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MCL coexpression mm9:2872

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Phase1 CAGE Peaks

 Short description
Mm9::chr13:74908030..74908043,-p5@Cast
Mm9::chr13:74908046..74908066,-p4@Cast
Mm9::chr13:74908074..74908117,-p3@Cast


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
epithelial tube9.83e-1247
foregut1.94e-1180
endoderm-derived structure1.29e-09118
endoderm1.29e-09118
presumptive endoderm1.29e-09118
subdivision of digestive tract1.88e-09114
digestive system1.97e-09116
digestive tract1.97e-09116
primitive gut1.97e-09116
liver2.21e-0822
epithelial sac2.21e-0822
digestive gland2.21e-0822
epithelium of foregut-midgut junction2.21e-0822
anatomical boundary2.21e-0822
hepatobiliary system2.21e-0822
foregut-midgut junction2.21e-0822
hepatic diverticulum2.21e-0822
liver primordium2.21e-0822
septum transversum2.21e-0822
liver bud2.21e-0822
digestive tract diverticulum2.79e-0723
sac2.79e-0723
exocrine gland3.26e-0725
exocrine system3.26e-0725
primordium4.39e-07134
subdivision of trunk4.39e-0766
trunk mesenchyme6.19e-0745
splanchnic layer of lateral plate mesoderm9.80e-0733


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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