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MCL coexpression mm9:338

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127303468..127303473,+p6@BC089597
Mm9::chr12:85393097..85393107,+p2@Acot3
Mm9::chr13:23931446..23931456,+p4@Slc17a3
Mm9::chr13:23972751..23972753,+p@chr13:23972751..23972753
+
Mm9::chr14:49860853..49860856,-p@chr14:49860853..49860856
-
Mm9::chr15:27925075..27925093,-p@chr15:27925075..27925093
-
Mm9::chr18:35775051..35775061,-p@chr18:35775051..35775061
-
Mm9::chr19:12774597..12774607,+p@chr19:12774597..12774607
+
Mm9::chr19:40562058..40562081,-p@chr19:40562058..40562081
-
Mm9::chr2:162833196..162833199,+p@chr2:162833196..162833199
+
Mm9::chr2:163335366..163335380,-p@chr2:163335366..163335380
-
Mm9::chr2:167864910..167864915,-p@chr2:167864910..167864915
-
Mm9::chr3:121898002..121898005,-p@chr3:121898002..121898005
-
Mm9::chr4:128295560..128295571,-p@chr4:128295560..128295571
-
Mm9::chr4:137222270..137222274,-p@chr4:137222270..137222274
-
Mm9::chr5:89514525..89514545,+p@chr5:89514525..89514545
+
Mm9::chr5:89531075..89531084,+p@chr5:89531075..89531084
+
Mm9::chr5:89537758..89537769,+p@chr5:89537758..89537769
+
Mm9::chr7:126759226..126759230,-p@chr7:126759226..126759230
-
Mm9::chr7:31099193..31099204,-p@chr7:31099193..31099204
-
Mm9::chr8:62997035..62997039,+p@chr8:62997035..62997039
+
Mm9::chr8:63003002..63003009,+p@chr8:63003002..63003009
+
Mm9::chr9:71572350..71572363,-p@chr9:71572350..71572363
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0032788saturated monocarboxylic acid metabolic process0.0124900708008226
GO:0032789unsaturated monocarboxylic acid metabolic process0.0124900708008226
GO:0000038very-long-chain fatty acid metabolic process0.0249514138627973
GO:0016290palmitoyl-CoA hydrolase activity0.0249514138627973
GO:0006637acyl-CoA metabolic process0.0249514138627973
GO:0016291acyl-CoA thioesterase activity0.0249514138627973
GO:0001676long-chain fatty acid metabolic process0.0249514138627973
GO:0016289CoA hydrolase activity0.0249514138627973



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
kidney3.57e-2014
kidney mesenchyme3.57e-2014
upper urinary tract3.57e-2014
kidney rudiment3.57e-2014
kidney field3.57e-2014
abdomen element1.23e-1849
abdominal segment element1.23e-1849
abdominal segment of trunk1.23e-1849
abdomen1.23e-1849
urinary system structure1.82e-1518
renal system1.34e-1419
mesenchyme1.71e-1461
entire embryonic mesenchyme1.71e-1461
subdivision of trunk3.30e-1366
cavitated compound organ4.14e-1321
trunk region element1.26e-1079
liver2.48e-0922
epithelial sac2.48e-0922
digestive gland2.48e-0922
epithelium of foregut-midgut junction2.48e-0922
anatomical boundary2.48e-0922
hepatobiliary system2.48e-0922
foregut-midgut junction2.48e-0922
hepatic diverticulum2.48e-0922
liver primordium2.48e-0922
septum transversum2.48e-0922
liver bud2.48e-0922
trunk5.12e-0990
digestive tract diverticulum6.82e-0923
sac6.82e-0923
exocrine gland4.05e-0825
exocrine system4.05e-0825


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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