer | 8.96e-08 | 1 |
| tectal plate | 8.96e-08 | 1 |
| neural tube alar plate | 8.96e-08 | 1 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
