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UBERON:0005721

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Name:pronephric mesoderm
Xrefs:
links:

AAO:0011090
EFO:0003479
TAO:0000067
VHOG:0001239
XAO:0000264

ZFA:0000067
Synonyms: "pronephric anlage" RELATED [XAO:0000264]
"pronephric bulge" RELATED [XAO:0000264]
"pronephric mesenchyme" RELATED [XAO:0000264]
"pronephric primordium" RELATED [XAO:0000264]
Comments:the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007297(presumptive pronephric mesoderm)
part_of:UBERON:0003064(intermediate mesoderm)



Children

develops from:UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
4.54e-44FFCP PHASE2:Mm9::chr19:24582739..24582748,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr19:24582739..24582748, -
4.54e-44FFCP PHASE2:Mm9::chr11:53938008..53938022,+#_a36a387a3a10bbdf54775f8b8ef579b0p11@P4ha2
4.54e-44FFCP PHASE2:Mm9::chr7:31507623..31507631,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Atp4a
4.54e-44FFCP PHASE1:Mm9::chr5:75559819..75559830,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:75559819..75559830, +
4.54e-44FFCP PHASE2:Mm9::chr4:106730107..106730125,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:106730107..106730125, -
4.54e-44FFCP PHASE1:Mm9::chr2:164464249..164464258,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164464249..164464258, -
4.54e-44FFCP PHASE1:Mm9::chr1:90155966..90155989,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155966..90155989, +
4.54e-44FFCP PHASE1:Mm9::chr1:155698166..155698174,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:155698166..155698174, -
4.54e-44FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:43230846..43230884, +
4.54e-44FFCP PHASE2:Mm9::chr3:146278590..146278595,-#_a36a387a3a10bbdf54775f8b8ef579b0p10@Dnase2b
4.54e-44FFCP PHASE2:Mm9::chr13:21381141..21381155,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21381141..21381155, -
4.54e-44FFCP PHASE2:Mm9::chr15:54678983..54678995,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:54678983..54678995, -
4.54e-44FFCP PHASE2:Mm9::chr14:52542711..52542716,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Rnase13
4.54e-44FFCP PHASE2:Mm9::chr1:168436322..168436326,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:168436322..168436326, -
4.54e-44FFCP PHASE1:Mm9::chr8:126604677..126604701,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:126604677..126604701, -
4.54e-44FFCP PHASE2:Mm9::chr2:152290340..152290344,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Defb23
4.54e-44FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:75866210..75866235, +
4.54e-44FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:151928014..151928021, +
4.54e-44FFCP PHASE2:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:103837894..103837900, +
4.54e-44FFCP PHASE1:Mm9::chr14:51734060..51734066,+#_a36a387a3a10bbdf54775f8b8ef579b0p5@Eddm3b
4.54e-44FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379125..21379144, -
4.54e-44FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155966..90155989, +
4.54e-44FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:46301295..46301302, -
4.54e-44FFCP PHASE2:Mm9::chr13:21379065..21379072,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379065..21379072, -
4.54e-44FFCP PHASE1:Mm9::chr4:33600466..33600491,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:33600466..33600491, -
4.54e-44FFCP PHASE2:Mm9::chr5:31377177..31377184,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31377177..31377184, +
4.54e-44FFCP PHASE1:Mm9::chr5:35930706..35930717,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:35930706..35930717, +
4.54e-44FFCP PHASE1:Mm9::chr1:89597725..89597743,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:89597725..89597743, +
4.54e-44FFCP PHASE2:Mm9::chr14:51677141..51677148,-#_a36a387a3a10bbdf54775f8b8ef579b0p7@Rnase12
4.54e-44FFCP PHASE1:Mm9::chr11:59845376..59845393,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:59845376..59845393, -
4.54e-44FFCP PHASE2:Mm9::chr13:21379322..21379338,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379322..21379338, -
4.54e-44FFCP PHASE2:Mm9::chr6:147624258..147624285,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:147624258..147624285, -
4.54e-44FFCP PHASE2:Mm9::chr2:164464249..164464258,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164464249..164464258, -
4.54e-44FFCP PHASE2:Mm9::chr14:51734060..51734066,+#_a36a387a3a10bbdf54775f8b8ef579b0p5@Eddm3b
4.54e-44FFCP PHASE1:Mm9::chr2:158083973..158083982,+#_a36a387a3a10bbdf54775f8b8ef579b0p3@Bpi
4.54e-44FFCP PHASE1:Mm9::chr17:35249011..35249020,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr17:35249011..35249020, -
4.54e-44FFCP PHASE1:Mm9::chr12:16664775..16664784,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:16664775..16664784, +
4.54e-44FFCP PHASE2:Mm9::chr8:126591032..126591039,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:126591032..126591039, +
4.54e-44FFCP PHASE2:Mm9::chr1:165219453..165219469,-#_a36a387a3a10bbdf54775f8b8ef579b0p11@Prrx1
4.54e-44FFCP PHASE1:Mm9::chr2:167480413..167480463,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:167480413..167480463, -
4.54e-44FFCP PHASE1:Mm9::chr1:168436322..168436326,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:168436322..168436326, -
4.54e-44FFCP PHASE2:Mm9::chrX:50280152..50280179,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:50280152..50280179, +
4.54e-44FFCP PHASE2:Mm9::chr18:44261480..44261486,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:44261480..44261486, +
4.54e-44FFCP PHASE1:Mm9::chr4:137325863..137325870,-#_a36a387a3a10bbdf54775f8b8ef579b0p15@Alpl
4.54e-44FFCP PHASE1:Mm9::chr14:51676936..51676963,-#_a36a387a3a10bbdf54775f8b8ef579b0p6@Rnase12
4.54e-44FFCP PHASE1:Mm9::chr13:21378871..21378901,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378871..21378901, -
4.54e-44FFCP PHASE2:Mm9::chr8:19141447..19141469,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:19141447..19141469, +
4.54e-44FFCP PHASE1:Mm9::chr9:35657557..35657582,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Gm3428
4.54e-44FFCP PHASE2:Mm9::chr2:25677632..25677636,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:25677632..25677636, -
4.54e-44FFCP PHASE1:Mm9::chr3:107731917..107731926,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr3:107731917..107731926, -
4.54e-44FFCP PHASE1:Mm9::chrX:156829476..156829504,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:156829476..156829504, +
4.54e-44FFCP PHASE2:Mm9::chr16:22504758..22504766,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:22504758..22504766, -
4.54e-44FFCP PHASE1:Mm9::chr3:65253465..65253475,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr3:65253465..65253475, +
4.54e-44FFCP PHASE1:Mm9::chr18:62775330..62775347,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:62775330..62775347, -
4.54e-44FFCP PHASE2:Mm9::chr2:148625223..148625234,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:148625223..148625234, +
4.54e-44FFCP PHASE1:Mm9::chr12:110132148..110132154,+#_a36a387a3a10bbdf54775f8b8ef579b0p3@Wdr25
4.54e-44FFCP PHASE2:Mm9::chr1:87936213..87936218,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:87936213..87936218, +
4.54e-44FFCP PHASE2:Mm9::chr14:69143309..69143319,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:69143309..69143319, -
4.54e-44FFCP PHASE1:Mm9::chr6:118298429..118298448,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:118298429..118298448, +
4.54e-44FFCP PHASE1:Mm9::chr16:23308115..23308126,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:23308115..23308126, +
4.54e-44FFCP PHASE1:Mm9::chr14:67453354..67453365,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:67453354..67453365, -
4.54e-44FFCP PHASE1:Mm9::chr11:101959282..101959299,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101959282..101959299, -

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