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MCL coexpression mm9:1246

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:60638430..60638441,+p7@Tbata
Mm9::chr17:34767834..34767884,+p5@Prrt1
Mm9::chr17:57289056..57289060,-p1@Cd70
Mm9::chr18:33098795..33098859,+p2@Camk4
Mm9::chr4:63157016..63157067,-p1@Whrn
Mm9::chr7:36514763..36514812,-p2@Dpy19l3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
regional part of nervous system2.69e-1654
ecto-epithelium5.13e-1673
neurectoderm1.09e-1564
neural plate1.09e-1564
presumptive neural plate1.09e-1564
ectoderm-derived structure2.60e-1595
ectoderm2.60e-1595
presumptive ectoderm2.60e-1595
central nervous system2.69e-1573
neural tube4.22e-1552
neural rod4.22e-1552
future spinal cord4.22e-1552
neural keel4.22e-1552
nervous system2.20e-1475
brain1.16e-1347
future brain1.16e-1347
pre-chordal neural plate1.86e-1349
regional part of brain4.22e-1346
anterior neural tube4.89e-1240
regional part of forebrain1.56e-1139
forebrain1.56e-1139
future forebrain1.56e-1139
gray matter3.23e-1134
brain grey matter7.92e-1029
regional part of telencephalon7.92e-1029
telencephalon7.92e-1029
organ part9.92e-1099
structure with developmental contribution from neural crest3.20e-0992
craniocervical region5.36e-0936
thymus5.31e-0823
neck5.31e-0823
respiratory system epithelium5.31e-0823
hemolymphoid system gland5.31e-0823
pharyngeal epithelium5.31e-0823
thymic region5.31e-0823
pharyngeal gland5.31e-0823
entire pharyngeal arch endoderm5.31e-0823
thymus primordium5.31e-0823
early pharyngeal endoderm5.31e-0823
occipital lobe5.95e-0810
visual cortex5.95e-0810
neocortex5.95e-0810
pharynx1.30e-0724
gland of gut1.30e-0724
upper respiratory tract1.30e-0724
chordate pharynx1.30e-0724
pharyngeal arch system1.30e-0724
pharyngeal region of foregut1.30e-0724
anterior region of body1.46e-0743
cerebral cortex2.85e-0721
cerebral hemisphere2.85e-0721
pallium2.85e-0721
regional part of cerebral cortex5.20e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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