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UBERON:0005721

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Name:pronephric mesoderm
Xrefs:
links:

AAO:0011090
EFO:0003479
TAO:0000067
VHOG:0001239
XAO:0000264

ZFA:0000067
Synonyms: "pronephric anlage" RELATED [XAO:0000264]
"pronephric bulge" RELATED [XAO:0000264]
"pronephric mesenchyme" RELATED [XAO:0000264]
"pronephric primordium" RELATED [XAO:0000264]
Comments:the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007297(presumptive pronephric mesoderm)
part_of:UBERON:0003064(intermediate mesoderm)



Children

develops from:UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
4.54e-44FFCP PHASE1:Mm9::chrX:20419453..20419476,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:20419453..20419476, +
4.54e-44FFCP PHASE2:Mm9::chr10:91753336..91753348,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:91753336..91753348, -
4.54e-44FFCP PHASE2:Mm9::chr7:25563187..25563205,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:25563187..25563205, +
4.54e-44FFCP PHASE2:Mm9::chr5:88272459..88272484,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:88272459..88272484, -
4.54e-44FFCP PHASE1:Mm9::chr1:155722142..155722175,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:155722142..155722175, -
4.54e-44FFCP PHASE2:Mm9::chr5:124447371..124447383,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:124447371..124447383, +
4.54e-44FFCP PHASE2:Mm9::chr11:59845376..59845393,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:59845376..59845393, -
4.54e-44FFCP PHASE2:Mm9::chr13:21385325..21385329,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21385325..21385329, -
4.54e-44FFCP PHASE2:Mm9::chr17:73221062..73221084,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr17:73221062..73221084, +
4.54e-44FFCP PHASE2:Mm9::chr2:164499572..164499580,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Wfdc11
4.54e-44FFCP PHASE2:Mm9::chr14:52608712..52608739,+#_a36a387a3a10bbdf54775f8b8ef579b0p11@Arhgef40
4.54e-44FFCP PHASE2:Mm9::chr13:21378296..21378303,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378296..21378303, +
4.54e-44FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:192816674..192816714, +
4.54e-44FFCP PHASE1:Mm9::chr16:43230846..43230884,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:43230846..43230884, +
4.54e-44FFCP PHASE1:Mm9::chr11:116901540..116901549,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@uc007mmw.1
4.54e-44FFCP PHASE2:Mm9::chr6:49817766..49817772,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:49817766..49817772, -
4.54e-44FFCP PHASE2:Mm9::chr9:35651807..35651818,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:19141371..19141383, +
4.54e-44FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:44261480..44261486, +
4.54e-44FFCP PHASE1:Mm9::chr14:52542661..52542668,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Rnase13
4.54e-44FFCP PHASE2:Mm9::chr13:21379098..21379104,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379098..21379104, -
4.54e-44FFCP PHASE2:Mm9::chr16:92995710..92995753,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:92995710..92995753, +
4.54e-44FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21383212..21383225, -
4.54e-44FFCP PHASE1:Mm9::chr4:106730107..106730125,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:106730107..106730125, -
4.54e-44FFCP PHASE1:Mm9::chr2:160573065..160573077,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:160573065..160573077, +
4.54e-44FFCP PHASE2:Mm9::chr7:105313229..105313234,-#_a36a387a3a10bbdf54775f8b8ef579b0p17@Capn5
4.54e-44FFCP PHASE2:Mm9::chr9:70779586..70779596,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:70779586..70779596, +
4.54e-44FFCP PHASE1:Mm9::chrX:75798097..75798101,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:75798097..75798101, -
4.54e-44FFCP PHASE1:Mm9::chr2:172632171..172632178,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:172632171..172632178, -
4.54e-44FFCP PHASE2:Mm9::chr5:110773580..110773589,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:110773580..110773589, +
4.54e-44FFCP PHASE1:Mm9::chrX:130496286..130496293,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:130496286..130496293, -
4.54e-44FFCP PHASE2:Mm9::chr2:172632171..172632178,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:172632171..172632178, -
4.54e-44FFCP PHASE2:Mm9::chr1:90155707..90155720,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155707..90155720, +
4.54e-44FFCP PHASE1:Mm9::chr6:83487114..83487124,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:83487114..83487124, -
4.54e-44FFCP PHASE1:Mm9::chr2:152302768..152302774,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Defb20
4.54e-44FFCP PHASE1:Mm9::chr12:104945515..104945524,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:104945515..104945524, -
4.54e-44FFCP PHASE1:Mm9::chr11:53937918..53937922,+#_a36a387a3a10bbdf54775f8b8ef579b0p7@P4ha2
4.54e-44FFCP PHASE1:Mm9::chr8:25706074..25706082,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Ido1
4.54e-44FFCP PHASE2:Mm9::chr4:137325863..137325870,-#_a36a387a3a10bbdf54775f8b8ef579b0p15@Alpl
4.54e-44FFCP PHASE1:Mm9::chr2:164434346..164434353,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164434346..164434353, -
4.54e-44FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155707..90155720, +
4.54e-44FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:26611214..26611227, -
4.54e-44FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_a36a387a3a10bbdf54775f8b8ef579b0p21@Pgap2
4.54e-44FFCP PHASE2:Mm9::chr2:164434346..164434353,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164434346..164434353, -
4.54e-44FFCP PHASE2:Mm9::chrX:75798132..75798152,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:75798132..75798152, -
4.54e-44FFCP PHASE1:Mm9::chr8:96014490..96014496,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:96014490..96014496, +
4.54e-44FFCP PHASE2:Mm9::chr12:114385720..114385732,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:114385720..114385732, -
4.54e-44FFCP PHASE1:Mm9::chr2:75866210..75866235,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:75866210..75866235, +
4.54e-44FFCP PHASE1:Mm9::chr1:165219453..165219469,-#_a36a387a3a10bbdf54775f8b8ef579b0p11@Prrx1
4.54e-44FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:25752228..25752237, +
4.54e-44FFCP PHASE2:Mm9::chr16:23308115..23308126,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:23308115..23308126, +
4.54e-44FFCP PHASE1:Mm9::chr4:134893699..134893708,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:134893699..134893708, +
4.54e-44FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:100350777..100350782, +
4.54e-44FFCP PHASE1:Mm9::chr13:21378774..21378782,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378774..21378782, -
4.54e-44FFCP PHASE2:Mm9::chr5:120078716..120078763,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:120078716..120078763, -
4.54e-44FFCP PHASE1:Mm9::chr9:35651764..35651782,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chr15:72756032..72756041,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:72756032..72756041, -
4.54e-44FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@uc007mmw.1
4.54e-44FFCP PHASE1:Mm9::chr8:22061771..22061777,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Gm6040, p3@LOC100503992
4.54e-44FFCP PHASE1:Mm9::chr1:87936213..87936218,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:87936213..87936218, +
4.54e-44FFCP PHASE1:Mm9::chr14:63611201..63611210,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:63611201..63611210, +
4.54e-44FFCP PHASE2:Mm9::chr16:28323634..28323657,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:28323634..28323657, -

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