FFCP PHASE1:Mm9::chr2:51893525..51893540,+: Difference between revisions
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{{FFCP|EntrezGene=21930|HGNC=|MCL_coexpression_id=53|UniProt=O08859|association_with_transcript=0bp_to_ENSMUST00000065927_5end|description=CAGE_peak_3_at_Tnfaip6_5end|id=chr2:51893525..51893540,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002374,1.33e-07,1;CL:0000202,1.33e-07,1;CL:0000199,1.33e-07,1;CL:0000855,1.33e-07,1;CL:0000589,1.33e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.51e-11!63;UBERON:0002346!3.33e-10!71;UBERON:0003075!3.33e-10!71;UBERON:0007284!3.33e-10!71;UBERON:0000970!1.46e-09!9;UBERON:0000019!1.46e-09!9;UBERON:0000047!1.46e-09!9;UBERON:0004088!1.46e-09!9;UBERON:0002104!1.46e-09!9;UBERON:0001456!1.46e-09!9;UBERON:0003072!1.46e-09!9;UBERON:0003071!1.46e-09!9;UBERON:0004128!1.46e-09!9;UBERON:0003056!2.00e-09!49;UBERON:0000020!2.11e-09!12;UBERON:0001032!2.11e-09!12;UBERON:0004456!2.11e-09!12;UBERON:0005085!7.19e-09!13;UBERON:0001444!1.66e-08!11;UBERON:0001049!1.17e-07!52;UBERON:0005068!1.17e-07!52;UBERON:0006241!1.17e-07!52;UBERON:0007135!1.17e-07!52;UBERON:0004121!1.34e-07!102;UBERON:0000924!1.34e-07!102;UBERON:0006601!1.34e-07!102;UBERON:0002020!6.02e-07!34;UBERON:0000153!8.36e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000970,9.85e-35,9;UBERON:0000019,9.85e-35,9;UBERON:0000047,9.85e-35,9;UBERON:0010312,9.85e-35,9;UBERON:0004088,9.85e-35,9;UBERON:0002104,9.85e-35,9;UBERON:0001456,9.85e-35,9;UBERON:0003072,9.85e-35,9;UBERON:0004128,9.85e-35,9;UBERON:0003071,9.85e-35,9;UBERON:0000020,1.12e-33,12;UBERON:0001032,1.12e-33,12;UBERON:0004456,1.12e-33,12;UBERON:0000033,4.85e-31,13;UBERON:0005085,4.85e-31,13;UBERON:0001444,2.38e-28,11;UBERON:0010371,2.52e-13,73;UBERON:0002346,5.63e-13,64;UBERON:0003075,5.63e-13,64;UBERON:0007284,5.63e-13,64;UBERON:0003056,6.44e-12,49;UBERON:0000153,3.27e-11,43;UBERON:0007811,9.31e-11,36;UBERON:0010314,2.81e-10,92;UBERON:0004121,6.62e-10,95;UBERON:0000924,6.62e-10,95;UBERON:0006601,6.62e-10,95|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0,0.436050312760893,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0.856952953211411,0.883474163806454,0.489963196859816,0.287536413054709,0,0,0.127687338085188,0,0.131886287730194,0,0,0.279182999001381,0.56276261003168,0.30559649555362,0.589257170947335,0.284743361598206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,1.46612694769419,0,0,0,0,0.449371918214468,0.457500602818626,1.00523481690292,0.347648640384553,0,0.41557608911912,0.162241263067758,0.305518091550949,0,0,0.631325567659422,1.04096354370163,1.60931473103431,2.70093194708024,1.50704817835715,3.06164246180975,2.69038812598185,3.5606655332697,0.776110112217047,0,0.756424320671277,0.527853372491847,0.876782929710299,0.278047249225598,1.39300866608867,0.823128545631774,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0,0,0.0810688095458557,0,0.219550115291051,0.134206418760372,0.630869845692382,0.205809224758569,0,0,0,0.232236671860439,0.257734922644187,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0.193952487167626,0.350679099451593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.983528546038072,0,1.12385412991454,0.820481806145422,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0.963963949265421,0.141940085208269,0,0.162886959353576,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0.220528398054962,0,0.161464426695906,0.180938774784468,0.477489376012546,0,0,0.927126510052548,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0.0826534557253359,0,0,0,0,0.448549638131936,0.165458490457098,0.388902376688095,0.387479470433193,0.337912250981556,0.234714477291508,0.911430693907651,0.734015410979976,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0.214368379079066,0,1.12950368523413,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,1.35942722695261,0.51776031175182,0.415149390336707,0.399024873401031,0.341467211508268,0,0,0,0,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.37456602987953,0.384150914429216,0.229741875822453,0,0.347652977834566,0,0.412085900803307,0.147198920134397,0.342869252385415,0,0.238436189947321,0,0.376437521661322,0.169229215783353,0.365855945745545,0,0.407412341537585,0.561142271657738,0.237270036248348,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.499621155875892,0.701794825336225,0.214871054048298,0.191288332068843,0,0|short_description=p3@Tnfaip6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21930 | |||
|HGNC= | |||
|MCL_coexpression_id=53 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O08859 | |||
|association_with_transcript=0bp_to_ENSMUST00000065927_5end | |||
|cluster_id=chr2:51893525..51893540,+ | |||
|description=CAGE_peak_3_at_Tnfaip6_5end | |||
|id=chr2:51893525..51893540,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002374,1.33e-07,1;CL:0000202,1.33e-07,1;CL:0000199,1.33e-07,1;CL:0000855,1.33e-07,1;CL:0000589,1.33e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.51e-11!63;UBERON:0002346!3.33e-10!71;UBERON:0003075!3.33e-10!71;UBERON:0007284!3.33e-10!71;UBERON:0000970!1.46e-09!9;UBERON:0000019!1.46e-09!9;UBERON:0000047!1.46e-09!9;UBERON:0004088!1.46e-09!9;UBERON:0002104!1.46e-09!9;UBERON:0001456!1.46e-09!9;UBERON:0003072!1.46e-09!9;UBERON:0003071!1.46e-09!9;UBERON:0004128!1.46e-09!9;UBERON:0003056!2.00e-09!49;UBERON:0000020!2.11e-09!12;UBERON:0001032!2.11e-09!12;UBERON:0004456!2.11e-09!12;UBERON:0005085!7.19e-09!13;UBERON:0001444!1.66e-08!11;UBERON:0001049!1.17e-07!52;UBERON:0005068!1.17e-07!52;UBERON:0006241!1.17e-07!52;UBERON:0007135!1.17e-07!52;UBERON:0004121!1.34e-07!102;UBERON:0000924!1.34e-07!102;UBERON:0006601!1.34e-07!102;UBERON:0002020!6.02e-07!34;UBERON:0000153!8.36e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,9.85e-35,9;UBERON:0000019,9.85e-35,9;UBERON:0000047,9.85e-35,9;UBERON:0010312,9.85e-35,9;UBERON:0004088,9.85e-35,9;UBERON:0002104,9.85e-35,9;UBERON:0001456,9.85e-35,9;UBERON:0003072,9.85e-35,9;UBERON:0004128,9.85e-35,9;UBERON:0003071,9.85e-35,9;UBERON:0000020,1.12e-33,12;UBERON:0001032,1.12e-33,12;UBERON:0004456,1.12e-33,12;UBERON:0000033,4.85e-31,13;UBERON:0005085,4.85e-31,13;UBERON:0001444,2.38e-28,11;UBERON:0010371,2.52e-13,73;UBERON:0002346,5.63e-13,64;UBERON:0003075,5.63e-13,64;UBERON:0007284,5.63e-13,64;UBERON:0003056,6.44e-12,49;UBERON:0000153,3.27e-11,43;UBERON:0007811,9.31e-11,36;UBERON:0010314,2.81e-10,92;UBERON:0004121,6.62e-10,95;UBERON:0000924,6.62e-10,95;UBERON:0006601,6.62e-10,95 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0,0.436050312760893,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0.856952953211411,0.883474163806454,0.489963196859816,0.287536413054709,0,0,0.127687338085188,0,0.131886287730194,0,0,0.279182999001381,0.56276261003168,0.30559649555362,0.589257170947335,0.284743361598206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,1.46612694769419,0,0,0,0,0.449371918214468,0.457500602818626,1.00523481690292,0.347648640384553,0,0.41557608911912,0.162241263067758,0.305518091550949,0,0,0.631325567659422,1.04096354370163,1.60931473103431,2.70093194708024,1.50704817835715,3.06164246180975,2.69038812598185,3.5606655332697,0.776110112217047,0,0.756424320671277,0.527853372491847,0.876782929710299,0.278047249225598,1.39300866608867,0.823128545631774,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.350296027101508,0,0,0.0810688095458557,0,0.219550115291051,0.134206418760372,0.630869845692382,0.205809224758569,0,0,0,0.232236671860439,0.257734922644187,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0.193952487167626,0.350679099451593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.983528546038072,0,1.12385412991454,0.820481806145422,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0.963963949265421,0.141940085208269,0,0.162886959353576,0.824850614862677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0.220528398054962,0,0.161464426695906,0.180938774784468,0.477489376012546,0,0,0.927126510052548,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0.0826534557253359,0,0,0,0,0.448549638131936,0.165458490457098,0.388902376688095,0.387479470433193,0.337912250981556,0.234714477291508,0.911430693907651,0.734015410979976,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0.214368379079066,0,1.12950368523413,0.460325236507177,0,0.171853182343688,0.685082519770642,0,0,0.45032120322422,1.35942722695261,0.51776031175182,0.415149390336707,0.399024873401031,0.341467211508268,0,0,0,0,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.37456602987953,0.384150914429216,0.229741875822453,0,0.347652977834566,0,0.412085900803307,0.147198920134397,0.342869252385415,0,0.238436189947321,0,0.376437521661322,0.169229215783353,0.365855945745545,0,0.407412341537585,0.561142271657738,0.237270036248348,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.499621155875892,0.701794825336225,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p3@Tnfaip6 | |||
}} |
Revision as of 05:42, 5 August 2015
Short description: | p3@Tnfaip6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tnfaip6_5end |
Coexpression cluster: | MCL_coexpression_mm9:53 |
Association with transcript: | 0bp_to_ENSMUST00000065927_5end |
EntrezGene: | 21930 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ear hair cell | 1.33e-07 | 1 |
auditory hair cell | 1.33e-07 | 1 |
mechanoreceptor cell | 1.33e-07 | 1 |
sensory hair cell | 1.33e-07 | 1 |
cochlear inner hair cell | 1.33e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
eye | 9.85e-35 | 9 |
camera-type eye | 9.85e-35 | 9 |
simple eye | 9.85e-35 | 9 |
immature eye | 9.85e-35 | 9 |
ocular region | 9.85e-35 | 9 |
visual system | 9.85e-35 | 9 |
face | 9.85e-35 | 9 |
optic cup | 9.85e-35 | 9 |
optic vesicle | 9.85e-35 | 9 |
eye primordium | 9.85e-35 | 9 |
sense organ | 1.12e-33 | 12 |
sensory system | 1.12e-33 | 12 |
entire sense organ system | 1.12e-33 | 12 |
head | 4.85e-31 | 13 |
ectodermal placode | 4.85e-31 | 13 |
subdivision of head | 2.38e-28 | 11 |
ecto-epithelium | 2.52e-13 | 73 |
neurectoderm | 5.63e-13 | 64 |
neural plate | 5.63e-13 | 64 |
presumptive neural plate | 5.63e-13 | 64 |
pre-chordal neural plate | 6.44e-12 | 49 |
anterior region of body | 3.27e-11 | 43 |
craniocervical region | 9.31e-11 | 36 |
structure with developmental contribution from neural crest | 2.81e-10 | 92 |
ectoderm-derived structure | 6.62e-10 | 95 |
ectoderm | 6.62e-10 | 95 |
presumptive ectoderm | 6.62e-10 | 95 |