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Coexpression cluster:C1208

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Full id: C1208_Chondrocyte_Preadipocyte_Fibroblast_umbilical_Smooth_skin_Olfactory



Phase1 CAGE Peaks

Hg19::chr15:48702329..48702343,-p@chr15:48702329..48702343
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Hg19::chr17:48262651..48262694,-p7@COL1A1
Hg19::chr3:120113167..120113185,-p@chr3:120113167..120113185
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Hg19::chr3:120113197..120113217,-p@chr3:120113197..120113217
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Hg19::chr7:94059849..94059911,+p@chr7:94059849..94059911
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Hg19::chr7:94059923..94059935,+p@chr7:94059923..94059935
+
Hg19::chr7:94059946..94059957,+p@chr7:94059946..94059957
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
somite7.54e-2083
paraxial mesoderm7.54e-2083
presomitic mesoderm7.54e-2083
presumptive segmental plate7.54e-2083
trunk paraxial mesoderm7.54e-2083
presumptive paraxial mesoderm7.54e-2083
dermomyotome2.81e-1970
skeletal muscle tissue2.01e-1861
striated muscle tissue2.01e-1861
myotome2.01e-1861
muscle tissue2.67e-1863
musculature2.67e-1863
musculature of body2.67e-1863
multilaminar epithelium1.72e-1782
trunk mesenchyme3.24e-15143
organism subdivision2.71e-12365
trunk7.87e-11216
splanchnic layer of lateral plate mesoderm2.21e-0984
multi-cellular organism1.78e-08659
integument5.17e-0845
integumental system5.17e-0845
vasculature6.11e-0879
vascular system6.11e-0879
surface structure6.92e-0895
multi-tissue structure1.40e-07347
unilaminar epithelium1.49e-07138
artery2.31e-0742
arterial blood vessel2.31e-0742
arterial system2.31e-0742
skin of body7.38e-0740


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.