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Coexpression cluster:C91

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Full id: C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair



Phase1 CAGE Peaks

Hg19::chr10:14083240..14083244,-p@chr10:14083240..14083244
-
Hg19::chr10:54248451..54248453,-p@chr10:54248451..54248453
-
Hg19::chr11:10349108..10349113,+p@chr11:10349108..10349113
+
Hg19::chr11:12107935..12107951,-p@chr11:12107935..12107951
-
Hg19::chr11:12108136..12108151,+p4@ENST00000527997
Hg19::chr11:28779323..28779364,-p@chr11:28779323..28779364
-
Hg19::chr11:28779555..28779601,+p@chr11:28779555..28779601
+
Hg19::chr11:28858122..28858128,+p@chr11:28858122..28858128
+
Hg19::chr11:28858441..28858464,+p@chr11:28858441..28858464
+
Hg19::chr11:29207409..29207435,+p@chr11:29207409..29207435
+
Hg19::chr11:29328382..29328391,+p@chr11:29328382..29328391
+
Hg19::chr11:29331768..29331769,-p@chr11:29331768..29331769
-
Hg19::chr11:36796505..36796529,+p@chr11:36796505..36796529
+
Hg19::chr11:5385751..5385762,+p@chr11:5385751..5385762
+
Hg19::chr11:9588526..9588534,+p@chr11:9588526..9588534
+
Hg19::chr12:16505568..16505582,-p@chr12:16505568..16505582
-
Hg19::chr12:65959415..65959422,-p@chr12:65959415..65959422
-
Hg19::chr12:65959975..65959997,+p@chr12:65959975..65959997
+
Hg19::chr12:66009286..66009299,+p@chr12:66009286..66009299
+
Hg19::chr12:71054737..71054749,-p@chr12:71054737..71054749
-
Hg19::chr12:76056397..76056405,-p@chr12:76056397..76056405
-
Hg19::chr12:76108116..76108123,-p@chr12:76108116..76108123
-
Hg19::chr12:76108149..76108159,-p@chr12:76108149..76108159
-
Hg19::chr12:76175230..76175237,-p@chr12:76175230..76175237
-
Hg19::chr12:76175239..76175250,-p@chr12:76175239..76175250
-
Hg19::chr12:76219575..76219590,-p@chr12:76219575..76219590
-
Hg19::chr12:76270706..76270708,-p@chr12:76270706..76270708
-
Hg19::chr12:88782727..88782732,-p@chr12:88782727..88782732
-
Hg19::chr12:96199635..96199641,-p@chr12:96199635..96199641
-
Hg19::chr13:38275506..38275512,-p@chr13:38275506..38275512
-
Hg19::chr13:84979566..84979573,-p@chr13:84979566..84979573
-
Hg19::chr14:23158454..23158473,-p@chr14:23158454..23158473
-
Hg19::chr14:68614207..68614210,-p@chr14:68614207..68614210
-
Hg19::chr14:79436226..79436229,+p@chr14:79436226..79436229
+
Hg19::chr15:32975140..32975144,+p@chr15:32975140..32975144
+
Hg19::chr15:33066256..33066281,-p@chr15:33066256..33066281
-
Hg19::chr15:33144134..33144145,+p@chr15:33144134..33144145
+
Hg19::chr15:33212102..33212104,-p@chr15:33212102..33212104
-
Hg19::chr15:39087787..39087794,-p@chr15:39087787..39087794
-
Hg19::chr15:39087815..39087824,-p@chr15:39087815..39087824
-
Hg19::chr15:39288691..39288698,+p@chr15:39288691..39288698
+
Hg19::chr15:39420495..39420503,+p@chr15:39420495..39420503
+
Hg19::chr15:39420650..39420666,+p@chr15:39420650..39420666
+
Hg19::chr15:39765414..39765425,+p1@ENST00000560552
Hg19::chr15:39765435..39765438,+p2@ENST00000560552
Hg19::chr15:88212656..88212660,+p@chr15:88212656..88212660
+
Hg19::chr16:88337786..88337798,-p@chr16:88337786..88337798
-
Hg19::chr17:39109341..39109347,+p@chr17:39109341..39109347
+
Hg19::chr17:57841314..57841323,-p@chr17:57841314..57841323
-
Hg19::chr17:62679110..62679113,+p@chr17:62679110..62679113
+
Hg19::chr17:67057203..67057228,-p4@ABCA9
Hg19::chr18:20143107..20143124,-p@chr18:20143107..20143124
-
Hg19::chr18:55487026..55487030,-p@chr18:55487026..55487030
-
Hg19::chr19:43584268..43584275,+p@chr19:43584268..43584275
+
Hg19::chr1:115732772..115732797,-p@chr1:115732772..115732797
-
Hg19::chr1:115733003..115733008,+p@chr1:115733003..115733008
+
Hg19::chr1:115801241..115801245,+p@chr1:115801241..115801245
+
Hg19::chr1:115873480..115873484,+p@chr1:115873480..115873484
+
Hg19::chr1:160881636..160881640,+p@chr1:160881636..160881640
+
Hg19::chr1:172961144..172961147,+p@chr1:172961144..172961147
+
Hg19::chr1:183204105..183204116,+p@chr1:183204105..183204116
+
Hg19::chr1:199267284..199267291,+p@chr1:199267284..199267291
+
Hg19::chr1:215157211..215157225,+p@chr1:215157211..215157225
+
Hg19::chr1:215157270..215157279,+p@chr1:215157270..215157279
+
Hg19::chr1:219514172..219514177,-p@chr1:219514172..219514177
-
Hg19::chr1:226851965..226851967,+p@chr1:226851965..226851967
+
Hg19::chr1:238811500..238811513,+p@chr1:238811500..238811513
+
Hg19::chr1:246579848..246579858,-p@chr1:246579848..246579858
-
Hg19::chr1:86073371..86073381,+p@chr1:86073371..86073381
+
Hg19::chr1:86078791..86078795,+p@chr1:86078791..86078795
+
Hg19::chr20:7717290..7717300,+p@chr20:7717290..7717300
+
Hg19::chr20:7741649..7741652,+p@chr20:7741649..7741652
+
Hg19::chr20:7755823..7755848,-p@chr20:7755823..7755848
-
Hg19::chr21:28945118..28945164,-p@chr21:28945118..28945164
-
Hg19::chr21:28955184..28955188,+p@chr21:28955184..28955188
+
Hg19::chr21:30000326..30000330,+p@chr21:30000326..30000330
+
Hg19::chr2:151537893..151537898,-p@chr2:151537893..151537898
-
Hg19::chr2:159992786..159992791,+p20@TANC1
Hg19::chr2:162927693..162927706,-p@chr2:162927693..162927706
-
Hg19::chr2:162929164..162929167,+p@chr2:162929164..162929167
+
Hg19::chr2:162929288..162929298,+p5@ENST00000418335
Hg19::chr2:162943708..162943739,+p@chr2:162943708..162943739
+
Hg19::chr2:162949963..162949969,+p1@ENST00000432251
Hg19::chr2:18807662..18807665,-p@chr2:18807662..18807665
-
Hg19::chr2:196478728..196478750,-p@chr2:196478728..196478750
-
Hg19::chr2:216301308..216301324,+p@chr2:216301308..216301324
+
Hg19::chr2:216578345..216578377,+p@chr2:216578345..216578377
+
Hg19::chr2:216588131..216588134,+p@chr2:216588131..216588134
+
Hg19::chr2:216623643..216623668,+p@chr2:216623643..216623668
+
Hg19::chr2:216623697..216623706,+p@chr2:216623697..216623706
+
Hg19::chr2:216638374..216638390,-p@chr2:216638374..216638390
-
Hg19::chr2:228682897..228682916,-p@chr2:228682897..228682916
-
Hg19::chr2:37938667..37938670,-p@chr2:37938667..37938670
-
Hg19::chr2:38055275..38055310,-p@chr2:38055275..38055310
-
Hg19::chr2:54199052..54199059,-p@chr2:54199052..54199059
-
Hg19::chr2:55327810..55327812,-p@chr2:55327810..55327812
-
Hg19::chr2:56089534..56089541,-p@chr2:56089534..56089541
-
Hg19::chr2:56220069..56220077,+p@chr2:56220069..56220077
+
Hg19::chr2:67730504..67730512,+p@chr2:67730504..67730512
+
Hg19::chr2:72789317..72789322,+p@chr2:72789317..72789322
+
Hg19::chr3:101899338..101899342,+p@chr3:101899338..101899342
+
Hg19::chr3:106464246..106464276,-p@chr3:106464246..106464276
-
Hg19::chr3:111480481..111480482,+p@chr3:111480481..111480482
+
Hg19::chr3:111522000..111522033,-p@chr3:111522000..111522033
-
Hg19::chr3:111584345..111584377,+p@chr3:111584345..111584377
+
Hg19::chr3:112359324..112359338,+p@chr3:112359324..112359338
+
Hg19::chr3:134046037..134046050,+p@chr3:134046037..134046050
+
Hg19::chr3:141105560..141105572,-p@chr3:141105560..141105572
-
Hg19::chr3:141105574..141105581,-p@chr3:141105574..141105581
-
Hg19::chr3:141105589..141105621,-p@chr3:141105589..141105621
-
Hg19::chr3:156207749..156207761,+p@chr3:156207749..156207761
+
Hg19::chr3:156437182..156437193,+p@chr3:156437182..156437193
+
Hg19::chr3:156877038..156877058,-p35@CCNL1
Hg19::chr3:156878186..156878199,-p71@CCNL1
Hg19::chr3:156878415..156878435,-p9@CCNL1
Hg19::chr3:170430340..170430344,+p@chr3:170430340..170430344
+
Hg19::chr3:170459091..170459101,-p4@ENST00000473110
Hg19::chr3:170459106..170459125,-p1@ENST00000473110
Hg19::chr3:170463391..170463423,+p@chr3:170463391..170463423
+
Hg19::chr3:170464281..170464285,+p@chr3:170464281..170464285
+
Hg19::chr3:170469063..170469069,+p@chr3:170469063..170469069
+
Hg19::chr3:29800057..29800074,+p@chr3:29800057..29800074
+
Hg19::chr3:71222427..71222440,+p@chr3:71222427..71222440
+
Hg19::chr4:10182011..10182023,-p@chr4:10182011..10182023
-
Hg19::chr4:114355620..114355627,+p@chr4:114355620..114355627
+
Hg19::chr4:115193252..115193270,-p@chr4:115193252..115193270
-
Hg19::chr4:120133504..120133520,-p1@AK098126
Hg19::chr4:123686305..123686329,+p@chr4:123686305..123686329
+
Hg19::chr4:13890014..13890023,+p@chr4:13890014..13890023
+
Hg19::chr4:15692343..15692349,+p@chr4:15692343..15692349
+
Hg19::chr4:181844926..181844937,+p@chr4:181844926..181844937
+
Hg19::chr4:38143865..38143904,-p@chr4:38143865..38143904
-
Hg19::chr4:38147484..38147500,-p@chr4:38147484..38147500
-
Hg19::chr4:47533429..47533432,-p@chr4:47533429..47533432
-
Hg19::chr4:67281053..67281056,-p@chr4:67281053..67281056
-
Hg19::chr4:67292646..67292650,-p@chr4:67292646..67292650
-
Hg19::chr4:67298860..67298867,-p@chr4:67298860..67298867
-
Hg19::chr4:67300735..67300776,-p@chr4:67300735..67300776
-
Hg19::chr4:67430351..67430354,-p@chr4:67430351..67430354
-
Hg19::chr4:67441054..67441061,+p@chr4:67441054..67441061
+
Hg19::chr4:77703570..77703577,+p@chr4:77703570..77703577
+
Hg19::chr4:81159520..81159523,+p@chr4:81159520..81159523
+
Hg19::chr4:88930306..88930310,+p@chr4:88930306..88930310
+
Hg19::chr4:99934696..99934700,-p@chr4:99934696..99934700
-
Hg19::chr5:111342511..111342533,-p@chr5:111342511..111342533
-
Hg19::chr5:14109718..14109721,+p@chr5:14109718..14109721
+
Hg19::chr5:144875561..144875565,+p@chr5:144875561..144875565
+
Hg19::chr5:151066253..151066272,-p@chr5:151066253..151066272
-
Hg19::chr5:163602194..163602199,-p@chr5:163602194..163602199
-
Hg19::chr5:163787736..163787752,-p@chr5:163787736..163787752
-
Hg19::chr5:37772283..37772287,+p@chr5:37772283..37772287
+
Hg19::chr5:52660072..52660094,-p@chr5:52660072..52660094
-
Hg19::chr5:53358788..53358795,-p@chr5:53358788..53358795
-
Hg19::chr5:97750593..97750597,-p@chr5:97750593..97750597
-
Hg19::chr6:121837348..121837351,+p@chr6:121837348..121837351
+
Hg19::chr6:121843766..121843798,+p@chr6:121843766..121843798
+
Hg19::chr6:135231685..135231692,+p@chr6:135231685..135231692
+
Hg19::chr6:136397717..136397720,-p@chr6:136397717..136397720
-
Hg19::chr6:140070083..140070090,+p@chr6:140070083..140070090
+
Hg19::chr6:57128349..57128352,+p@chr6:57128349..57128352
+
Hg19::chr7:119692917..119692924,-p@chr7:119692917..119692924
-
Hg19::chr7:120724895..120724911,-p@chr7:120724895..120724911
-
Hg19::chr7:139295794..139295798,+p@chr7:139295794..139295798
+
Hg19::chr7:22629318..22629324,+p1@ENST00000439823
Hg19::chr7:22687639..22687644,+p@chr7:22687639..22687644
+
Hg19::chr7:32133423..32133424,+p@chr7:32133423..32133424
+
Hg19::chr7:34019832..34019836,+p@chr7:34019832..34019836
+
Hg19::chr7:41956273..41956284,-p@chr7:41956273..41956284
-
Hg19::chr7:47835322..47835327,-p@chr7:47835322..47835327
-
Hg19::chr7:84349905..84349926,-p@chr7:84349905..84349926
-
Hg19::chr7:84349931..84349955,-p@chr7:84349931..84349955
-
Hg19::chr7:84807360..84807364,+p@chr7:84807360..84807364
+
Hg19::chr7:93928562..93928567,+p@chr7:93928562..93928567
+
Hg19::chr8:107870700..107870705,-p@chr8:107870700..107870705
-
Hg19::chr8:11373722..11373763,+p@chr8:11373722..11373763
+
Hg19::chr8:119452230..119452235,+p@chr8:119452230..119452235
+
Hg19::chr8:123139671..123139687,+p@chr8:123139671..123139687
+
Hg19::chr8:123141284..123141287,-p@chr8:123141284..123141287
-
Hg19::chr8:123376383..123376386,+p@chr8:123376383..123376386
+
Hg19::chr8:123446690..123446696,+p@chr8:123446690..123446696
+
Hg19::chr8:125193673..125193689,-p@chr8:125193673..125193689
-
Hg19::chr8:129188825..129188841,-p@chr8:129188825..129188841
-
Hg19::chr8:129522281..129522284,-p@chr8:129522281..129522284
-
Hg19::chr8:129527052..129527059,-p@chr8:129527052..129527059
-
Hg19::chr8:13230011..13230026,-p@chr8:13230011..13230026
-
Hg19::chr8:23210765..23210805,+p@chr8:23210765..23210805
+
Hg19::chr8:23213977..23213984,+p@chr8:23213977..23213984
+
Hg19::chr8:37003588..37003608,-p@chr8:37003588..37003608
-
Hg19::chr8:69832864..69832865,+p@chr8:69832864..69832865
+
Hg19::chr8:69834272..69834299,-p@chr8:69834272..69834299
-
Hg19::chr8:69837388..69837402,-p@chr8:69837388..69837402
-
Hg19::chr9:107039238..107039243,-p@chr9:107039238..107039243
-
Hg19::chr9:114720627..114720666,+p@chr9:114720627..114720666
+
Hg19::chr9:114811656..114811667,+p@chr9:114811656..114811667
+
Hg19::chr9:114811717..114811737,+p@chr9:114811717..114811737
+
Hg19::chr9:114835859..114835862,+p@chr9:114835859..114835862
+
Hg19::chr9:118356219..118356259,+p@chr9:118356219..118356259
+
Hg19::chr9:118413157..118413164,-p@chr9:118413157..118413164
-
Hg19::chr9:118413835..118413843,-p@chr9:118413835..118413843
-
Hg19::chr9:13706264..13706267,+p@chr9:13706264..13706267
+
Hg19::chr9:13707925..13707941,+p@chr9:13707925..13707941
+
Hg19::chr9:83647430..83647434,+p@chr9:83647430..83647434
+
Hg19::chrX:3445372..3445378,-p@chrX:3445372..3445378
-
Hg19::chrX:45376982..45376988,+p@chrX:45376982..45376988
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
somite3.07e-2383
paraxial mesoderm3.07e-2383
presomitic mesoderm3.07e-2383
presumptive segmental plate3.07e-2383
trunk paraxial mesoderm3.07e-2383
presumptive paraxial mesoderm3.07e-2383
vasculature9.99e-2279
vascular system9.99e-2279
multilaminar epithelium3.92e-2182
dermomyotome9.49e-2170
splanchnic layer of lateral plate mesoderm2.41e-2084
vessel1.51e-1969
artery2.47e-1942
arterial blood vessel2.47e-1942
arterial system2.47e-1942
blood vessel6.99e-1960
epithelial tube open at both ends6.99e-1960
blood vasculature6.99e-1960
vascular cord6.99e-1960
skeletal muscle tissue9.90e-1961
striated muscle tissue9.90e-1961
myotome9.90e-1961
muscle tissue9.20e-1863
musculature9.20e-1863
musculature of body9.20e-1863
cardiovascular system3.88e-16110
systemic artery5.87e-1633
systemic arterial system5.87e-1633
trunk mesenchyme7.24e-16143
circulatory system1.92e-15113
epithelial tube3.30e-15118
cell layer4.70e-14312
unilaminar epithelium5.69e-14138
epithelium1.01e-13309
organism subdivision1.65e-11365
anatomical system1.94e-11625
anatomical group3.23e-11626
multi-cellular organism1.96e-10659
trunk6.90e-10216
integument1.21e-0945
integumental system1.21e-0945
aorta1.30e-0921
aortic system1.30e-0921
anatomical conduit3.39e-09241
skin of body5.89e-0940
surface structure1.38e-0895
musculoskeletal system6.98e-08167
tube7.86e-08194
anatomical cluster1.10e-07286
heart3.25e-0724
primitive heart tube3.25e-0724
primary heart field3.25e-0724
anterior lateral plate mesoderm3.25e-0724
heart tube3.25e-0724
heart primordium3.25e-0724
cardiac mesoderm3.25e-0724
cardiogenic plate3.25e-0724
heart rudiment3.25e-0724
blood vessel smooth muscle4.54e-0710
arterial system smooth muscle4.54e-0710
artery smooth muscle tissue4.54e-0710
aorta smooth muscle tissue4.54e-0710
Disease
Ontology termp-valuen
ovarian cancer7.10e-0814


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#1051652.539826449404974.68082420165369e-136.84678709799033e-11
EP300#2033802.65644773577381.35062987529171e-172.87874354174676e-15
ESR1#2099152.262397301187830.002966980173026560.0158144555624539
FOS#2353682.999318436298142.64408983603706e-175.4899820752659e-15
GATA2#2624754.685636666747793.6698247966208e-311.5392483210212e-28
GATA3#2625192.536734366602520.000212620714811310.00245152294481988
JUN#3725774.722979646126952.50618264375689e-321.10908139462426e-29
JUND#3727672.297267078947841.75325451469847e-112.12669161742849e-09
NR3C1#2908322.348709542144796.18715449940844e-060.000182846697443044
PRDM1#63963.877381052278260.004929941781788110.0230391171356796
SIRT6#5154853.765647156618260.01124293297375360.041275333128721
STAT3#6774603.093960293280669.81881038044625e-161.85102299155853e-13



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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