FFCP PHASE1:Mm9::chr3:57652002..57652020,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18645|HGNC=|MCL_coexpression_id=620|UniProt=Q9JJV2|association_with_transcript=-323bp_to_NM_019410,uc008phn.2_5end|description=CAGE_peak_4_at_Pfn2_5end|id=chr3:57652002..57652020,-|ontology_enrichment_celltype=CL:0002319!3.59e-14!43;CL:0000221!7.33e-14!44;CL:0000133!7.33e-14!44;CL:0000055!3.15e-13!50;CL:0000540!3.14e-11!33;CL:0000047!3.14e-11!33;CL:0000031!3.14e-11!33;CL:0000404!3.14e-11!33;CL:0000393!6.26e-11!39;CL:0000211!6.26e-11!39;CL:0000117!8.61e-10!23;CL:0000337!8.61e-10!23|ontology_enrichment_celltype_v019_2=CL:0002319,5.33e-13,43;CL:0000117,7.58e-13,23;CL:0000337,7.58e-13,23;CL:0000221,1.47e-12,44;CL:0000133,1.47e-12,44;CL:0000540,8.36e-09,33;CL:0000047,8.36e-09,33;CL:0000031,8.36e-09,33;CL:0000404,8.36e-09,33;CL:0000393,1.02e-07,39;CL:0000211,1.02e-07,39;CL:0002453,3.42e-07,8;CL:0000128,7.37e-07,6;CL:0000126,7.37e-07,6;CL:0000127,7.37e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.38e-30!73;UBERON:0005743!1.38e-30!73;UBERON:0004121!1.41e-30!102;UBERON:0000924!1.41e-30!102;UBERON:0006601!1.41e-30!102;UBERON:0000073!2.54e-29!75;UBERON:0001016!2.54e-29!75;UBERON:0002346!9.14e-27!71;UBERON:0003075!9.14e-27!71;UBERON:0007284!9.14e-27!71;UBERON:0001049!3.41e-24!52;UBERON:0005068!3.41e-24!52;UBERON:0006241!3.41e-24!52;UBERON:0007135!3.41e-24!52;UBERON:0000033!8.06e-24!63;UBERON:0000955!1.09e-23!50;UBERON:0006238!1.09e-23!50;UBERON:0002616!2.86e-23!49;UBERON:0003056!7.61e-22!49;UBERON:0003080!4.44e-20!40;UBERON:0002780!7.37e-20!39;UBERON:0001890!7.37e-20!39;UBERON:0006240!7.37e-20!39;UBERON:0002020!3.26e-19!34;UBERON:0002791!1.64e-17!29;UBERON:0003528!1.64e-17!29;UBERON:0001893!1.64e-17!29;UBERON:0000956!4.74e-13!21;UBERON:0001869!4.74e-13!21;UBERON:0000203!4.74e-13!21;UBERON:0002619!1.47e-12!17;UBERON:0007811!3.21e-12!86;UBERON:0000153!1.97e-11!94;UBERON:0002021!8.80e-08!10;UBERON:0000411!8.80e-08!10;UBERON:0001950!8.80e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.02e-31,54;UBERON:0001017,4.47e-30,73;UBERON:0001049,3.36e-29,52;UBERON:0005068,3.36e-29,52;UBERON:0006241,3.36e-29,52;UBERON:0007135,3.36e-29,52;UBERON:0001016,5.94e-29,75;UBERON:0002020,1.27e-28,34;UBERON:0004121,1.87e-28,95;UBERON:0000924,1.87e-28,95;UBERON:0006601,1.87e-28,95;UBERON:0002346,2.41e-28,64;UBERON:0003075,2.41e-28,64;UBERON:0007284,2.41e-28,64;UBERON:0003528,8.57e-28,29;UBERON:0002791,8.57e-28,29;UBERON:0001893,8.57e-28,29;UBERON:0002616,2.25e-26,46;UBERON:0010371,2.48e-26,73;UBERON:0000955,1.30e-25,47;UBERON:0006238,1.30e-25,47;UBERON:0003056,3.78e-24,49;UBERON:0002780,3.99e-24,39;UBERON:0001890,3.99e-24,39;UBERON:0006240,3.99e-24,39;UBERON:0003080,2.58e-23,40;UBERON:0002619,5.98e-23,17;UBERON:0000956,2.45e-20,21;UBERON:0001869,2.45e-20,21;UBERON:0000203,2.45e-20,21;UBERON:0010314,2.33e-16,92;UBERON:0002021,1.02e-12,10;UBERON:0000411,1.02e-12,10;UBERON:0001950,1.02e-12,10;UBERON:0001954,1.14e-11,7;UBERON:0003022,1.14e-11,7;UBERON:0002421,1.14e-11,7;UBERON:0000349,1.14e-11,7;UBERON:0002600,1.14e-11,7;UBERON:0000025,1.13e-08,114;UBERON:0002420,1.81e-08,8;UBERON:0007245,1.81e-08,8;UBERON:0010009,1.81e-08,8;UBERON:0010011,1.81e-08,8;UBERON:0000454,1.81e-08,8;UBERON:0004111,1.68e-07,122;UBERON:0000369,1.74e-07,5;UBERON:0002435,1.74e-07,5;UBERON:0000204,1.74e-07,5;UBERON:0010082,1.74e-07,5|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755380907853464,0.608261587317087,1.28482726513177,2.34717403304412,2.18025156380447,2.63623419281366,4.86074747685709,0.279972843250725,2.87505128729943,0,0,0,0,0,0.515672092277442,2.42779753031517,0,1.90149421051854,1.0165335962074,0.889294796111139,0,0,0,0.898800331555214,4.61061966385865,0.207379224616955,0.810035629990144,0.420649922702764,1.99955689082663,1.54607978666129,4.40966877173835,3.35459148563827,4.5960939330501,2.20231761998777,1.27687338085188,2.15049146558741,2.63772575460388,2.19570344645783,1.56274011167028,2.79182999001381,1.68828783009504,0.916789486660861,0.883885756421003,1.13897344639282,0.372798891650601,0,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0.520455980298408,0.608930956624282,0.461230994512117,0.301445281105245,0.587943535678524,0,0,0,0.884610551949874,0.161766849947409,0.220841518460394,1.45462575940567,0,0,0.41889341362691,0,0,0,0,0.599162557619291,2.28750301409313,2.26177833803156,5.56237824615285,5.62574006126727,1.87009240103604,2.27137768294861,0.611036183101898,0.248813941220186,0.252722758433675,0.210441855886474,0.390361328888111,1.14951052216736,0.180062129805349,0.60281927134286,1.63287597963187,2.43416068541215,3.84177070694888,0.258703370739016,0.215567992932842,0.378212160335639,0,0.43839146485515,0,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,3.99550902271842,1.9551876352064,0,0.264450566663544,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.342745537829186,1.1270773567308,1.01825663922657,1.74557238450863,0.98190147846446,2.52946148497029,0.147610147979602,0.470996183524124,0.246794327843601,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.488894929326078,0.339490171550376,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,2.24770825982909,1.75817529888305,0.327869890753351,2.27223834483936,0.315508219416257,0.780877488593277,0.646270193198397,0.477937595905104,0.668396022247182,0.566153061577665,0.404810701674894,0.584511715822624,1.58115111178609,0.963963949265421,0.425820255624806,0.534196811001766,0.325773918707152,0.659880491890142,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0.900305470156551,1.29358683782755,0.428674070063185,0.709360934569094,0.535106452806212,0.658196082408484,0.304464949114599,0,0,0.220528398054962,1.97863503529776,0.484393280087717,0.301564624640779,1.07435109602823,0.984845398470368,0,2.59595422814714,0,0.206386867963223,0,0,0,0,0,0.279902904647316,0,0,0.316335993581135,0.203319467126849,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,1.69107881605257,1.04661582230785,0.330916980914195,1.55560950675238,1.16243841129958,2.02747350588934,0.469428954583016,0.2604087696879,0.314578033277133,0.483168241652012,0.576060012515731,0,0.405450430580328,0.205421914329655,0.25984164595559,0,0,0.240390899039938,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0.187682475451182,0.183151624267265,0,0,2.82375921308533,0.920650473014354,3.43737308063638,3.60891682921744,2.74033007908257,3.0215755895588,2.02506750069542,4.95353323546643,4.53142408984205,2.5888015587591,0.518936737920883,0.798049746802062,0.170733605754134,0,0.419226325255965,0.367687016900028,0,0.412070114477788,0.320919209591815,0.505394423527595,0.50695859978048,0.754505365544305,0.561849044819294,0.384150914429216,0.34461281373368,0,0.463537303779422,0.77163688185482,0,0.883193520806384,0.342869252385415,0.354951612318675,0.476872379894642,0.581385666529314,0.282328141245992,0.338458431566706,0,0.263069711437843,0.407412341537585,0,0.355905054372522,0.29551344712669,0.409231043169689,0,0.385813221962283,0.999242311751784,0,0.859484216193193,0.382576664137687,0.441182838239031,0.695603506861264|short_description=p4@Pfn2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18645 | |||
|HGNC= | |||
|MCL_coexpression_id=620 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JJV2 | |||
|association_with_transcript=-323bp_to_NM_019410,uc008phn.2_5end | |||
|cluster_id=chr3:57652002..57652020,- | |||
|description=CAGE_peak_4_at_Pfn2_5end | |||
|id=chr3:57652002..57652020,- | |||
|ontology_enrichment_celltype=CL:0002319!3.59e-14!43;CL:0000221!7.33e-14!44;CL:0000133!7.33e-14!44;CL:0000055!3.15e-13!50;CL:0000540!3.14e-11!33;CL:0000047!3.14e-11!33;CL:0000031!3.14e-11!33;CL:0000404!3.14e-11!33;CL:0000393!6.26e-11!39;CL:0000211!6.26e-11!39;CL:0000117!8.61e-10!23;CL:0000337!8.61e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.33e-13,43;CL:0000117,7.58e-13,23;CL:0000337,7.58e-13,23;CL:0000221,1.47e-12,44;CL:0000133,1.47e-12,44;CL:0000540,8.36e-09,33;CL:0000047,8.36e-09,33;CL:0000031,8.36e-09,33;CL:0000404,8.36e-09,33;CL:0000393,1.02e-07,39;CL:0000211,1.02e-07,39;CL:0002453,3.42e-07,8;CL:0000128,7.37e-07,6;CL:0000126,7.37e-07,6;CL:0000127,7.37e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.38e-30!73;UBERON:0005743!1.38e-30!73;UBERON:0004121!1.41e-30!102;UBERON:0000924!1.41e-30!102;UBERON:0006601!1.41e-30!102;UBERON:0000073!2.54e-29!75;UBERON:0001016!2.54e-29!75;UBERON:0002346!9.14e-27!71;UBERON:0003075!9.14e-27!71;UBERON:0007284!9.14e-27!71;UBERON:0001049!3.41e-24!52;UBERON:0005068!3.41e-24!52;UBERON:0006241!3.41e-24!52;UBERON:0007135!3.41e-24!52;UBERON:0000033!8.06e-24!63;UBERON:0000955!1.09e-23!50;UBERON:0006238!1.09e-23!50;UBERON:0002616!2.86e-23!49;UBERON:0003056!7.61e-22!49;UBERON:0003080!4.44e-20!40;UBERON:0002780!7.37e-20!39;UBERON:0001890!7.37e-20!39;UBERON:0006240!7.37e-20!39;UBERON:0002020!3.26e-19!34;UBERON:0002791!1.64e-17!29;UBERON:0003528!1.64e-17!29;UBERON:0001893!1.64e-17!29;UBERON:0000956!4.74e-13!21;UBERON:0001869!4.74e-13!21;UBERON:0000203!4.74e-13!21;UBERON:0002619!1.47e-12!17;UBERON:0007811!3.21e-12!86;UBERON:0000153!1.97e-11!94;UBERON:0002021!8.80e-08!10;UBERON:0000411!8.80e-08!10;UBERON:0001950!8.80e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.02e-31,54;UBERON:0001017,4.47e-30,73;UBERON:0001049,3.36e-29,52;UBERON:0005068,3.36e-29,52;UBERON:0006241,3.36e-29,52;UBERON:0007135,3.36e-29,52;UBERON:0001016,5.94e-29,75;UBERON:0002020,1.27e-28,34;UBERON:0004121,1.87e-28,95;UBERON:0000924,1.87e-28,95;UBERON:0006601,1.87e-28,95;UBERON:0002346,2.41e-28,64;UBERON:0003075,2.41e-28,64;UBERON:0007284,2.41e-28,64;UBERON:0003528,8.57e-28,29;UBERON:0002791,8.57e-28,29;UBERON:0001893,8.57e-28,29;UBERON:0002616,2.25e-26,46;UBERON:0010371,2.48e-26,73;UBERON:0000955,1.30e-25,47;UBERON:0006238,1.30e-25,47;UBERON:0003056,3.78e-24,49;UBERON:0002780,3.99e-24,39;UBERON:0001890,3.99e-24,39;UBERON:0006240,3.99e-24,39;UBERON:0003080,2.58e-23,40;UBERON:0002619,5.98e-23,17;UBERON:0000956,2.45e-20,21;UBERON:0001869,2.45e-20,21;UBERON:0000203,2.45e-20,21;UBERON:0010314,2.33e-16,92;UBERON:0002021,1.02e-12,10;UBERON:0000411,1.02e-12,10;UBERON:0001950,1.02e-12,10;UBERON:0001954,1.14e-11,7;UBERON:0003022,1.14e-11,7;UBERON:0002421,1.14e-11,7;UBERON:0000349,1.14e-11,7;UBERON:0002600,1.14e-11,7;UBERON:0000025,1.13e-08,114;UBERON:0002420,1.81e-08,8;UBERON:0007245,1.81e-08,8;UBERON:0010009,1.81e-08,8;UBERON:0010011,1.81e-08,8;UBERON:0000454,1.81e-08,8;UBERON:0004111,1.68e-07,122;UBERON:0000369,1.74e-07,5;UBERON:0002435,1.74e-07,5;UBERON:0000204,1.74e-07,5;UBERON:0010082,1.74e-07,5 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755380907853464,0.608261587317087,1.28482726513177,2.34717403304412,2.18025156380447,2.63623419281366,4.86074747685709,0.279972843250725,2.87505128729943,0,0,0,0,0,0.515672092277442,2.42779753031517,0,1.90149421051854,1.0165335962074,0.889294796111139,0,0,0,0.898800331555214,4.61061966385865,0.207379224616955,0.810035629990144,0.420649922702764,1.99955689082663,1.54607978666129,4.40966877173835,3.35459148563827,4.5960939330501,2.20231761998777,1.27687338085188,2.15049146558741,2.63772575460388,2.19570344645783,1.56274011167028,2.79182999001381,1.68828783009504,0.916789486660861,0.883885756421003,1.13897344639282,0.372798891650601,0,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0.520455980298408,0.608930956624282,0.461230994512117,0.301445281105245,0.587943535678524,0,0,0,0.884610551949874,0.161766849947409,0.220841518460394,1.45462575940567,0,0,0.41889341362691,0,0,0,0,0.599162557619291,2.28750301409313,2.26177833803156,5.56237824615285,5.62574006126727,1.87009240103604,2.27137768294861,0.611036183101898,0.248813941220186,0.252722758433675,0.210441855886474,0.390361328888111,1.14951052216736,0.180062129805349,0.60281927134286,1.63287597963187,2.43416068541215,3.84177070694888,0.258703370739016,0.215567992932842,0.378212160335639,0,0.43839146485515,0,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,3.99550902271842,1.9551876352064,0,0.264450566663544,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.342745537829186,1.1270773567308,1.01825663922657,1.74557238450863,0.98190147846446,2.52946148497029,0.147610147979602,0.470996183524124,0.246794327843601,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.488894929326078,0.339490171550376,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,2.24770825982909,1.75817529888305,0.327869890753351,2.27223834483936,0.315508219416257,0.780877488593277,0.646270193198397,0.477937595905104,0.668396022247182,0.566153061577665,0.404810701674894,0.584511715822624,1.58115111178609,0.963963949265421,0.425820255624806,0.534196811001766,0.325773918707152,0.659880491890142,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0.900305470156551,1.29358683782755,0.428674070063185,0.709360934569094,0.535106452806212,0.658196082408484,0.304464949114599,0,0,0.220528398054962,1.97863503529776,0.484393280087717,0.301564624640779,1.07435109602823,0.984845398470368,0,2.59595422814714,0,0.206386867963223,0,0,0,0,0,0.279902904647316,0,0,0.316335993581135,0.203319467126849,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,1.69107881605257,1.04661582230785,0.330916980914195,1.55560950675238,1.16243841129958,2.02747350588934,0.469428954583016,0.2604087696879,0.314578033277133,0.483168241652012,0.576060012515731,0,0.405450430580328,0.205421914329655,0.25984164595559,0,0,0.240390899039938,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0.187682475451182,0.183151624267265,0,0,2.82375921308533,0.920650473014354,3.43737308063638,3.60891682921744,2.74033007908257,3.0215755895588,2.02506750069542,4.95353323546643,4.53142408984205,2.5888015587591,0.518936737920883,0.798049746802062,0.170733605754134,0,0.419226325255965,0.367687016900028,0,0.412070114477788,0.320919209591815,0.505394423527595,0.50695859978048,0.754505365544305,0.561849044819294,0.384150914429216,0.34461281373368,0,0.463537303779422,0.77163688185482,0,0.883193520806384,0.342869252385415,0.354951612318675,0.476872379894642,0.581385666529314,0.282328141245992,0.338458431566706,0,0.263069711437843,0.407412341537585,0,0.355905054372522,0.29551344712669,0.409231043169689,0,0.385813221962283,0.999242311751784,0,0.859484216193193,0.382576664137687,0.441182838239031,0.695603506861264 | |||
|short_description=p4@Pfn2 | |||
}} |
Revision as of 21:33, 3 August 2015
Short description: | p4@Pfn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pfn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:620 |
Association with transcript: | -323bp_to_NM_019410, uc008phn.2_5end |
EntrezGene: | 18645 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.33e-13 | 43 |
CNS neuron (sensu Vertebrata) | 7.58e-13 | 23 |
neuroblast (sensu Vertebrata) | 7.58e-13 | 23 |
ectodermal cell | 1.47e-12 | 44 |
neurectodermal cell | 1.47e-12 | 44 |
neuron | 8.36e-09 | 33 |
neuronal stem cell | 8.36e-09 | 33 |
neuroblast | 8.36e-09 | 33 |
electrically signaling cell | 8.36e-09 | 33 |
electrically responsive cell | 1.02e-07 | 39 |
electrically active cell | 1.02e-07 | 39 |
oligodendrocyte precursor cell | 3.42e-07 | 8 |
oligodendrocyte | 7.37e-07 | 6 |
macroglial cell | 7.37e-07 | 6 |
astrocyte | 7.37e-07 | 6 |