FFCP PHASE1:Mm9::chr1:72583558..72583573,-: Difference between revisions
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{{FFCP|EntrezGene=381270|HGNC=|MCL_coexpression_id=1411|UniProt=Q80TE3|association_with_transcript=-54bp_to_ENSMUST00000047786_5end|description=CAGE_peak_5_at_March4_5end|id=chr1:72583558..72583573,-|ontology_enrichment_celltype=CL:0000540!6.65e-20!33;CL:0000047!6.65e-20!33;CL:0000031!6.65e-20!33;CL:0000404!6.65e-20!33;CL:0000117!9.49e-18!23;CL:0000337!9.49e-18!23;CL:0002319!2.02e-16!43;CL:0000393!9.11e-16!39;CL:0000211!9.11e-16!39;CL:0000221!9.72e-16!44;CL:0000133!9.72e-16!44;CL:0000055!5.62e-13!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.67e-32,23;CL:0000337,4.67e-32,23;CL:0000540,2.20e-30,33;CL:0000047,2.20e-30,33;CL:0000031,2.20e-30,33;CL:0000404,2.20e-30,33;CL:0000393,1.01e-24,39;CL:0000211,1.01e-24,39;CL:0002319,7.92e-22,43;CL:0000221,3.46e-21,44;CL:0000133,3.46e-21,44;CL:0002321,5.15e-11,70;CL:0002609,2.87e-09,6;CL:0000723,3.99e-07,91;CL:0000048,3.99e-07,91;CL:0002612,4.70e-07,3;CL:0000120,5.93e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.25e-38!75;UBERON:0001016!3.25e-38!75;UBERON:0001017!1.36e-37!73;UBERON:0005743!1.36e-37!73;UBERON:0002346!1.72e-31!71;UBERON:0003075!1.72e-31!71;UBERON:0007284!1.72e-31!71;UBERON:0001049!8.78e-31!52;UBERON:0005068!8.78e-31!52;UBERON:0006241!8.78e-31!52;UBERON:0007135!8.78e-31!52;UBERON:0004121!1.28e-30!102;UBERON:0000924!1.28e-30!102;UBERON:0006601!1.28e-30!102;UBERON:0000955!2.33e-26!50;UBERON:0006238!2.33e-26!50;UBERON:0002616!8.56e-26!49;UBERON:0003080!1.48e-24!40;UBERON:0002020!7.06e-24!34;UBERON:0002780!8.67e-24!39;UBERON:0001890!8.67e-24!39;UBERON:0006240!8.67e-24!39;UBERON:0000033!3.75e-23!63;UBERON:0003056!1.39e-22!49;UBERON:0002791!2.11e-19!29;UBERON:0003528!2.11e-19!29;UBERON:0001893!2.11e-19!29;UBERON:0000956!2.69e-13!21;UBERON:0001869!2.69e-13!21;UBERON:0000203!2.69e-13!21;UBERON:0007811!5.95e-12!86;UBERON:0000153!4.78e-10!94;UBERON:0002619!9.12e-10!17;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0002420!2.36e-07!8;UBERON:0007245!2.36e-07!8;UBERON:0010009!2.36e-07!8;UBERON:0010011!2.36e-07!8;UBERON:0000454!2.36e-07!8;UBERON:0000025!2.63e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.79e-47,73;UBERON:0001016,5.90e-46,75;UBERON:0001049,2.97e-45,52;UBERON:0005068,2.97e-45,52;UBERON:0006241,2.97e-45,52;UBERON:0007135,2.97e-45,52;UBERON:0000073,2.32e-43,54;UBERON:0002346,1.04e-41,64;UBERON:0003075,1.04e-41,64;UBERON:0007284,1.04e-41,64;UBERON:0002020,3.08e-38,34;UBERON:0004121,4.15e-36,95;UBERON:0000924,4.15e-36,95;UBERON:0006601,4.15e-36,95;UBERON:0010371,1.95e-35,73;UBERON:0002616,1.72e-34,46;UBERON:0000955,1.37e-33,47;UBERON:0006238,1.37e-33,47;UBERON:0003080,4.17e-33,40;UBERON:0002780,1.38e-31,39;UBERON:0001890,1.38e-31,39;UBERON:0006240,1.38e-31,39;UBERON:0003528,5.13e-29,29;UBERON:0002791,5.13e-29,29;UBERON:0001893,5.13e-29,29;UBERON:0003056,9.69e-28,49;UBERON:0010314,3.25e-26,92;UBERON:0000956,8.26e-19,21;UBERON:0001869,8.26e-19,21;UBERON:0000203,8.26e-19,21;UBERON:0000025,8.04e-16,114;UBERON:0004111,3.33e-14,122;UBERON:0002240,2.59e-12,6;UBERON:0005174,2.59e-12,6;UBERON:0001137,2.59e-12,6;UBERON:0002619,6.08e-12,17;UBERON:0011216,8.23e-12,194;UBERON:0003076,8.43e-12,12;UBERON:0003057,8.43e-12,12;UBERON:0002420,2.13e-11,8;UBERON:0007245,2.13e-11,8;UBERON:0010009,2.13e-11,8;UBERON:0010011,2.13e-11,8;UBERON:0000454,2.13e-11,8;UBERON:0001948,1.05e-10,5;UBERON:0002315,1.05e-10,5;UBERON:0000483,1.72e-09,174;UBERON:0000119,2.80e-09,176;UBERON:0002021,1.19e-08,10;UBERON:0000411,1.19e-08,10;UBERON:0001950,1.19e-08,10;UBERON:0002950,4.22e-08,4;UBERON:0001891,4.22e-08,4;UBERON:0009616,4.22e-08,4;UBERON:0010286,4.22e-08,4;UBERON:0002257,4.70e-07,3|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.90149421051854,0,0,0,0,0,0.599200221036809,0.768436610643109,3.7328260431052,3.51015439662396,3.36519938162211,2.85650984403804,1.54607978666129,1.46988959057945,0.862609239164127,1.83843757322004,0,1.78762273319263,0.614426133024974,1.71452174049252,1.46380229763855,1.04182674111352,1.67509799400829,1.68828783009504,1.5279824777681,1.76777151284201,1.85083185038834,2.23679334990361,0.151452386666368,0.377857800533928,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0.520455980298408,0.913396434936424,0.461230994512117,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.3481157546434,3.20250421973039,0.753926112677186,1.56441888173049,1.02286182932132,0.41557608911912,1.29793010454206,0,0,0,0.210441855886474,0,0.229902104433473,0,0,0.272145996605311,0,0.187403449119458,1.29351685369508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0,0,0,1.47202963994889,2.57261530948211,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:381270 | |||
|HGNC= | |||
|MCL_coexpression_id=1411 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80TE3 | |||
|association_with_transcript=-54bp_to_ENSMUST00000047786_5end | |||
|cluster_id=chr1:72583558..72583573,- | |||
|description=CAGE_peak_5_at_March4_5end | |||
|id=chr1:72583558..72583573,- | |||
|ontology_enrichment_celltype=CL:0000540!6.65e-20!33;CL:0000047!6.65e-20!33;CL:0000031!6.65e-20!33;CL:0000404!6.65e-20!33;CL:0000117!9.49e-18!23;CL:0000337!9.49e-18!23;CL:0002319!2.02e-16!43;CL:0000393!9.11e-16!39;CL:0000211!9.11e-16!39;CL:0000221!9.72e-16!44;CL:0000133!9.72e-16!44;CL:0000055!5.62e-13!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.67e-32,23;CL:0000337,4.67e-32,23;CL:0000540,2.20e-30,33;CL:0000047,2.20e-30,33;CL:0000031,2.20e-30,33;CL:0000404,2.20e-30,33;CL:0000393,1.01e-24,39;CL:0000211,1.01e-24,39;CL:0002319,7.92e-22,43;CL:0000221,3.46e-21,44;CL:0000133,3.46e-21,44;CL:0002321,5.15e-11,70;CL:0002609,2.87e-09,6;CL:0000723,3.99e-07,91;CL:0000048,3.99e-07,91;CL:0002612,4.70e-07,3;CL:0000120,5.93e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.25e-38!75;UBERON:0001016!3.25e-38!75;UBERON:0001017!1.36e-37!73;UBERON:0005743!1.36e-37!73;UBERON:0002346!1.72e-31!71;UBERON:0003075!1.72e-31!71;UBERON:0007284!1.72e-31!71;UBERON:0001049!8.78e-31!52;UBERON:0005068!8.78e-31!52;UBERON:0006241!8.78e-31!52;UBERON:0007135!8.78e-31!52;UBERON:0004121!1.28e-30!102;UBERON:0000924!1.28e-30!102;UBERON:0006601!1.28e-30!102;UBERON:0000955!2.33e-26!50;UBERON:0006238!2.33e-26!50;UBERON:0002616!8.56e-26!49;UBERON:0003080!1.48e-24!40;UBERON:0002020!7.06e-24!34;UBERON:0002780!8.67e-24!39;UBERON:0001890!8.67e-24!39;UBERON:0006240!8.67e-24!39;UBERON:0000033!3.75e-23!63;UBERON:0003056!1.39e-22!49;UBERON:0002791!2.11e-19!29;UBERON:0003528!2.11e-19!29;UBERON:0001893!2.11e-19!29;UBERON:0000956!2.69e-13!21;UBERON:0001869!2.69e-13!21;UBERON:0000203!2.69e-13!21;UBERON:0007811!5.95e-12!86;UBERON:0000153!4.78e-10!94;UBERON:0002619!9.12e-10!17;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0002420!2.36e-07!8;UBERON:0007245!2.36e-07!8;UBERON:0010009!2.36e-07!8;UBERON:0010011!2.36e-07!8;UBERON:0000454!2.36e-07!8;UBERON:0000025!2.63e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.79e-47,73;UBERON:0001016,5.90e-46,75;UBERON:0001049,2.97e-45,52;UBERON:0005068,2.97e-45,52;UBERON:0006241,2.97e-45,52;UBERON:0007135,2.97e-45,52;UBERON:0000073,2.32e-43,54;UBERON:0002346,1.04e-41,64;UBERON:0003075,1.04e-41,64;UBERON:0007284,1.04e-41,64;UBERON:0002020,3.08e-38,34;UBERON:0004121,4.15e-36,95;UBERON:0000924,4.15e-36,95;UBERON:0006601,4.15e-36,95;UBERON:0010371,1.95e-35,73;UBERON:0002616,1.72e-34,46;UBERON:0000955,1.37e-33,47;UBERON:0006238,1.37e-33,47;UBERON:0003080,4.17e-33,40;UBERON:0002780,1.38e-31,39;UBERON:0001890,1.38e-31,39;UBERON:0006240,1.38e-31,39;UBERON:0003528,5.13e-29,29;UBERON:0002791,5.13e-29,29;UBERON:0001893,5.13e-29,29;UBERON:0003056,9.69e-28,49;UBERON:0010314,3.25e-26,92;UBERON:0000956,8.26e-19,21;UBERON:0001869,8.26e-19,21;UBERON:0000203,8.26e-19,21;UBERON:0000025,8.04e-16,114;UBERON:0004111,3.33e-14,122;UBERON:0002240,2.59e-12,6;UBERON:0005174,2.59e-12,6;UBERON:0001137,2.59e-12,6;UBERON:0002619,6.08e-12,17;UBERON:0011216,8.23e-12,194;UBERON:0003076,8.43e-12,12;UBERON:0003057,8.43e-12,12;UBERON:0002420,2.13e-11,8;UBERON:0007245,2.13e-11,8;UBERON:0010009,2.13e-11,8;UBERON:0010011,2.13e-11,8;UBERON:0000454,2.13e-11,8;UBERON:0001948,1.05e-10,5;UBERON:0002315,1.05e-10,5;UBERON:0000483,1.72e-09,174;UBERON:0000119,2.80e-09,176;UBERON:0002021,1.19e-08,10;UBERON:0000411,1.19e-08,10;UBERON:0001950,1.19e-08,10;UBERON:0002950,4.22e-08,4;UBERON:0001891,4.22e-08,4;UBERON:0009616,4.22e-08,4;UBERON:0010286,4.22e-08,4;UBERON:0002257,4.70e-07,3 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.90149421051854,0,0,0,0,0,0.599200221036809,0.768436610643109,3.7328260431052,3.51015439662396,3.36519938162211,2.85650984403804,1.54607978666129,1.46988959057945,0.862609239164127,1.83843757322004,0,1.78762273319263,0.614426133024974,1.71452174049252,1.46380229763855,1.04182674111352,1.67509799400829,1.68828783009504,1.5279824777681,1.76777151284201,1.85083185038834,2.23679334990361,0.151452386666368,0.377857800533928,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0.520455980298408,0.913396434936424,0.461230994512117,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.3481157546434,3.20250421973039,0.753926112677186,1.56441888173049,1.02286182932132,0.41557608911912,1.29793010454206,0,0,0,0.210441855886474,0,0.229902104433473,0,0,0.272145996605311,0,0.187403449119458,1.29351685369508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0,0,0,1.47202963994889,2.57261530948211,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0.345369963731791,0,0,0,0,0,0.642202359951168,1.28932855251423,0,0,0.631016438832513,1.17131623288992,1.29254038639679,0,0.222798674082394,0,0.404810701674894,1.16902343164525,2.37172666767914,0.642642632843614,0,0,0,0.164970122972535,0,0.242780636154981,0.302323556964751,0,0,0.614870295887855,0,0,0,0,0,0,3.06395645178409,0.18006109403131,0,0.643011105094777,1.06404140185364,1.24858172321449,1.81003922662333,0.608929898229199,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0.36630324853453,0,0,1.12950368523413,2.30162618253588,2.29158205375759,1.03111909406213,1.37016503954128,0.755393897389701,2.02506750069542,1.35096360967266,0.906284817968409,0.51776031175182,0,0.798049746802062,0,0.729320151204882,0.209613162627982,0.551530525350042,0.44449345560323,0.206035057238894,0,0,0.50695859978048,0.754505365544305,0.187283014939765,0.256100609619477,0.402048282689293,0.476293691283074,0.115884325944855,0.38581844092741,0.824171801606613,0.294397840268795,0.342869252385415,0.532427418478012,0.238436189947321,0.145346416632329,0.564656282491984,0.592302255241736,0.365855945745545,0.263069711437843,0.407412341537585,0.561142271657738,0.593175090620871,0.0985044823755635,0.409231043169689,0.154936841185966,0,0.749431733813838,0.701794825336225,0.644613162144895,0,0.220591419119515,0 | |||
|short_description=p5@March4 | |||
}} |
Revision as of 23:08, 5 August 2015
Short description: | p5@March4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_March4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1411 |
Association with transcript: | -54bp_to_ENSMUST00000047786_5end |
EntrezGene: | 381270 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.67e-32 | 23 |
neuroblast (sensu Vertebrata) | 4.67e-32 | 23 |
neuron | 2.20e-30 | 33 |
neuronal stem cell | 2.20e-30 | 33 |
neuroblast | 2.20e-30 | 33 |
electrically signaling cell | 2.20e-30 | 33 |
electrically responsive cell | 1.01e-24 | 39 |
electrically active cell | 1.01e-24 | 39 |
neural cell | 7.92e-22 | 43 |
ectodermal cell | 3.46e-21 | 44 |
neurectodermal cell | 3.46e-21 | 44 |
embryonic cell | 5.15e-11 | 70 |
neuron of cerebral cortex | 2.87e-09 | 6 |
somatic stem cell | 3.99e-07 | 91 |
multi fate stem cell | 3.99e-07 | 91 |
neuron of the ventral spinal cord | 4.70e-07 | 3 |
granule cell | 5.93e-07 | 3 |