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MCL coexpression mm9:1326

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:55757483..55757504,-p1@1110002B05Rik
Mm9::chr5:104450798..104450815,-p2@Hsd17b11
Mm9::chr5:104450818..104450884,-p1@Hsd17b11
Mm9::chr5:8996618..8996632,-p2@Crot
Mm9::chr5:8996642..8996647,-p9@Crot
Mm9::chr5:8996655..8996667,-p5@Crot


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0008458carnitine O-octanoyltransferase activity0.0025749191913658
GO:0016415octanoyltransferase activity0.0025749191913658
GO:0016414O-octanoyltransferase activity0.0025749191913658
GO:0015908fatty acid transport0.00926716990639254
GO:0016406carnitine O-acyltransferase activity0.00926716990639254
GO:0004303estradiol 17-beta-dehydrogenase activity0.0102957270702699
GO:0044255cellular lipid metabolic process0.0151652090407481
GO:0006629lipid metabolic process0.0175099004677222
GO:0016229steroid dehydrogenase activity0.0180046905529867
GO:0008374O-acyltransferase activity0.0231374707154451
GO:0006694steroid biosynthetic process0.0474457324366066
GO:0006869lipid transport0.0474457324366066
GO:0042579microbody0.0483245373075855
GO:0005777peroxisome0.0483245373075855



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
epithelial cell6.09e-0825

Uber Anatomy
Ontology termp-valuen
intestine1.27e-1531
gastrointestinal system1.85e-1347
endoderm-derived structure2.17e-13118
endoderm2.17e-13118
presumptive endoderm2.17e-13118
digestive system8.63e-13116
digestive tract8.63e-13116
primitive gut8.63e-13116
subdivision of digestive tract6.77e-12114
mucosa1.82e-0915
intestinal mucosa2.01e-0813
anatomical wall2.01e-0813
wall of intestine2.01e-0813
gastrointestinal system mucosa2.01e-0813
trunk mesenchyme6.03e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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