FFCP PHASE1:Mm9::chr13:109906367..109906396,+: Difference between revisions
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{{FFCP|EntrezGene=238871|HGNC=|MCL_coexpression_id=121|UniProt=|association_with_transcript=-33bp_to_ENSMUST00000129374_5end|description=CAGE_peak_20_at_Pde4d_5end|id=chr13:109906367..109906396,+|ontology_enrichment_celltype=CL:0000540!1.93e-12!33;CL:0000047!1.93e-12!33;CL:0000031!1.93e-12!33;CL:0000404!1.93e-12!33;CL:0000117!2.53e-11!23;CL:0000337!2.53e-11!23;CL:0002319!4.84e-10!43;CL:0000221!1.36e-09!44;CL:0000133!1.36e-09!44;CL:0000393!3.91e-09!39;CL:0000211!3.91e-09!39;CL:0000055!2.46e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.19e-21,23;CL:0000337,1.19e-21,23;CL:0000540,4.64e-14,33;CL:0000047,4.64e-14,33;CL:0000031,4.64e-14,33;CL:0000404,4.64e-14,33;CL:0002319,1.62e-11,43;CL:0000393,2.20e-11,39;CL:0000211,2.20e-11,39;CL:0000221,3.57e-11,44;CL:0000133,3.57e-11,44;CL:0002614,7.80e-09,3;CL:0002610,1.25e-08,3;CL:0002612,3.99e-08,3;CL:0000120,7.83e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.79e-27!73;UBERON:0005743!5.79e-27!73;UBERON:0000073!1.13e-25!75;UBERON:0001016!1.13e-25!75;UBERON:0002346!4.07e-23!71;UBERON:0003075!4.07e-23!71;UBERON:0007284!4.07e-23!71;UBERON:0004121!7.48e-22!102;UBERON:0000924!7.48e-22!102;UBERON:0006601!7.48e-22!102;UBERON:0001049!1.24e-20!52;UBERON:0005068!1.24e-20!52;UBERON:0006241!1.24e-20!52;UBERON:0007135!1.24e-20!52;UBERON:0000955!3.93e-19!50;UBERON:0006238!3.93e-19!50;UBERON:0002616!2.86e-18!49;UBERON:0000033!2.52e-17!63;UBERON:0002020!3.45e-15!34;UBERON:0003056!6.86e-13!49;UBERON:0003080!2.69e-12!40;UBERON:0002780!1.74e-11!39;UBERON:0001890!1.74e-11!39;UBERON:0006240!1.74e-11!39;UBERON:0002791!2.76e-11!29;UBERON:0003528!2.76e-11!29;UBERON:0001893!2.76e-11!29;UBERON:0003076!6.40e-10!12;UBERON:0003057!6.40e-10!12;UBERON:0007811!1.13e-08!86;UBERON:0002619!1.46e-07!17;UBERON:0000956!3.28e-07!21;UBERON:0001869!3.28e-07!21;UBERON:0000203!3.28e-07!21;UBERON:0002298!3.65e-07!6;UBERON:0002021!4.63e-07!10;UBERON:0000411!4.63e-07!10;UBERON:0001950!4.63e-07!10;UBERON:0000153!8.13e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.54e-37,54;UBERON:0001017,6.85e-37,73;UBERON:0001016,9.89e-36,75;UBERON:0001049,6.16e-33,52;UBERON:0005068,6.16e-33,52;UBERON:0006241,6.16e-33,52;UBERON:0007135,6.16e-33,52;UBERON:0004121,8.25e-27,95;UBERON:0000924,8.25e-27,95;UBERON:0006601,8.25e-27,95;UBERON:0002346,1.28e-25,64;UBERON:0003075,1.28e-25,64;UBERON:0007284,1.28e-25,64;UBERON:0003076,1.58e-24,12;UBERON:0003057,1.58e-24,12;UBERON:0000955,5.62e-24,47;UBERON:0006238,5.62e-24,47;UBERON:0002616,3.35e-22,46;UBERON:0002020,5.15e-22,34;UBERON:0010371,1.04e-21,73;UBERON:0010314,5.86e-16,92;UBERON:0002240,1.03e-14,6;UBERON:0005174,1.03e-14,6;UBERON:0001137,1.03e-14,6;UBERON:0003080,2.23e-14,40;UBERON:0003528,1.21e-13,29;UBERON:0002791,1.21e-13,29;UBERON:0001893,1.21e-13,29;UBERON:0002780,8.23e-13,39;UBERON:0001890,8.23e-13,39;UBERON:0006240,8.23e-13,39;UBERON:0001948,2.20e-12,5;UBERON:0002315,2.20e-12,5;UBERON:0000025,1.08e-11,114;UBERON:0002950,2.03e-11,4;UBERON:0001891,2.03e-11,4;UBERON:0009616,2.03e-11,4;UBERON:0010286,2.03e-11,4;UBERON:0004733,2.08e-11,6;UBERON:0004732,2.08e-11,6;UBERON:0002028,2.08e-11,6;UBERON:0007277,2.08e-11,6;UBERON:0003056,4.89e-11,49;UBERON:0002021,9.60e-11,10;UBERON:0000411,9.60e-11,10;UBERON:0001950,9.60e-11,10;UBERON:0004111,1.59e-10,122;UBERON:0011216,1.27e-09,194;UBERON:0002038,7.80e-09,3;UBERON:0009663,7.80e-09,3;UBERON:0009661,7.80e-09,3;UBERON:0000125,7.80e-09,3;UBERON:0002308,7.80e-09,3;UBERON:0004684,1.25e-08,3;UBERON:0002275,1.25e-08,3;UBERON:0002257,3.99e-08,3;UBERON:0002619,7.26e-08,17;UBERON:0000956,7.81e-08,21;UBERON:0001869,7.81e-08,21;UBERON:0000203,7.81e-08,21;UBERON:0002420,1.01e-07,8;UBERON:0007245,1.01e-07,8;UBERON:0010009,1.01e-07,8;UBERON:0010011,1.01e-07,8;UBERON:0000454,1.01e-07,8;UBERON:0002037,9.62e-07,4;UBERON:0002680,9.62e-07,4;UBERON:0001895,9.62e-07,4;UBERON:0010092,9.62e-07,4;UBERON:0006215,9.62e-07,4|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0.219686182734472,0,0.279972843250725,0,0,0,0,0,0,0,2.02316460859598,1.5869729378161,1.90149421051854,0,0,0,0,0,0,0,0,0.135005938331691,0,3.42781181284564,1.10434270475807,0.244981598429908,0.0958454710182364,0,4.40463523997555,2.55374676170375,2.15049146558741,1.31886287730194,0.914876436024097,0,1.95428099300967,6.19038871034848,3.51435969886663,1.76777151284201,2.27794689278565,2.23679334990361,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,11.7112318804619,10.2628886338593,0,0,0,0,4.94309110035915,1.37250180845588,0.251308704225729,2.25971616249959,1.79000820131231,4.57133698031032,2.10913641988085,0,0,0,0.420883711772948,0,0,0,0,0.272145996605311,0.640568601424249,0.749613796477831,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:238871 | |||
|HGNC= | |||
|MCL_coexpression_id=121 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_ENSMUST00000129374_5end | |||
|cluster_id=chr13:109906367..109906396,+ | |||
|description=CAGE_peak_20_at_Pde4d_5end | |||
|id=chr13:109906367..109906396,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.93e-12!33;CL:0000047!1.93e-12!33;CL:0000031!1.93e-12!33;CL:0000404!1.93e-12!33;CL:0000117!2.53e-11!23;CL:0000337!2.53e-11!23;CL:0002319!4.84e-10!43;CL:0000221!1.36e-09!44;CL:0000133!1.36e-09!44;CL:0000393!3.91e-09!39;CL:0000211!3.91e-09!39;CL:0000055!2.46e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.19e-21,23;CL:0000337,1.19e-21,23;CL:0000540,4.64e-14,33;CL:0000047,4.64e-14,33;CL:0000031,4.64e-14,33;CL:0000404,4.64e-14,33;CL:0002319,1.62e-11,43;CL:0000393,2.20e-11,39;CL:0000211,2.20e-11,39;CL:0000221,3.57e-11,44;CL:0000133,3.57e-11,44;CL:0002614,7.80e-09,3;CL:0002610,1.25e-08,3;CL:0002612,3.99e-08,3;CL:0000120,7.83e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.79e-27!73;UBERON:0005743!5.79e-27!73;UBERON:0000073!1.13e-25!75;UBERON:0001016!1.13e-25!75;UBERON:0002346!4.07e-23!71;UBERON:0003075!4.07e-23!71;UBERON:0007284!4.07e-23!71;UBERON:0004121!7.48e-22!102;UBERON:0000924!7.48e-22!102;UBERON:0006601!7.48e-22!102;UBERON:0001049!1.24e-20!52;UBERON:0005068!1.24e-20!52;UBERON:0006241!1.24e-20!52;UBERON:0007135!1.24e-20!52;UBERON:0000955!3.93e-19!50;UBERON:0006238!3.93e-19!50;UBERON:0002616!2.86e-18!49;UBERON:0000033!2.52e-17!63;UBERON:0002020!3.45e-15!34;UBERON:0003056!6.86e-13!49;UBERON:0003080!2.69e-12!40;UBERON:0002780!1.74e-11!39;UBERON:0001890!1.74e-11!39;UBERON:0006240!1.74e-11!39;UBERON:0002791!2.76e-11!29;UBERON:0003528!2.76e-11!29;UBERON:0001893!2.76e-11!29;UBERON:0003076!6.40e-10!12;UBERON:0003057!6.40e-10!12;UBERON:0007811!1.13e-08!86;UBERON:0002619!1.46e-07!17;UBERON:0000956!3.28e-07!21;UBERON:0001869!3.28e-07!21;UBERON:0000203!3.28e-07!21;UBERON:0002298!3.65e-07!6;UBERON:0002021!4.63e-07!10;UBERON:0000411!4.63e-07!10;UBERON:0001950!4.63e-07!10;UBERON:0000153!8.13e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.54e-37,54;UBERON:0001017,6.85e-37,73;UBERON:0001016,9.89e-36,75;UBERON:0001049,6.16e-33,52;UBERON:0005068,6.16e-33,52;UBERON:0006241,6.16e-33,52;UBERON:0007135,6.16e-33,52;UBERON:0004121,8.25e-27,95;UBERON:0000924,8.25e-27,95;UBERON:0006601,8.25e-27,95;UBERON:0002346,1.28e-25,64;UBERON:0003075,1.28e-25,64;UBERON:0007284,1.28e-25,64;UBERON:0003076,1.58e-24,12;UBERON:0003057,1.58e-24,12;UBERON:0000955,5.62e-24,47;UBERON:0006238,5.62e-24,47;UBERON:0002616,3.35e-22,46;UBERON:0002020,5.15e-22,34;UBERON:0010371,1.04e-21,73;UBERON:0010314,5.86e-16,92;UBERON:0002240,1.03e-14,6;UBERON:0005174,1.03e-14,6;UBERON:0001137,1.03e-14,6;UBERON:0003080,2.23e-14,40;UBERON:0003528,1.21e-13,29;UBERON:0002791,1.21e-13,29;UBERON:0001893,1.21e-13,29;UBERON:0002780,8.23e-13,39;UBERON:0001890,8.23e-13,39;UBERON:0006240,8.23e-13,39;UBERON:0001948,2.20e-12,5;UBERON:0002315,2.20e-12,5;UBERON:0000025,1.08e-11,114;UBERON:0002950,2.03e-11,4;UBERON:0001891,2.03e-11,4;UBERON:0009616,2.03e-11,4;UBERON:0010286,2.03e-11,4;UBERON:0004733,2.08e-11,6;UBERON:0004732,2.08e-11,6;UBERON:0002028,2.08e-11,6;UBERON:0007277,2.08e-11,6;UBERON:0003056,4.89e-11,49;UBERON:0002021,9.60e-11,10;UBERON:0000411,9.60e-11,10;UBERON:0001950,9.60e-11,10;UBERON:0004111,1.59e-10,122;UBERON:0011216,1.27e-09,194;UBERON:0002038,7.80e-09,3;UBERON:0009663,7.80e-09,3;UBERON:0009661,7.80e-09,3;UBERON:0000125,7.80e-09,3;UBERON:0002308,7.80e-09,3;UBERON:0004684,1.25e-08,3;UBERON:0002275,1.25e-08,3;UBERON:0002257,3.99e-08,3;UBERON:0002619,7.26e-08,17;UBERON:0000956,7.81e-08,21;UBERON:0001869,7.81e-08,21;UBERON:0000203,7.81e-08,21;UBERON:0002420,1.01e-07,8;UBERON:0007245,1.01e-07,8;UBERON:0010009,1.01e-07,8;UBERON:0010011,1.01e-07,8;UBERON:0000454,1.01e-07,8;UBERON:0002037,9.62e-07,4;UBERON:0002680,9.62e-07,4;UBERON:0001895,9.62e-07,4;UBERON:0010092,9.62e-07,4;UBERON:0006215,9.62e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0.219686182734472,0,0.279972843250725,0,0,0,0,0,0,0,2.02316460859598,1.5869729378161,1.90149421051854,0,0,0,0,0,0,0,0,0.135005938331691,0,3.42781181284564,1.10434270475807,0.244981598429908,0.0958454710182364,0,4.40463523997555,2.55374676170375,2.15049146558741,1.31886287730194,0.914876436024097,0,1.95428099300967,6.19038871034848,3.51435969886663,1.76777151284201,2.27794689278565,2.23679334990361,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,11.7112318804619,10.2628886338593,0,0,0,0,4.94309110035915,1.37250180845588,0.251308704225729,2.25971616249959,1.79000820131231,4.57133698031032,2.10913641988085,0,0,0,0.420883711772948,0,0,0,0,0.272145996605311,0.640568601424249,0.749613796477831,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.94405927989778,0.411618449517138,0,0,0,0,0,0,0,0.190225626112559,0.474529061544512,0,0.502670417600539,0,0.19496408711912,0,0,0,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0.31399745568275,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21101179975584,3.28192722458169,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0,0.222798674082394,0,0.404810701674894,0.292255857911312,0.790575555893047,2.89189184779626,0,0,0,0,0,0,0,0.188605079755898,0,0.614870295887855,0.516856586336442,0.727067458955011,0,0.632073515871632,0,0,0,0.18006109403131,0,0,0.177340233642274,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,2.78137953015765,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.165306911450672,0.26175594198403,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,1.14579102687879,1.3748254587495,0,0.755393897389701,1.35004500046361,1.35096360967266,2.26571204492102,3.10656187051092,0.103787347584177,0.399024873401031,0.170733605754134,0.729320151204882,0.209613162627982,0.183843508450014,0.222246727801615,0.206035057238894,0,0.505394423527595,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.402048282689293,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0.342869252385415,0.354951612318675,0,0.436039249896986,0.376437521661322,0.338458431566706,0.182927972872773,0,0.543216455383447,0,0,0.394017929502254,0,0.619747364743864,0,0.499621155875892,0.467863216890817,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p20@Pde4d | |||
}} |
Revision as of 14:13, 5 August 2015
Short description: | p20@Pde4d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_Pde4d_5end |
Coexpression cluster: | MCL_coexpression_mm9:121 |
Association with transcript: | -33bp_to_ENSMUST00000129374_5end |
EntrezGene: | 238871 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.19e-21 | 23 |
neuroblast (sensu Vertebrata) | 1.19e-21 | 23 |
neuron | 4.64e-14 | 33 |
neuronal stem cell | 4.64e-14 | 33 |
neuroblast | 4.64e-14 | 33 |
electrically signaling cell | 4.64e-14 | 33 |
neural cell | 1.62e-11 | 43 |
electrically responsive cell | 2.20e-11 | 39 |
electrically active cell | 2.20e-11 | 39 |
ectodermal cell | 3.57e-11 | 44 |
neurectodermal cell | 3.57e-11 | 44 |
neuron of the substantia nigra | 7.80e-09 | 3 |
raphe nuclei neuron | 1.25e-08 | 3 |
neuron of the ventral spinal cord | 3.99e-08 | 3 |
granule cell | 7.83e-08 | 3 |