FFCP PHASE1:Mm9::chr1:195129567..195129580,+: Difference between revisions
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{{FFCP|EntrezGene=16780|HGNC=|MCL_coexpression_id=58|UniProt=F6YGE5|association_with_transcript=-121bp_to_ENSMUST00000085541_5end|description=CAGE_peak_8_at_Lamb3_5end|id=chr1:195129567..195129580,+|ontology_enrichment_celltype=CL:0000239!4.48e-16!6;CL:0000677!4.48e-16!6;CL:0000212!4.48e-16!6;CL:0000584!4.48e-16!6;CL:0000075!9.62e-14!7;CL:0000473!2.10e-12!3;CL:0000627!2.10e-12!3;CL:0000682!2.10e-12!3;CL:0000066!3.91e-11!25;CL:0002563!1.26e-10!9;CL:0002251!1.26e-10!9;CL:0002076!9.87e-09!15|ontology_enrichment_celltype_v019_2=CL:0000682,2.18e-33,3;CL:0000239,1.03e-29,6;CL:0000677,1.03e-29,6;CL:0000584,1.03e-29,6;CL:0000075,1.48e-25,7;CL:0000066,1.57e-21,25;CL:0002563,5.25e-20,9;CL:0002251,5.25e-20,9;CL:0000473,8.94e-15,7;CL:0002076,3.35e-12,15;CL:0000223,2.97e-09,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.95e-23!15;UBERON:0001242!1.75e-17!13;UBERON:0000060!1.75e-17!13;UBERON:0001262!1.75e-17!13;UBERON:0004786!1.75e-17!13;UBERON:0004923!5.36e-14!24;UBERON:0003350!1.26e-10!9;UBERON:0004808!1.26e-10!9;UBERON:0001277!1.26e-10!9;UBERON:0000485!1.22e-08!11;UBERON:0001962!2.12e-08!2;UBERON:0001961!2.12e-08!2;UBERON:0001744!2.12e-08!2;UBERON:0000064!2.38e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0003350,5.25e-20,9;UBERON:0004808,5.25e-20,9;UBERON:0001277,5.25e-20,9;UBERON:0000344,1.92e-18,15;UBERON:0000485,1.83e-16,11;UBERON:0001242,5.23e-14,13;UBERON:0001262,5.23e-14,13;UBERON:0004786,5.23e-14,13;UBERON:0003199,7.11e-12,1;UBERON:0004923,1.24e-11,24|phase1_expression=0,8.72438519098403,3.18499467572675,0.30246421130683,0,1.51091344720701,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.319984845586813,1.14704640533585,4.01962374880514,1.29228598847722,3.01659725760245,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0.120195449519969,0.147689527174577,0.100966449948148,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p8@Lamb3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16780 | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F6YGE5 | |||
|association_with_transcript=-121bp_to_ENSMUST00000085541_5end | |||
|cluster_id=chr1:195129567..195129580,+ | |||
|description=CAGE_peak_8_at_Lamb3_5end | |||
|id=chr1:195129567..195129580,+ | |||
|ontology_enrichment_celltype=CL:0000239!4.48e-16!6;CL:0000677!4.48e-16!6;CL:0000212!4.48e-16!6;CL:0000584!4.48e-16!6;CL:0000075!9.62e-14!7;CL:0000473!2.10e-12!3;CL:0000627!2.10e-12!3;CL:0000682!2.10e-12!3;CL:0000066!3.91e-11!25;CL:0002563!1.26e-10!9;CL:0002251!1.26e-10!9;CL:0002076!9.87e-09!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.18e-33,3;CL:0000239,1.03e-29,6;CL:0000677,1.03e-29,6;CL:0000584,1.03e-29,6;CL:0000075,1.48e-25,7;CL:0000066,1.57e-21,25;CL:0002563,5.25e-20,9;CL:0002251,5.25e-20,9;CL:0000473,8.94e-15,7;CL:0002076,3.35e-12,15;CL:0000223,2.97e-09,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.95e-23!15;UBERON:0001242!1.75e-17!13;UBERON:0000060!1.75e-17!13;UBERON:0001262!1.75e-17!13;UBERON:0004786!1.75e-17!13;UBERON:0004923!5.36e-14!24;UBERON:0003350!1.26e-10!9;UBERON:0004808!1.26e-10!9;UBERON:0001277!1.26e-10!9;UBERON:0000485!1.22e-08!11;UBERON:0001962!2.12e-08!2;UBERON:0001961!2.12e-08!2;UBERON:0001744!2.12e-08!2;UBERON:0000064!2.38e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,5.25e-20,9;UBERON:0004808,5.25e-20,9;UBERON:0001277,5.25e-20,9;UBERON:0000344,1.92e-18,15;UBERON:0000485,1.83e-16,11;UBERON:0001242,5.23e-14,13;UBERON:0001262,5.23e-14,13;UBERON:0004786,5.23e-14,13;UBERON:0003199,7.11e-12,1;UBERON:0004923,1.24e-11,24 | |||
|phase1_expression=0,8.72438519098403,3.18499467572675,0.30246421130683,0,1.51091344720701,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.319984845586813,1.14704640533585,4.01962374880514,1.29228598847722,3.01659725760245,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0.120195449519969,0.147689527174577,0.100966449948148,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@Lamb3 | |||
}} |
Revision as of 12:51, 5 August 2015
Short description: | p8@Lamb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Lamb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | -121bp_to_ENSMUST00000085541_5end |
EntrezGene: | 16780 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.18e-33 | 3 |
brush border epithelial cell | 1.03e-29 | 6 |
gut absorptive cell | 1.03e-29 | 6 |
enterocyte | 1.03e-29 | 6 |
columnar/cuboidal epithelial cell | 1.48e-25 | 7 |
epithelial cell | 1.57e-21 | 25 |
intestinal epithelial cell | 5.25e-20 | 9 |
epithelial cell of alimentary canal | 5.25e-20 | 9 |
defensive cell | 8.94e-15 | 7 |
endo-epithelial cell | 3.35e-12 | 15 |
endodermal cell | 2.97e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 5.25e-20 | 9 |
gastrointestinal system epithelium | 5.25e-20 | 9 |
intestinal epithelium | 5.25e-20 | 9 |
mucosa | 1.92e-18 | 15 |
simple columnar epithelium | 1.83e-16 | 11 |
intestinal mucosa | 5.23e-14 | 13 |
wall of intestine | 5.23e-14 | 13 |
gastrointestinal system mucosa | 5.23e-14 | 13 |
egg chamber | 7.11e-12 | 1 |
organ component layer | 1.24e-11 | 24 |