FFCP PHASE1:Hg19::chr12:20975516..20975562,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:20975516..20975562,+ | |||
|description=CAGE_peak_at_chr12:20975516..20975562,+ | |description=CAGE_peak_at_chr12:20975516..20975562,+ | ||
|id=chr12:20975516..20975562,+ | |id=chr12:20975516..20975562,+ | ||
Latest revision as of 07:28, 24 July 2015
| Short description: | p@chr12:20975516..20975562, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr12:20975516..20975562, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p@chr12:20975516..20975562+ |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| larynx | 4.99e-29 | 9 |
| respiratory primordium | 5.59e-14 | 38 |
| endoderm of foregut | 5.59e-14 | 38 |
| upper respiratory tract | 4.14e-13 | 19 |
| digestive system | 8.47e-12 | 145 |
| digestive tract | 8.47e-12 | 145 |
| primitive gut | 8.47e-12 | 145 |
| endoderm-derived structure | 2.61e-11 | 160 |
| endoderm | 2.61e-11 | 160 |
| presumptive endoderm | 2.61e-11 | 160 |
Showing 1 to 10 of 22 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 6.95e-59 | 106 |
| cell type cancer | 4.62e-44 | 143 |
| cancer | 5.59e-28 | 235 |
| disease of cellular proliferation | 3.21e-27 | 239 |
| squamous cell carcinoma | 7.15e-25 | 14 |
| signet ring cell adenocarcinoma | 1.01e-10 | 2 |
| adenocarcinoma | 1.95e-10 | 25 |
| pancreas adenocarcinoma | 6.88e-10 | 2 |
| pancreatic carcinoma | 6.88e-10 | 2 |
| pancreatic ductal adenocarcinoma | 6.88e-10 | 2 |
Showing 1 to 10 of 12 entries
