FFCP PHASE1:Mm9::chr19:60831850..60831882,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=332397|HGNC=|MCL_coexpression_id=1|UniProt=Q80WY3|association_with_transcript=-7bp_to_ENSMUST00000088237,NM_178421,uc008ibw.1_5end|description=CAGE_peak_1_at_Nanos1_5end|id=chr19:60831850..60831882,+|ontology_enrichment_celltype=CL:0000117!1.82e-11!23;CL:0000337!1.82e-11!23;CL:0000540!2.61e-07!33;CL:0000047!2.61e-07!33;CL:0000031!2.61e-07!33;CL:0000404!2.61e-07!33;CL:0000393!7.64e-07!39;CL:0000211!7.64e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,8.05e-20,23;CL:0000337,8.05e-20,23;CL:0000540,3.21e-12,33;CL:0000047,3.21e-12,33;CL:0000031,3.21e-12,33;CL:0000404,3.21e-12,33;CL:0000393,1.43e-09,39;CL:0000211,1.43e-09,39;CL:0002319,3.12e-08,43;CL:0000221,6.15e-08,44;CL:0000133,6.15e-08,44;CL:0000723,1.31e-07,91;CL:0000048,1.31e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.22e-21!52;UBERON:0005068!2.22e-21!52;UBERON:0006241!2.22e-21!52;UBERON:0007135!2.22e-21!52;UBERON:0000955!6.98e-19!50;UBERON:0006238!6.98e-19!50;UBERON:0002020!1.96e-18!34;UBERON:0003080!1.98e-18!40;UBERON:0002346!2.31e-18!71;UBERON:0003075!2.31e-18!71;UBERON:0007284!2.31e-18!71;UBERON:0002616!3.18e-18!49;UBERON:0003056!3.30e-18!49;UBERON:0000033!5.41e-18!63;UBERON:0002780!8.03e-18!39;UBERON:0001890!8.03e-18!39;UBERON:0006240!8.03e-18!39;UBERON:0001017!1.37e-17!73;UBERON:0005743!1.37e-17!73;UBERON:0000073!2.58e-17!75;UBERON:0001016!2.58e-17!75;UBERON:0002791!9.85e-16!29;UBERON:0003528!9.85e-16!29;UBERON:0001893!9.85e-16!29;UBERON:0007811!1.78e-14!86;UBERON:0004121!2.57e-13!102;UBERON:0000924!2.57e-13!102;UBERON:0006601!2.57e-13!102;UBERON:0000153!2.23e-11!94;UBERON:0000956!5.27e-11!21;UBERON:0001869!5.27e-11!21;UBERON:0000203!5.27e-11!21;UBERON:0002619!4.33e-09!17;UBERON:0002021!2.93e-08!10;UBERON:0000411!2.93e-08!10;UBERON:0001950!2.93e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.93e-37,54;UBERON:0001049,1.19e-36,52;UBERON:0005068,1.19e-36,52;UBERON:0006241,1.19e-36,52;UBERON:0007135,1.19e-36,52;UBERON:0002020,2.70e-35,34;UBERON:0001017,2.11e-33,73;UBERON:0003080,6.58e-33,40;UBERON:0000955,1.49e-32,47;UBERON:0006238,1.49e-32,47;UBERON:0001016,3.43e-32,75;UBERON:0002780,1.50e-31,39;UBERON:0001890,1.50e-31,39;UBERON:0006240,1.50e-31,39;UBERON:0003528,2.99e-31,29;UBERON:0002791,2.99e-31,29;UBERON:0001893,2.99e-31,29;UBERON:0002616,4.13e-31,46;UBERON:0002346,9.60e-28,64;UBERON:0003075,9.60e-28,64;UBERON:0007284,9.60e-28,64;UBERON:0003056,3.69e-25,49;UBERON:0010371,5.35e-23,73;UBERON:0004121,6.86e-23,95;UBERON:0000924,6.86e-23,95;UBERON:0006601,6.86e-23,95;UBERON:0000956,2.29e-20,21;UBERON:0001869,2.29e-20,21;UBERON:0000203,2.29e-20,21;UBERON:0002619,6.97e-18,17;UBERON:0002021,3.30e-17,10;UBERON:0000411,3.30e-17,10;UBERON:0001950,3.30e-17,10;UBERON:0010314,4.58e-16,92;UBERON:0002420,5.23e-12,8;UBERON:0007245,5.23e-12,8;UBERON:0010009,5.23e-12,8;UBERON:0010011,5.23e-12,8;UBERON:0000454,5.23e-12,8;UBERON:0000025,5.47e-11,114;UBERON:0004111,1.29e-09,122;UBERON:0000369,1.32e-08,5;UBERON:0002435,1.32e-08,5;UBERON:0000204,1.32e-08,5;UBERON:0010082,1.32e-08,5;UBERON:0011216,6.46e-07,194|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,1.42035655785734,0.563154888606667,0,1.02730780935303,0.717949430958028,1.36960583944965,1.13646523144697,0.333109761815663,0.607425802169478,1.39912375625629,0.946386496074713,1.23402990245165,2.12194825899015,0.935476191661768,0.198581902401771,0,0,0,0,0,0,0.380046838912748,0,0,2.54012269383853,1.23012957516914,0,0,0,0.408338712524738,0.837063261473815,0.7813353445238,1.0470474879476,1.17646297606203,0.683045484958446,1.45653105909346,0.251793635951155,0.101376931219515,0.367093504323363,0,0,0,0.194429899074283,0,0,1.34226084846189,0,1.00828139742739,0.514518872071894,0,0.515672092277442,2.02316460859598,4.23192783417626,2.53532561402472,0,0,0,0,0,0.299600110518405,0,1.24427534770173,1.35005938331691,0.841299845405528,1.99955689082663,1.76694832761291,0.979926393719632,1.53352753629178,3.67687514644008,0,2.042997409363,2.30409799884365,2.76961204233407,3.11057988248193,2.6045668527838,3.07101298901519,1.12552522006336,2.29197371665215,2.35702868378934,0.996601765593721,3.16879057903011,0.151452386666368,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.253359865475099,0,0.45673551887624,0.258937883647172,0.29688427812965,0.346970653532272,0,0,0.301445281105245,0,0,0.247194967734374,0.144599356919912,0,0.485300549842228,0.662524555381181,0.969750506270444,0,1.17112318804619,0.83778682725382,0,0.11981512450592,0,0,2.54644086988199,6.40500843946077,3.14135880282161,7.64827008846016,6.13717097592793,4.1557608911912,3.73154905055843,0.509196819251581,0.497627882440372,0.252722758433675,0.420883711772948,0.390361328888111,0.689706313300419,0,0.753524089178575,0.544291993210623,0.512454881139399,0.281105173679186,0.258703370739016,0.215567992932842,0,0,0,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0,0,0.268273401399619,0.116765342367169,0.658239399653922,0,0.162137619091711,0,0,0,2.94405927989778,3.39585220851639,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.610953983535943,0,0.210407459670956,0.0632365371242573,0.147610147979602,0,0,0,0.166845105716094,0.393117990226406,0.899448449539415,0.405720242777006,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.739012760666419,0.37898282354097,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,0.963303539926752,1.17211686592203,0.163934945376675,0,0.315508219416257,0.390438744296638,0.430846795465598,0,0,0,0,0.292255857911312,0,3.53453448063988,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.632073515871632,0,0,1.02131881726136,0.36012218806262,0.129358683782755,0.214337035031592,0.886701168211368,1.24858172321449,0.493647061806363,1.2178597964584,0.23467170806371,0.21183207086382,0,0.16488625294148,0,0.482503399425247,0.477489376012546,0,0,1.48340241608408,0.854354403989263,0.206386867963223,0.185194527369712,0.941842285023455,0.956859594047176,0.457556346413045,0,0,0.138199973804424,0,0.316335993581135,0,0.216010681643603,0.209088296014469,0,0.134864346384821,0.0826534557253359,0.26175594198403,0,0,0.56369293868419,0.299033092087958,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.2604087696879,1.25831213310853,0,0,0.316011120628178,0.202725215290164,0.513554785824136,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,0.226730383615211,0.221985953374065,0.448569283047378,0.503653849092235,0,0.187682475451182,0.183151624267265,0,0,6.21227026878773,5.9842280745933,2.86447756719698,4.1244763762485,5.48066015816514,4.5323633843382,6.07520250208625,5.85417564191487,8.60970577069989,5.69536342927002,0.415149390336707,0.399024873401031,0.341467211508268,0.486213434136588,1.04806581313991,0.735374033800057,0.666740183404846,0.618105171716683,0.320919209591815,0,0,0.377252682772152,0.187283014939765,0.448176066834085,0.0574354689556133,0,0.811190281613988,0.192909220463705,0,0,0.342869252385415,0.354951612318675,0,0.145346416632329,0.470546902076653,0.592302255241736,0.365855945745545,0,0.135804113845862,0,0.593175090620871,0.689531376628944,0.409231043169689,0.619747364743864,0.771626443924566,0.999242311751784,0.701794825336225,0.214871054048298,0.191288332068843,0.220591419119515,0|short_description=p1@Nanos1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:332397 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80WY3 | |||
|association_with_transcript=-7bp_to_ENSMUST00000088237,NM_178421,uc008ibw.1_5end | |||
|cluster_id=chr19:60831850..60831882,+ | |||
|description=CAGE_peak_1_at_Nanos1_5end | |||
|id=chr19:60831850..60831882,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.82e-11!23;CL:0000337!1.82e-11!23;CL:0000540!2.61e-07!33;CL:0000047!2.61e-07!33;CL:0000031!2.61e-07!33;CL:0000404!2.61e-07!33;CL:0000393!7.64e-07!39;CL:0000211!7.64e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.05e-20,23;CL:0000337,8.05e-20,23;CL:0000540,3.21e-12,33;CL:0000047,3.21e-12,33;CL:0000031,3.21e-12,33;CL:0000404,3.21e-12,33;CL:0000393,1.43e-09,39;CL:0000211,1.43e-09,39;CL:0002319,3.12e-08,43;CL:0000221,6.15e-08,44;CL:0000133,6.15e-08,44;CL:0000723,1.31e-07,91;CL:0000048,1.31e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.22e-21!52;UBERON:0005068!2.22e-21!52;UBERON:0006241!2.22e-21!52;UBERON:0007135!2.22e-21!52;UBERON:0000955!6.98e-19!50;UBERON:0006238!6.98e-19!50;UBERON:0002020!1.96e-18!34;UBERON:0003080!1.98e-18!40;UBERON:0002346!2.31e-18!71;UBERON:0003075!2.31e-18!71;UBERON:0007284!2.31e-18!71;UBERON:0002616!3.18e-18!49;UBERON:0003056!3.30e-18!49;UBERON:0000033!5.41e-18!63;UBERON:0002780!8.03e-18!39;UBERON:0001890!8.03e-18!39;UBERON:0006240!8.03e-18!39;UBERON:0001017!1.37e-17!73;UBERON:0005743!1.37e-17!73;UBERON:0000073!2.58e-17!75;UBERON:0001016!2.58e-17!75;UBERON:0002791!9.85e-16!29;UBERON:0003528!9.85e-16!29;UBERON:0001893!9.85e-16!29;UBERON:0007811!1.78e-14!86;UBERON:0004121!2.57e-13!102;UBERON:0000924!2.57e-13!102;UBERON:0006601!2.57e-13!102;UBERON:0000153!2.23e-11!94;UBERON:0000956!5.27e-11!21;UBERON:0001869!5.27e-11!21;UBERON:0000203!5.27e-11!21;UBERON:0002619!4.33e-09!17;UBERON:0002021!2.93e-08!10;UBERON:0000411!2.93e-08!10;UBERON:0001950!2.93e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.93e-37,54;UBERON:0001049,1.19e-36,52;UBERON:0005068,1.19e-36,52;UBERON:0006241,1.19e-36,52;UBERON:0007135,1.19e-36,52;UBERON:0002020,2.70e-35,34;UBERON:0001017,2.11e-33,73;UBERON:0003080,6.58e-33,40;UBERON:0000955,1.49e-32,47;UBERON:0006238,1.49e-32,47;UBERON:0001016,3.43e-32,75;UBERON:0002780,1.50e-31,39;UBERON:0001890,1.50e-31,39;UBERON:0006240,1.50e-31,39;UBERON:0003528,2.99e-31,29;UBERON:0002791,2.99e-31,29;UBERON:0001893,2.99e-31,29;UBERON:0002616,4.13e-31,46;UBERON:0002346,9.60e-28,64;UBERON:0003075,9.60e-28,64;UBERON:0007284,9.60e-28,64;UBERON:0003056,3.69e-25,49;UBERON:0010371,5.35e-23,73;UBERON:0004121,6.86e-23,95;UBERON:0000924,6.86e-23,95;UBERON:0006601,6.86e-23,95;UBERON:0000956,2.29e-20,21;UBERON:0001869,2.29e-20,21;UBERON:0000203,2.29e-20,21;UBERON:0002619,6.97e-18,17;UBERON:0002021,3.30e-17,10;UBERON:0000411,3.30e-17,10;UBERON:0001950,3.30e-17,10;UBERON:0010314,4.58e-16,92;UBERON:0002420,5.23e-12,8;UBERON:0007245,5.23e-12,8;UBERON:0010009,5.23e-12,8;UBERON:0010011,5.23e-12,8;UBERON:0000454,5.23e-12,8;UBERON:0000025,5.47e-11,114;UBERON:0004111,1.29e-09,122;UBERON:0000369,1.32e-08,5;UBERON:0002435,1.32e-08,5;UBERON:0000204,1.32e-08,5;UBERON:0010082,1.32e-08,5;UBERON:0011216,6.46e-07,194 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,1.42035655785734,0.563154888606667,0,1.02730780935303,0.717949430958028,1.36960583944965,1.13646523144697,0.333109761815663,0.607425802169478,1.39912375625629,0.946386496074713,1.23402990245165,2.12194825899015,0.935476191661768,0.198581902401771,0,0,0,0,0,0,0.380046838912748,0,0,2.54012269383853,1.23012957516914,0,0,0,0.408338712524738,0.837063261473815,0.7813353445238,1.0470474879476,1.17646297606203,0.683045484958446,1.45653105909346,0.251793635951155,0.101376931219515,0.367093504323363,0,0,0,0.194429899074283,0,0,1.34226084846189,0,1.00828139742739,0.514518872071894,0,0.515672092277442,2.02316460859598,4.23192783417626,2.53532561402472,0,0,0,0,0,0.299600110518405,0,1.24427534770173,1.35005938331691,0.841299845405528,1.99955689082663,1.76694832761291,0.979926393719632,1.53352753629178,3.67687514644008,0,2.042997409363,2.30409799884365,2.76961204233407,3.11057988248193,2.6045668527838,3.07101298901519,1.12552522006336,2.29197371665215,2.35702868378934,0.996601765593721,3.16879057903011,0.151452386666368,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.253359865475099,0,0.45673551887624,0.258937883647172,0.29688427812965,0.346970653532272,0,0,0.301445281105245,0,0,0.247194967734374,0.144599356919912,0,0.485300549842228,0.662524555381181,0.969750506270444,0,1.17112318804619,0.83778682725382,0,0.11981512450592,0,0,2.54644086988199,6.40500843946077,3.14135880282161,7.64827008846016,6.13717097592793,4.1557608911912,3.73154905055843,0.509196819251581,0.497627882440372,0.252722758433675,0.420883711772948,0.390361328888111,0.689706313300419,0,0.753524089178575,0.544291993210623,0.512454881139399,0.281105173679186,0.258703370739016,0.215567992932842,0,0,0,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.36012412292203,0,0,0,0,0.268273401399619,0.116765342367169,0.658239399653922,0,0.162137619091711,0,0,0,2.94405927989778,3.39585220851639,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0.610953983535943,0,0.210407459670956,0.0632365371242573,0.147610147979602,0,0,0,0.166845105716094,0.393117990226406,0.899448449539415,0.405720242777006,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.739012760666419,0.37898282354097,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,0.963303539926752,1.17211686592203,0.163934945376675,0,0.315508219416257,0.390438744296638,0.430846795465598,0,0,0,0,0.292255857911312,0,3.53453448063988,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.632073515871632,0,0,1.02131881726136,0.36012218806262,0.129358683782755,0.214337035031592,0.886701168211368,1.24858172321449,0.493647061806363,1.2178597964584,0.23467170806371,0.21183207086382,0,0.16488625294148,0,0.482503399425247,0.477489376012546,0,0,1.48340241608408,0.854354403989263,0.206386867963223,0.185194527369712,0.941842285023455,0.956859594047176,0.457556346413045,0,0,0.138199973804424,0,0.316335993581135,0,0.216010681643603,0.209088296014469,0,0.134864346384821,0.0826534557253359,0.26175594198403,0,0,0.56369293868419,0.299033092087958,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.2604087696879,1.25831213310853,0,0,0.316011120628178,0.202725215290164,0.513554785824136,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,0.226730383615211,0.221985953374065,0.448569283047378,0.503653849092235,0,0.187682475451182,0.183151624267265,0,0,6.21227026878773,5.9842280745933,2.86447756719698,4.1244763762485,5.48066015816514,4.5323633843382,6.07520250208625,5.85417564191487,8.60970577069989,5.69536342927002,0.415149390336707,0.399024873401031,0.341467211508268,0.486213434136588,1.04806581313991,0.735374033800057,0.666740183404846,0.618105171716683,0.320919209591815,0,0,0.377252682772152,0.187283014939765,0.448176066834085,0.0574354689556133,0,0.811190281613988,0.192909220463705,0,0,0.342869252385415,0.354951612318675,0,0.145346416632329,0.470546902076653,0.592302255241736,0.365855945745545,0,0.135804113845862,0,0.593175090620871,0.689531376628944,0.409231043169689,0.619747364743864,0.771626443924566,0.999242311751784,0.701794825336225,0.214871054048298,0.191288332068843,0.220591419119515,0 | |||
|short_description=p1@Nanos1 | |||
}} |
Revision as of 11:43, 4 August 2015
Short description: | p1@Nanos1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nanos1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -7bp_to_ENSMUST00000088237, NM_178421, uc008ibw.1_5end |
EntrezGene: | 332397 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.05e-20 | 23 |
neuroblast (sensu Vertebrata) | 8.05e-20 | 23 |
neuron | 3.21e-12 | 33 |
neuronal stem cell | 3.21e-12 | 33 |
neuroblast | 3.21e-12 | 33 |
electrically signaling cell | 3.21e-12 | 33 |
electrically responsive cell | 1.43e-09 | 39 |
electrically active cell | 1.43e-09 | 39 |
neural cell | 3.12e-08 | 43 |
ectodermal cell | 6.15e-08 | 44 |
neurectodermal cell | 6.15e-08 | 44 |
somatic stem cell | 1.31e-07 | 91 |
multi fate stem cell | 1.31e-07 | 91 |