CL:0000351
From FANTOM5_SSTAR
| Name: | trophoblast cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface." [GOC:tfm, MESH:A.11.936] | ||
| Xrefs: |
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| Synonyms: | "trophoblastic cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000349(extraembryonic cell) |
|---|
Children
| is a: | FF:0000190 (trophoblast) |
|---|---|
| derives from: | FF:0000626 (trophoblast cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11534-120A4
- 11614-122A3
- 11695-123A3
- 13283-142F7 (trophoblast stem cell line R1AB differentiation)
- 13284-142F8 (trophoblast stem cell line R1AB differentiation)
- 13285-142F9 (trophoblast stem cell line R1AB differentiation)
- 13286-142G1 (trophoblast stem cell line R1AB differentiation)
- 13287-142G2 (trophoblast stem cell line R1AB differentiation)
- 13288-142G3 (trophoblast stem cell line R1AB differentiation)
- 13289-142G4 (trophoblast stem cell line R1AB differentiation)
... further results Mouse (Mus musculus)
- 11534-120A4
- 11614-122A3
- 11695-123A3
- 13283-142F7 (trophoblast stem cell line R1AB differentiation)
- 13284-142F8 (trophoblast stem cell line R1AB differentiation)
- 13285-142F9 (trophoblast stem cell line R1AB differentiation)
- 13286-142G1 (trophoblast stem cell line R1AB differentiation)
- 13287-142G2 (trophoblast stem cell line R1AB differentiation)
- 13288-142G3 (trophoblast stem cell line R1AB differentiation)
- 13289-142G4 (trophoblast stem cell line R1AB differentiation)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000351 (trophoblast cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_77265b5f9674245ee15a391309ef24bc | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_77265b5f9674245ee15a391309ef24bc | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_77265b5f9674245ee15a391309ef24bc | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_77265b5f9674245ee15a391309ef24bc | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_77265b5f9674245ee15a391309ef24bc | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_77265b5f9674245ee15a391309ef24bc | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_77265b5f9674245ee15a391309ef24bc | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_77265b5f9674245ee15a391309ef24bc | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_77265b5f9674245ee15a391309ef24bc | p2@Lin28a |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_77265b5f9674245ee15a391309ef24bc | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_77265b5f9674245ee15a391309ef24bc | p2@Triml2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_77265b5f9674245ee15a391309ef24bc | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_77265b5f9674245ee15a391309ef24bc | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_77265b5f9674245ee15a391309ef24bc | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_77265b5f9674245ee15a391309ef24bc | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_77265b5f9674245ee15a391309ef24bc | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_77265b5f9674245ee15a391309ef24bc | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_77265b5f9674245ee15a391309ef24bc | p1@Rhox6 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_77265b5f9674245ee15a391309ef24bc | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_77265b5f9674245ee15a391309ef24bc | p2@Triml2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_77265b5f9674245ee15a391309ef24bc | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_77265b5f9674245ee15a391309ef24bc | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_77265b5f9674245ee15a391309ef24bc | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_77265b5f9674245ee15a391309ef24bc | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_77265b5f9674245ee15a391309ef24bc | p@chr9:59378043..59378047, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_77265b5f9674245ee15a391309ef24bc | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_77265b5f9674245ee15a391309ef24bc | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_77265b5f9674245ee15a391309ef24bc | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_77265b5f9674245ee15a391309ef24bc | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_77265b5f9674245ee15a391309ef24bc | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_77265b5f9674245ee15a391309ef24bc | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_77265b5f9674245ee15a391309ef24bc | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_77265b5f9674245ee15a391309ef24bc | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_77265b5f9674245ee15a391309ef24bc | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_77265b5f9674245ee15a391309ef24bc | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_77265b5f9674245ee15a391309ef24bc | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_77265b5f9674245ee15a391309ef24bc | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_77265b5f9674245ee15a391309ef24bc | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_77265b5f9674245ee15a391309ef24bc | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_77265b5f9674245ee15a391309ef24bc | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_77265b5f9674245ee15a391309ef24bc | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_77265b5f9674245ee15a391309ef24bc | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_77265b5f9674245ee15a391309ef24bc | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_77265b5f9674245ee15a391309ef24bc | p@chr12:87810964..87810976, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_77265b5f9674245ee15a391309ef24bc | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_77265b5f9674245ee15a391309ef24bc | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_77265b5f9674245ee15a391309ef24bc | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_77265b5f9674245ee15a391309ef24bc | p1@Rhox6 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_77265b5f9674245ee15a391309ef24bc | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_77265b5f9674245ee15a391309ef24bc | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_77265b5f9674245ee15a391309ef24bc | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_77265b5f9674245ee15a391309ef24bc | p@chr12:87810964..87810976, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_77265b5f9674245ee15a391309ef24bc | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_77265b5f9674245ee15a391309ef24bc | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_77265b5f9674245ee15a391309ef24bc | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_77265b5f9674245ee15a391309ef24bc | p2@Lin28a |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_77265b5f9674245ee15a391309ef24bc | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_77265b5f9674245ee15a391309ef24bc | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_77265b5f9674245ee15a391309ef24bc | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_77265b5f9674245ee15a391309ef24bc | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_77265b5f9674245ee15a391309ef24bc | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_77265b5f9674245ee15a391309ef24bc | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_77265b5f9674245ee15a391309ef24bc | p@chr9:59378043..59378047, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:55557416..55557422,+#_6000ac89ae446baed5c214b5623ea858 | p13@Cmtm5 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr1:174143273..174143293,-#_6000ac89ae446baed5c214b5623ea858 | p@chr1:174143273..174143293, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:109128151..109128162,+#_6000ac89ae446baed5c214b5623ea858 | p5@Cdh1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr1:174143273..174143293,-#_6000ac89ae446baed5c214b5623ea858 | p@chr1:174143273..174143293, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr9:114472360..114472371,-#_6000ac89ae446baed5c214b5623ea858 | p@chr9:114472360..114472371, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:66542571..66542582,-#_6000ac89ae446baed5c214b5623ea858 | p13@Rbm47 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr9:118387933..118387942,+#_6000ac89ae446baed5c214b5623ea858 | p4@Eomes |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:44392404..44392412,-#_6000ac89ae446baed5c214b5623ea858 | p3@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr9:114472360..114472371,-#_6000ac89ae446baed5c214b5623ea858 | p@chr9:114472360..114472371, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:155572913..155572925,+#_6000ac89ae446baed5c214b5623ea858 | p@chr2:155572913..155572925, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr13:120218522..120218537,+#_6000ac89ae446baed5c214b5623ea858 | p@chr13:120218522..120218537, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:172371713..172371724,+#_6000ac89ae446baed5c214b5623ea858 | p@chr2:172371713..172371724, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr16:53576572..53576579,+#_6000ac89ae446baed5c214b5623ea858 | p@chr16:53576572..53576579, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr13:120218522..120218537,+#_6000ac89ae446baed5c214b5623ea858 | p@chr13:120218522..120218537, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:66542571..66542582,-#_6000ac89ae446baed5c214b5623ea858 | p13@Rbm47 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:155572913..155572925,+#_6000ac89ae446baed5c214b5623ea858 | p@chr2:155572913..155572925, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:44392404..44392412,-#_6000ac89ae446baed5c214b5623ea858 | p3@Zfp42 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr16:53576572..53576579,+#_6000ac89ae446baed5c214b5623ea858 | p@chr16:53576572..53576579, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:44392345..44392363,-#_6000ac89ae446baed5c214b5623ea858 | p1@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr9:118387933..118387942,+#_6000ac89ae446baed5c214b5623ea858 | p4@Eomes |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:172371713..172371724,+#_6000ac89ae446baed5c214b5623ea858 | p@chr2:172371713..172371724, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:30062362..30062371,+#_6000ac89ae446baed5c214b5623ea858 | p6@Dnajb6 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:55557416..55557422,+#_6000ac89ae446baed5c214b5623ea858 | p13@Cmtm5 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:30062362..30062371,+#_6000ac89ae446baed5c214b5623ea858 | p6@Dnajb6 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:109128151..109128162,+#_6000ac89ae446baed5c214b5623ea858 | p5@Cdh1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:44392345..44392363,-#_6000ac89ae446baed5c214b5623ea858 | p1@Zfp42 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr2:122084320..122084337,+#_d83bcbbb43dd347113af2bc6fb5c1dde | p@chr2:122084320..122084337, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chrX:132804817..132804822,+#_d83bcbbb43dd347113af2bc6fb5c1dde | p5@Ngfrap1 |
| 2.21e-65 | FFCP PHASE1:Mm9::chr14:55556576..55556586,+#_d83bcbbb43dd347113af2bc6fb5c1dde | p@chr14:55556576..55556586, + |
| 2.21e-65 | FFCP PHASE2:Mm9::chrX:132804817..132804822,+#_d83bcbbb43dd347113af2bc6fb5c1dde | p5@Ngfrap1 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr12:13000114..13000147,+#_d83bcbbb43dd347113af2bc6fb5c1dde | p@chr12:13000114..13000147, + |
| 2.21e-65 | FFCP PHASE2:Mm9::chr5:109984555..109984566,-#_d83bcbbb43dd347113af2bc6fb5c1dde | p@chr5:109984555..109984566, - |
