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Coexpression cluster:C354

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Full id: C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth



Phase1 CAGE Peaks

Hg19::chr2:224840275..224840339,-p6@SERPINE2
Hg19::chr2:224840385..224840416,-p13@SERPINE2
Hg19::chr2:224840525..224840564,-p12@SERPINE2
Hg19::chr2:224840595..224840609,-p15@SERPINE2
Hg19::chr2:224840611..224840624,-p16@SERPINE2
Hg19::chr2:224842298..224842334,-p@chr2:224842298..224842334
-
Hg19::chr2:224845086..224845116,-p@chr2:224845086..224845116
-
Hg19::chr2:224847432..224847474,-p9@SERPINE2
Hg19::chr2:224849494..224849546,+p@chr2:224849494..224849546
+
Hg19::chr2:224849499..224849507,-p22@SERPINE2
Hg19::chr2:224849552..224849572,-p11@SERPINE2
Hg19::chr2:224849573..224849582,-p19@SERPINE2
Hg19::chr2:224849586..224849594,-p25@SERPINE2
Hg19::chr2:224849601..224849622,-p5@SERPINE2
Hg19::chr2:224849631..224849645,-p14@SERPINE2
Hg19::chr2:224849648..224849677,-p3@SERPINE2
Hg19::chr2:224856537..224856545,-p@chr2:224856537..224856545
-
Hg19::chr2:224856546..224856559,-p@chr2:224856546..224856559
-
Hg19::chr2:224856561..224856577,-p@chr2:224856561..224856577
-
Hg19::chr2:224856621..224856634,-p@chr2:224856621..224856634
-
Hg19::chr2:224856692..224856705,-p@chr2:224856692..224856705
-
Hg19::chr2:224856711..224856721,-p@chr2:224856711..224856721
-
Hg19::chr2:224862960..224863008,-p@chr2:224862960..224863008
-
Hg19::chr2:224862976..224862989,+p@chr2:224862976..224862989
+
Hg19::chr2:224863013..224863047,-p@chr2:224863013..224863047
-
Hg19::chr2:224866395..224866417,-p4@SERPINE2
Hg19::chr2:224866423..224866438,-p8@SERPINE2
Hg19::chr2:224866441..224866450,-p21@SERPINE2
Hg19::chr2:224866475..224866482,-p24@SERPINE2
Hg19::chr2:224866525..224866536,-p18@SERPINE2
Hg19::chr2:224866590..224866630,-p2@SERPINE2
Hg19::chr2:224903995..224904010,-p1@SERPINE2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
organism subdivision4.27e-17365
multilaminar epithelium1.05e-1282
somite2.30e-1283
paraxial mesoderm2.30e-1283
presomitic mesoderm2.30e-1283
presumptive segmental plate2.30e-1283
trunk paraxial mesoderm2.30e-1283
presumptive paraxial mesoderm2.30e-1283
multi-cellular organism5.10e-12659
surface structure6.86e-1195
multi-tissue structure8.68e-11347
integument1.36e-1045
integumental system1.36e-1045
dermomyotome2.13e-1070
epithelium2.39e-10309
cell layer3.62e-10312
skin of body4.63e-1040
anatomical system1.43e-08625
skeletal muscle tissue1.49e-0861
striated muscle tissue1.49e-0861
myotome1.49e-0861
artery1.52e-0842
arterial blood vessel1.52e-0842
arterial system1.52e-0842
anatomical group1.59e-08626
muscle tissue2.37e-0863
musculature2.37e-0863
musculature of body2.37e-0863
trunk4.54e-08216
anatomical conduit6.60e-08241
anatomical cluster7.68e-08286
systemic artery1.46e-0733
systemic arterial system1.46e-0733
splanchnic layer of lateral plate mesoderm1.51e-0784
trunk mesenchyme1.73e-07143
tube9.86e-07194


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.