FFCP PHASE1:Mm9::chr11:16157637..16157652,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=211739|HGNC=|MCL_coexpression_id=705|UniProt=Q8R0A6|association_with_transcript=-74bp_to_ENSMUST00000093308,ENSMUST00000109645,NM_145967,uc007ibk.2_5end|description=CAGE_peak_4_at_Vstm2a_5end|id=chr11:16157637..16157652,+|ontology_enrichment_celltype=CL:0000117!4.35e-15!23;CL:0000337!4.35e-15!23;CL:0000540!2.95e-10!33;CL:0000047!2.95e-10!33;CL:0000031!2.95e-10!33;CL:0000404!2.95e-10!33;CL:0002319!1.46e-09!43;CL:0000221!3.85e-09!44;CL:0000133!3.85e-09!44;CL:0000393!1.67e-07!39;CL:0000211!1.67e-07!39;CL:0000055!5.08e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.46e-21,23;CL:0000337,6.46e-21,23;CL:0000540,1.97e-13,33;CL:0000047,1.97e-13,33;CL:0000031,1.97e-13,33;CL:0000404,1.97e-13,33;CL:0000393,8.49e-11,39;CL:0000211,8.49e-11,39;CL:0002319,1.86e-09,43;CL:0000221,3.69e-09,44;CL:0000133,3.69e-09,44;CL:0002612,5.34e-08,3;CL:0002614,3.96e-07,3;CL:0002608,5.06e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.26e-27!34;UBERON:0001049!1.19e-26!52;UBERON:0005068!1.19e-26!52;UBERON:0006241!1.19e-26!52;UBERON:0007135!1.19e-26!52;UBERON:0000073!2.19e-25!75;UBERON:0001016!2.19e-25!75;UBERON:0001017!8.35e-25!73;UBERON:0005743!8.35e-25!73;UBERON:0000955!7.35e-23!50;UBERON:0006238!7.35e-23!50;UBERON:0003080!1.40e-22!40;UBERON:0003056!1.54e-22!49;UBERON:0002346!2.22e-22!71;UBERON:0003075!2.22e-22!71;UBERON:0007284!2.22e-22!71;UBERON:0002791!3.07e-22!29;UBERON:0003528!3.07e-22!29;UBERON:0001893!3.07e-22!29;UBERON:0000033!4.95e-22!63;UBERON:0002616!6.85e-22!49;UBERON:0002780!1.34e-21!39;UBERON:0001890!1.34e-21!39;UBERON:0006240!1.34e-21!39;UBERON:0004121!4.78e-21!102;UBERON:0000924!4.78e-21!102;UBERON:0006601!4.78e-21!102;UBERON:0000956!1.30e-15!21;UBERON:0001869!1.30e-15!21;UBERON:0000203!1.30e-15!21;UBERON:0002619!2.40e-13!17;UBERON:0007811!4.13e-13!86;UBERON:0000153!1.17e-10!94;UBERON:0002021!1.42e-09!10;UBERON:0000411!1.42e-09!10;UBERON:0001950!1.42e-09!10;UBERON:0002420!8.87e-08!8;UBERON:0007245!8.87e-08!8;UBERON:0010009!8.87e-08!8;UBERON:0010011!8.87e-08!8;UBERON:0000454!8.87e-08!8;UBERON:0002240!4.53e-07!6;UBERON:0005174!4.53e-07!6;UBERON:0001137!4.53e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.49e-40,34;UBERON:0000073,2.61e-39,54;UBERON:0001049,1.58e-38,52;UBERON:0005068,1.58e-38,52;UBERON:0006241,1.58e-38,52;UBERON:0007135,1.58e-38,52;UBERON:0001017,1.33e-35,73;UBERON:0001016,1.91e-34,75;UBERON:0002346,6.24e-30,64;UBERON:0003075,6.24e-30,64;UBERON:0007284,6.24e-30,64;UBERON:0003528,9.64e-30,29;UBERON:0002791,9.64e-30,29;UBERON:0001893,9.64e-30,29;UBERON:0000955,2.88e-29,47;UBERON:0006238,2.88e-29,47;UBERON:0002616,2.00e-27,46;UBERON:0003080,2.84e-27,40;UBERON:0004121,1.53e-25,95;UBERON:0000924,1.53e-25,95;UBERON:0006601,1.53e-25,95;UBERON:0002780,1.94e-25,39;UBERON:0001890,1.94e-25,39;UBERON:0006240,1.94e-25,39;UBERON:0010371,2.46e-25,73;UBERON:0002619,5.15e-23,17;UBERON:0003056,3.51e-21,49;UBERON:0000956,4.51e-21,21;UBERON:0001869,4.51e-21,21;UBERON:0000203,4.51e-21,21;UBERON:0010314,1.39e-18,92;UBERON:0002021,2.21e-16,10;UBERON:0000411,2.21e-16,10;UBERON:0001950,2.21e-16,10;UBERON:0000025,1.15e-14,114;UBERON:0002240,5.34e-14,6;UBERON:0005174,5.34e-14,6;UBERON:0001137,5.34e-14,6;UBERON:0004111,3.27e-13,122;UBERON:0001948,6.05e-12,5;UBERON:0002315,6.05e-12,5;UBERON:0003076,2.88e-11,12;UBERON:0003057,2.88e-11,12;UBERON:0002420,1.23e-09,8;UBERON:0007245,1.23e-09,8;UBERON:0010009,1.23e-09,8;UBERON:0010011,1.23e-09,8;UBERON:0000454,1.23e-09,8;UBERON:0002950,2.86e-09,4;UBERON:0001891,2.86e-09,4;UBERON:0009616,2.86e-09,4;UBERON:0010286,2.86e-09,4;UBERON:0011216,2.07e-08,194;UBERON:0001954,3.21e-08,7;UBERON:0003022,3.21e-08,7;UBERON:0002421,3.21e-08,7;UBERON:0000349,3.21e-08,7;UBERON:0002600,3.21e-08,7;UBERON:0002257,5.34e-08,3;UBERON:0002038,3.96e-07,3;UBERON:0009663,3.96e-07,3;UBERON:0009661,3.96e-07,3;UBERON:0000125,3.96e-07,3;UBERON:0002308,3.96e-07,3;UBERON:0000483,4.94e-07,174;UBERON:0000119,7.21e-07,176|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0,0,0,0,0,0,0,0,1.61853168687678,1.05798195854407,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.414758449233911,0.270011876663381,0.420649922702764,1.99955689082663,1.98781686856452,1.34739879136449,1.15014565221884,2.75765635983006,0,1.27687338085188,2.15049146558741,1.05509030184155,0.731901148819277,0.52091337055676,1.3959149950069,1.68828783009504,1.98637722109853,4.12480019663135,3.27454865837937,1.67759501242771,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,2.54644086988199,2.28750301409313,5.6544458450789,3.12883776346098,3.58001640262463,1.66230435647648,1.94689515681309,1.12023300235348,0.124406970610093,0,0.210441855886474,0.130120442962704,0.229902104433473,0.360124259610698,0,0.0680364991513279,0,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46753866266731,4.83651678182637,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,1.52375192569864,0,0,0,0,0,0,0,0,0,0,0.395287777946524,2.89189184779626,0,0.534196811001766,0.488660878060728,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0.535106452806212,0.329098041204242,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0,2.22510362412612,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0.2604087696879,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,1.12950368523413,2.30162618253588,0.572895513439397,3.09335728218638,1.37016503954128,2.2661816921691,2.02506750069542,1.35096360967266,1.81256963593682,1.03552062350364,0.415149390336707,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0.824140228955577,1.60459604795908,0.505394423527595,0.25347929989024,0.754505365544305,0.37456602987953,0.512201219238954,0.516919220600519,0,0.463537303779422,1.15745532278223,0,0.588795680537589,0,0.887379030796687,0.238436189947321,0.436039249896986,0.0941093804153306,0.338458431566706,0,0.789209134313529,0,0,0.474540072496697,0.591026894253381,0.409231043169689,0.464810523557898,0.192906610981141,0.999242311751784,0,0.644613162144895,0,0,0|short_description=p4@Vstm2a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:211739 | |||
|HGNC= | |||
|MCL_coexpression_id=705 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8R0A6 | |||
|association_with_transcript=-74bp_to_ENSMUST00000093308,ENSMUST00000109645,NM_145967,uc007ibk.2_5end | |||
|cluster_id=chr11:16157637..16157652,+ | |||
|description=CAGE_peak_4_at_Vstm2a_5end | |||
|id=chr11:16157637..16157652,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.35e-15!23;CL:0000337!4.35e-15!23;CL:0000540!2.95e-10!33;CL:0000047!2.95e-10!33;CL:0000031!2.95e-10!33;CL:0000404!2.95e-10!33;CL:0002319!1.46e-09!43;CL:0000221!3.85e-09!44;CL:0000133!3.85e-09!44;CL:0000393!1.67e-07!39;CL:0000211!1.67e-07!39;CL:0000055!5.08e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.46e-21,23;CL:0000337,6.46e-21,23;CL:0000540,1.97e-13,33;CL:0000047,1.97e-13,33;CL:0000031,1.97e-13,33;CL:0000404,1.97e-13,33;CL:0000393,8.49e-11,39;CL:0000211,8.49e-11,39;CL:0002319,1.86e-09,43;CL:0000221,3.69e-09,44;CL:0000133,3.69e-09,44;CL:0002612,5.34e-08,3;CL:0002614,3.96e-07,3;CL:0002608,5.06e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.26e-27!34;UBERON:0001049!1.19e-26!52;UBERON:0005068!1.19e-26!52;UBERON:0006241!1.19e-26!52;UBERON:0007135!1.19e-26!52;UBERON:0000073!2.19e-25!75;UBERON:0001016!2.19e-25!75;UBERON:0001017!8.35e-25!73;UBERON:0005743!8.35e-25!73;UBERON:0000955!7.35e-23!50;UBERON:0006238!7.35e-23!50;UBERON:0003080!1.40e-22!40;UBERON:0003056!1.54e-22!49;UBERON:0002346!2.22e-22!71;UBERON:0003075!2.22e-22!71;UBERON:0007284!2.22e-22!71;UBERON:0002791!3.07e-22!29;UBERON:0003528!3.07e-22!29;UBERON:0001893!3.07e-22!29;UBERON:0000033!4.95e-22!63;UBERON:0002616!6.85e-22!49;UBERON:0002780!1.34e-21!39;UBERON:0001890!1.34e-21!39;UBERON:0006240!1.34e-21!39;UBERON:0004121!4.78e-21!102;UBERON:0000924!4.78e-21!102;UBERON:0006601!4.78e-21!102;UBERON:0000956!1.30e-15!21;UBERON:0001869!1.30e-15!21;UBERON:0000203!1.30e-15!21;UBERON:0002619!2.40e-13!17;UBERON:0007811!4.13e-13!86;UBERON:0000153!1.17e-10!94;UBERON:0002021!1.42e-09!10;UBERON:0000411!1.42e-09!10;UBERON:0001950!1.42e-09!10;UBERON:0002420!8.87e-08!8;UBERON:0007245!8.87e-08!8;UBERON:0010009!8.87e-08!8;UBERON:0010011!8.87e-08!8;UBERON:0000454!8.87e-08!8;UBERON:0002240!4.53e-07!6;UBERON:0005174!4.53e-07!6;UBERON:0001137!4.53e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.49e-40,34;UBERON:0000073,2.61e-39,54;UBERON:0001049,1.58e-38,52;UBERON:0005068,1.58e-38,52;UBERON:0006241,1.58e-38,52;UBERON:0007135,1.58e-38,52;UBERON:0001017,1.33e-35,73;UBERON:0001016,1.91e-34,75;UBERON:0002346,6.24e-30,64;UBERON:0003075,6.24e-30,64;UBERON:0007284,6.24e-30,64;UBERON:0003528,9.64e-30,29;UBERON:0002791,9.64e-30,29;UBERON:0001893,9.64e-30,29;UBERON:0000955,2.88e-29,47;UBERON:0006238,2.88e-29,47;UBERON:0002616,2.00e-27,46;UBERON:0003080,2.84e-27,40;UBERON:0004121,1.53e-25,95;UBERON:0000924,1.53e-25,95;UBERON:0006601,1.53e-25,95;UBERON:0002780,1.94e-25,39;UBERON:0001890,1.94e-25,39;UBERON:0006240,1.94e-25,39;UBERON:0010371,2.46e-25,73;UBERON:0002619,5.15e-23,17;UBERON:0003056,3.51e-21,49;UBERON:0000956,4.51e-21,21;UBERON:0001869,4.51e-21,21;UBERON:0000203,4.51e-21,21;UBERON:0010314,1.39e-18,92;UBERON:0002021,2.21e-16,10;UBERON:0000411,2.21e-16,10;UBERON:0001950,2.21e-16,10;UBERON:0000025,1.15e-14,114;UBERON:0002240,5.34e-14,6;UBERON:0005174,5.34e-14,6;UBERON:0001137,5.34e-14,6;UBERON:0004111,3.27e-13,122;UBERON:0001948,6.05e-12,5;UBERON:0002315,6.05e-12,5;UBERON:0003076,2.88e-11,12;UBERON:0003057,2.88e-11,12;UBERON:0002420,1.23e-09,8;UBERON:0007245,1.23e-09,8;UBERON:0010009,1.23e-09,8;UBERON:0010011,1.23e-09,8;UBERON:0000454,1.23e-09,8;UBERON:0002950,2.86e-09,4;UBERON:0001891,2.86e-09,4;UBERON:0009616,2.86e-09,4;UBERON:0010286,2.86e-09,4;UBERON:0011216,2.07e-08,194;UBERON:0001954,3.21e-08,7;UBERON:0003022,3.21e-08,7;UBERON:0002421,3.21e-08,7;UBERON:0000349,3.21e-08,7;UBERON:0002600,3.21e-08,7;UBERON:0002257,5.34e-08,3;UBERON:0002038,3.96e-07,3;UBERON:0009663,3.96e-07,3;UBERON:0009661,3.96e-07,3;UBERON:0000125,3.96e-07,3;UBERON:0002308,3.96e-07,3;UBERON:0000483,4.94e-07,174;UBERON:0000119,7.21e-07,176 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0,0,0,0,0,0,0,0,1.61853168687678,1.05798195854407,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.414758449233911,0.270011876663381,0.420649922702764,1.99955689082663,1.98781686856452,1.34739879136449,1.15014565221884,2.75765635983006,0,1.27687338085188,2.15049146558741,1.05509030184155,0.731901148819277,0.52091337055676,1.3959149950069,1.68828783009504,1.98637722109853,4.12480019663135,3.27454865837937,1.67759501242771,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,2.54644086988199,2.28750301409313,5.6544458450789,3.12883776346098,3.58001640262463,1.66230435647648,1.94689515681309,1.12023300235348,0.124406970610093,0,0.210441855886474,0.130120442962704,0.229902104433473,0.360124259610698,0,0.0680364991513279,0,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46753866266731,4.83651678182637,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,1.52375192569864,0,0,0,0,0,0,0,0,0,0,0.395287777946524,2.89189184779626,0,0.534196811001766,0.488660878060728,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0.535106452806212,0.329098041204242,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0,2.22510362412612,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0.2604087696879,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,1.12950368523413,2.30162618253588,0.572895513439397,3.09335728218638,1.37016503954128,2.2661816921691,2.02506750069542,1.35096360967266,1.81256963593682,1.03552062350364,0.415149390336707,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0.824140228955577,1.60459604795908,0.505394423527595,0.25347929989024,0.754505365544305,0.37456602987953,0.512201219238954,0.516919220600519,0,0.463537303779422,1.15745532278223,0,0.588795680537589,0,0.887379030796687,0.238436189947321,0.436039249896986,0.0941093804153306,0.338458431566706,0,0.789209134313529,0,0,0.474540072496697,0.591026894253381,0.409231043169689,0.464810523557898,0.192906610981141,0.999242311751784,0,0.644613162144895,0,0,0 | |||
|short_description=p4@Vstm2a | |||
}} |
Revision as of 16:16, 5 August 2015
Short description: | p4@Vstm2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Vstm2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:705 |
Association with transcript: | -74bp_to_ENSMUST00000093308, ENSMUST00000109645, NM_145967, uc007ibk.2_5end |
EntrezGene: | 211739 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.46e-21 | 23 |
neuroblast (sensu Vertebrata) | 6.46e-21 | 23 |
neuron | 1.97e-13 | 33 |
neuronal stem cell | 1.97e-13 | 33 |
neuroblast | 1.97e-13 | 33 |
electrically signaling cell | 1.97e-13 | 33 |
electrically responsive cell | 8.49e-11 | 39 |
electrically active cell | 8.49e-11 | 39 |
neural cell | 1.86e-09 | 43 |
ectodermal cell | 3.69e-09 | 44 |
neurectodermal cell | 3.69e-09 | 44 |
neuron of the ventral spinal cord | 5.34e-08 | 3 |
neuron of the substantia nigra | 3.96e-07 | 3 |
hippocampal neuron | 5.06e-07 | 3 |