FF:458-17B6: Difference between revisions

Revision as of 11:07, 28 November 2014

Name:	lung, embryo E16
Species:	Mouse (Mus musculus)
Library ID:	CNhs10998
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	lung
dev stage	16 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005297

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10998		CAGE		DRX009034		DRR009908

Accession ID Mm9

Library id		BAM		CTSS
CNhs10998		DRZ001333		DRZ002716

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10998

0	0
1	0
10	0
100	0
1000	0.0577
1001	0.0168
1002	0.0363
1003	0.0915
1004	0
1005	-0.0818
1006	-0.143
1007	0.109
1008	0
1009	0.213
101	0.0608
1010	0
1011	0
1012	0
1013	-0.128
1014	0.487
1015	0.154
1016	0.2
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.0916
1023	0
1024	0.0746
1025	1.121
1026	0
1027	0
1028	0
1029	0.283
103	0.147
1030	0
1031	0.391
1032	-0.00941
1033	0.0503
1034	0.0916
1035	0
1036	0.194
1037	0
1038	0.125
1039	-0.117
104	0
1040	0.253
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10998

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00173
MA0003.1	MA0003.1	0.492
MA0004.1	MA0004.1	0.467
MA0006.1	MA0006.1	0.881
MA0007.1	MA0007.1	0.594
MA0009.1	MA0009.1	0.748
MA0014.1	MA0014.1	0.442
MA0017.1	MA0017.1	4.21473e-5
MA0018.2	MA0018.2	0.0141
MA0019.1	MA0019.1	0.403
MA0024.1	MA0024.1	2.66236e-8
MA0025.1	MA0025.1	0.165
MA0027.1	MA0027.1	0.165
MA0028.1	MA0028.1	0.203
MA0029.1	MA0029.1	0.651
MA0030.1	MA0030.1	0.693
MA0031.1	MA0031.1	0.227
MA0035.2	MA0035.2	1.03672e-4
MA0038.1	MA0038.1	0.464
MA0039.2	MA0039.2	0.206
MA0040.1	MA0040.1	0.548
MA0041.1	MA0041.1	0.215
MA0042.1	MA0042.1	0.351
MA0043.1	MA0043.1	0.47
MA0046.1	MA0046.1	1.03235e-8
MA0047.2	MA0047.2	0.281
MA0048.1	MA0048.1	2.32686e-4
MA0050.1	MA0050.1	0.033
MA0051.1	MA0051.1	0.0061
MA0052.1	MA0052.1	0.0114
MA0055.1	MA0055.1	1.66934e-4
MA0057.1	MA0057.1	0.371
MA0058.1	MA0058.1	0.242
MA0059.1	MA0059.1	0.866
MA0060.1	MA0060.1	0.00453
MA0061.1	MA0061.1	0.14
MA0062.2	MA0062.2	0.859
MA0065.2	MA0065.2	2.31151e-4
MA0066.1	MA0066.1	0.149
MA0067.1	MA0067.1	0.0951
MA0068.1	MA0068.1	0.949
MA0069.1	MA0069.1	0.611
MA0070.1	MA0070.1	0.719
MA0071.1	MA0071.1	0.0169
MA0072.1	MA0072.1	0.00772
MA0073.1	MA0073.1	0.596
MA0074.1	MA0074.1	0.301
MA0076.1	MA0076.1	0.615
MA0077.1	MA0077.1	0.677
MA0078.1	MA0078.1	0.317
MA0079.2	MA0079.2	0.15
MA0080.2	MA0080.2	3.11992e-4
MA0081.1	MA0081.1	0.386
MA0083.1	MA0083.1	0.12
MA0084.1	MA0084.1	0.555
MA0087.1	MA0087.1	0.389
MA0088.1	MA0088.1	0.655
MA0090.1	MA0090.1	0.201
MA0091.1	MA0091.1	0.837
MA0092.1	MA0092.1	0.985
MA0093.1	MA0093.1	0.439
MA0099.2	MA0099.2	1.40392e-5
MA0100.1	MA0100.1	0.385
MA0101.1	MA0101.1	0.46
MA0102.2	MA0102.2	0.848
MA0103.1	MA0103.1	0.0143
MA0104.2	MA0104.2	0.316
MA0105.1	MA0105.1	0.178
MA0106.1	MA0106.1	0.137
MA0107.1	MA0107.1	0.355
MA0108.2	MA0108.2	0.00292
MA0111.1	MA0111.1	0.609
MA0112.2	MA0112.2	0.0578
MA0113.1	MA0113.1	0.425
MA0114.1	MA0114.1	8.26718e-6
MA0115.1	MA0115.1	0.00629
MA0116.1	MA0116.1	0.98
MA0117.1	MA0117.1	0.00681
MA0119.1	MA0119.1	0.465
MA0122.1	MA0122.1	0.733
MA0124.1	MA0124.1	0.533
MA0125.1	MA0125.1	0.902
MA0131.1	MA0131.1	0.305
MA0135.1	MA0135.1	0.166
MA0136.1	MA0136.1	4.77776e-4
MA0137.2	MA0137.2	0.13
MA0138.2	MA0138.2	8.09726e-6
MA0139.1	MA0139.1	0.928
MA0140.1	MA0140.1	0.0384
MA0141.1	MA0141.1	3.31588e-4
MA0142.1	MA0142.1	0.433
MA0143.1	MA0143.1	0.491
MA0144.1	MA0144.1	0.234
MA0145.1	MA0145.1	0.414
MA0146.1	MA0146.1	0.557
MA0147.1	MA0147.1	0.304
MA0148.1	MA0148.1	0.622
MA0149.1	MA0149.1	0.33
MA0150.1	MA0150.1	1.375e-5
MA0152.1	MA0152.1	0.568
MA0153.1	MA0153.1	4.75115e-5
MA0154.1	MA0154.1	0.148
MA0155.1	MA0155.1	0.162
MA0156.1	MA0156.1	0.203
MA0157.1	MA0157.1	0.34
MA0159.1	MA0159.1	0.00533
MA0160.1	MA0160.1	1.27878e-4
MA0162.1	MA0162.1	0.602
MA0163.1	MA0163.1	0.664
MA0164.1	MA0164.1	0.97
MA0258.1	MA0258.1	0.00455
MA0259.1	MA0259.1	0.63

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10998

Novel motif	Logo	P-value
1	1	0.159
10	10	0.701
100	100	0.587
101	101	0.964
102	102	0.63
103	103	0.857
104	104	0.429
105	105	0.749
106	106	0.54
107	107	0.806
108	108	0.618
109	109	0.223
11	11	0.16
110	110	0.983
111	111	0.145
112	112	0.239
113	113	0.469
114	114	0.0588
115	115	0.496
116	116	0.932
117	117	0.857
118	118	0.924
119	119	0.199
12	12	0.421
120	120	0.158
121	121	0.766
122	122	0.76
123	123	0.323
124	124	0.778
125	125	0.471
126	126	0.56
127	127	0.552
128	128	0.502
129	129	0.121
13	13	0.00651
130	130	0.0175
131	131	0.707
132	132	0.876
133	133	0.648
134	134	0.417
135	135	0.417
136	136	0.674
137	137	0.793
138	138	0.291
139	139	0.0143
14	14	0.291
140	140	0.778
141	141	0.497
142	142	0.867
143	143	0.55
144	144	0.836
145	145	0.672
146	146	0.108
147	147	0.596
148	148	0.154
149	149	0.84
15	15	0.203
150	150	0.341
151	151	0.0469
152	152	0.256
153	153	0.502
154	154	0.413
155	155	0.566
156	156	0.029
157	157	0.877
158	158	0.785
159	159	0.0259
160	160	0.134
161	161	0.822
162	162	0.932
163	163	0.0247
164	164	0.621
165	165	0.266
166	166	0.182
167	167	0.603
168	168	0.7
169	169	0.853
17	17	0.197
18	18	0.0242
19	19	0.734
2	2	0.409
20	20	0.397
21	21	0.36
22	22	0.674
23	23	0.159
24	24	0.819
25	25	0.149
26	26	0.0639
27	27	0.147
28	28	0.366
29	29	0.531
3	3	0.568
30	30	0.536
31	31	0.17
32	32	0.058
33	33	0.846
34	34	0.775
35	35	0.118
36	36	0.537
37	37	0.743
38	38	0.912
39	39	0.301
4	4	0.761
40	40	0.504
41	41	0.193
42	42	0.926
43	43	0.38
44	44	0.0318
45	45	0.26
46	46	0.569
47	47	0.353
48	48	0.208
49	49	0.229
5	5	0.606
50	50	0.442
51	51	0.694
52	52	0.947
53	53	0.698
54	54	0.229
55	55	0.814
56	56	0.374
57	57	0.85
58	58	0.464
59	59	0.439
6	6	0.629
60	60	0.815
61	61	0.602
62	62	0.0975
63	63	0.572
64	64	0.373
65	65	0.298
66	66	0.717
67	67	0.499
68	68	0.202
69	69	0.699
7	7	0.903
70	70	0.00497
71	71	0.452
72	72	0.0764
73	73	0.149
74	74	0.647
75	75	0.404
76	76	0.391
77	77	0.293
78	78	0.209
79	79	0.83
8	8	0.391
80	80	0.111
81	81	0.029
82	82	0.288
83	83	0.665
84	84	0.0745
85	85	0.0812
86	86	0.577
87	87	0.00203
88	88	0.338
89	89	0.213
9	9	0.886
90	90	0.0827
91	91	0.988
92	92	0.0724
93	93	0.728
94	94	0.423
95	95	0.65
96	96	0.402
97	97	0.173
98	98	0.343
99	99	0.879

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10998

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011357 mouse lung- embryo E16 sample

part_of relathionship
UBERON:0000310 breast

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002048 (lung)
0000310 (breast)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0001443 (chest)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000299 (mouse embryonic day 16 sample)
0011357 (mouse lung- embryo E16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:22539932..22539956,-!p1@Tcf21!1.95!227.65!Tcf21;;chr11:85699862..85699920,+!p1@Tbx4!1.93!84.96!Tbx4;;chr8:123608252..123608268,+!p1@Foxf1a!1.55!49.99!Foxf1a;;chr2:180069370..180069409,-!p1@Gata5!1.55!40.13!Gata5;;chr6:14851440..14851497,+!p2@Foxp2!1.54!79.33!Foxp2;;chr2:103264213..103264233,+!p1@Elf5!1.51!31.21!Elf5;;chr12:57636220..57636236,-!p3@Nkx2-1!1.50!30.28!Nkx2-1;;chr12:57636178..57636194,-!p2@Nkx2-1!1.44!26.75!Nkx2-1;;chr12:57636034..57636087,-!p1@Nkx2-1!1.44!26.75!Nkx2-1;;chr12:57636240..57636256,-!p4@Nkx2-1!1.38!23.00!Nkx2-1;;chr11:85646303..85646329,+!p1@Tbx2!1.35!138.47!Tbx2;;chr13:72101161..72101177,-!p2@Irx1!1.35!29.57!Irx1;;chr6:14851250..14851277,+!p4@Foxp2!1.33!25.82!Foxp2;;chr2:147871627..147871641,-!p1@Foxa2!1.33!20.18!Foxa2;;chr12:57637732..57637777,-!p5@Nkx2-1!1.30!18.78!Nkx2-1;;chr6:14853484..14853504,+!p14@Foxp2!1.29!18.54!Foxp2;;chr13:72766250..72766273,+!p1@Irx2!1.27!27.22!Irx2;;chr12:37835120..37835133,+!p2@Meox2!1.27!25.35!Meox2;;chr12:58646974..58647003,-!p1@Foxa1!1.27!23.23!Foxa1;;chr13:31717548..31717596,+!p1@Foxf2!1.25!33.33!Foxf2;;chr12:37835141..37835194,+!p1@Meox2!1.24!50.22!Meox2;;chr7:17647736..17647772,-!p1@Hif3a!1.21!53.74!Hif3a;;chr6:14851287..14851342,+!p1@Foxp2!1.21!49.52!Foxp2;;chr6:52154414..52154462,-!p1@Hoxa5!1.21!21.12!Hoxa5;;chr6:14851212..14851226,+!p12@Foxp2!1.19!14.32!Foxp2;;chr11:85646263..85646278,+!p2@Tbx2!1.17!35.20!Tbx2;;chr13:72766279..72766296,+!p2@Irx2!1.17!20.65!Irx2;;chr11:85703483..85703508,+!p2@Tbx4!1.16!13.38!Tbx4;;chr3:30408674..30408716,-!p2@Mecom!1.15!21.59!Mecom;;chr6:14851344..14851364,+!p6@Foxp2!1.15!15.96!Foxp2;;chr6:14851377..14851396,+!p10@Foxp2!1.14!12.67!Foxp2;;chr6:52154386..52154407,-!p2@Hoxa5!1.13!15.96!Hoxa5;;chr8:94325814..94325839,-!p2@Irx3!1.10!24.64!Irx3;;chr11:116196664..116196679,-!p1@Foxj1!1.07!16.66!Foxj1;;chr16:14705961..14705978,+!p2@Snai2!1.05!48.58!Snai2;;chr3:30408603..30408668,-!p1@Mecom!1.04!23.23!Mecom;;chr13:72101178..72101203,-!p1@Irx1!1.04!15.72!Irx1;;chr6:14851403..14851422,+!p8@Foxp2!1.04!9.86!Foxp2;;chr16:14705925..14705951,+!p1@Snai2!1.03!69.00!Snai2;;chr11:83664365..83664383,+!p1@Hnf1b!1.03!9.62!Hnf1b;;chr2:103264245..103264268,+!p2@Elf5!1.03!9.62!Elf5;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.97!14.32!Hoxb2;;chr2:167363692..167363710,+!p1@Snai1!0.95!99.74!Snai1;;chr11:85646341..85646352,+!p3@Tbx2!0.94!15.49!Tbx2;;chr11:96164821..96164865,+!p1@Hoxb5!0.94!7.74!Hoxb5;;chr10:126778916..126778974,-!p1@Gli1!0.91!16.66!Gli1;;chr16:22439654..22439676,-!p2@Etv5!0.90!43.18!Etv5;;chr8:94325847..94325869,-!p3@Irx3!0.89!11.03!Irx3;;chr6:14851547..14851571,+!p7@Foxp2!0.89!8.21!Foxp2;;chr18:53623836..53623839,+!p1@Prdm6!0.89!7.98!Prdm6;;chr5:120285144..120285160,+!p1@Tbx5!0.89!6.81!Tbx5;;chr8:94325321..94325366,-!p1@Irx3!0.88!16.66!Irx3;;chr12:57637882..57637924,-!p6@Nkx2-1!0.87!6.34!Nkx2-1;;chr16:22439681..22439698,-!p1@Etv5!0.86!116.41!Etv5;;chr13:72101141..72101158,-!p3@Irx1!0.85!7.74!Irx1;;chr8:94881733..94881790,+!p1@Irx5!0.84!12.20!Irx5;;chr11:85703335..85703350,+!p4@Tbx4!0.82!5.63!Tbx4;;chrX:48559194..48559210,-!p4@Mbnl3!0.81!7.04!Mbnl3;;chr11:96164905..96164919,+!p2@Hoxb5!0.81!5.40!Hoxb5;;chr13:31717597..31717613,+!p2@Foxf2!0.81!5.40!Foxf2;;chr10:12810631..12810649,+!p1@Plagl1!0.80!150.20!Plagl1;;chr5:77524250..77524300,-!p1@Hopx!0.80!116.88!Hopx;;chr18:11052642..11052659,+!p1@Gata6!0.80!29.10!Gata6;;chr12:3891810..3891829,+!p2@Dnmt3a!0.79!8.45!Dnmt3a;;chr12:57637700..57637717,-!p9@Nkx2-1!0.79!5.16!Nkx2-1;;chr1:137155026..137155042,-!p1@Elf3!0.77!31.21!Elf3;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.77!6.34!Hoxb2;;chr9:24578720..24578735,-!p1@Tbx20!0.77!4.93!Tbx20;;chr11:85646469..85646488,+!p5@Tbx2!0.76!7.51!Tbx2;;chr2:91034924..91034946,-!p2@Nr1h3!0.76!6.10!Nr1h3;;chr2:147871948..147871977,-!p3@Foxa2!0.76!4.69!Foxa2;;chr12:57637649..57637665,-!p8@Nkx2-1!0.76!4.69!Nkx2-1;;chr5:120120667..120120685,+!p3@Tbx3!0.74!9.15!Tbx3;;chr3:30408384..30408431,-!p4@Mecom!0.73!5.63!Mecom;;chr4:82151274..82151290,-!p3@Nfib!0.72!76.98!Nfib;;chr12:37835203..37835218,+!p3@Meox2!0.72!5.16!Meox2;;chr12:37835248..37835260,+!p4@Meox2!0.72!4.22!Meox2;;chr16:22439804..22439806,-!p4@Etv5!0.72!4.22!Etv5;;chr2:44968721..44968734,-!p6@Zeb2!0.71!17.13!Zeb2;;chr12:3891753..3891801,+!p4@Dnmt3a!0.71!7.04!Dnmt3a;;chr4:82151126..82151133,-!p8@Nfib!0.71!5.63!Nfib;;chr1:4486481..4486501,-!p2@Sox17!0.70!6.34!Sox17;;chr2:180069423..180069434,-!p2@Gata5!0.70!3.99!Gata5;;chr6:14851605..14851614,+!p17@Foxp2!0.70!3.99!Foxp2;;chr11:70043257..70043263,-!p1@Bcl6b!0.68!7.04!Bcl6b;;chr11:85646427..85646451,+!p4@Tbx2!0.68!7.04!Tbx2;;chr8:94325486..94325510,-!p4@Irx3!0.68!5.16!Irx3;;chr11:96180069..96180089,+!p3@Hoxb4!0.68!3.76!Hoxb4;;chr1:4483679..4483695,-!p1@Sox17!0.67!19.71!Sox17;;chr3:130813736..130813752,+!p3@Lef1!0.67!5.40!Lef1;;chr14:64562503..64562524,+!p1@Sox7!0.66!24.17!Sox7;;chr2:44968737..44968758,-!p2@Zeb2!0.66!23.47!Zeb2;;chr14:22807216..22807231,-!p3@Zfp503!0.66!6.57!Zfp503;;chr14:98568971..98569025,-!p1@Dach1!0.65!30.74!Dach1;;chr15:76287876..76287894,+!p1@Scx!0.65!22.06!Scx;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.65!6.57!Zfhx3;;chr11:96180045..96180059,+!p1@Hoxb4!0.65!5.16!Hoxb4;;chrX:45245679..45245702,-!p1@Smarca1!0.64!17.37!Smarca1;;chr6:52114821..52114828,-!p1@Hoxa2!0.64!5.40!Hoxa2;;chr14:98568761..98568814,-!p2@Dach1!0.63!26.29!Dach1;;chr19:26681672..26681716,+!p5@Smarca2!0.63!15.72!Smarca2;;chr14:56443806..56443848,+!p1@Nfatc4!0.63!7.28!Nfatc4;;chr11:18918434..18918489,-!p3@Meis1!0.63!5.63!Meis1;;chr11:85699562..85699575,+!p6@Tbx4!0.63!3.29!Tbx4;;chr8:94325779..94325791,-!p7@Irx3!0.63!3.29!Irx3;;chr4:82151178..82151262,-!p1@Nfib!0.62!152.31!Nfib;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.62!4.46!Hoxb2;;chr6:52141694..52141715,-!p1@Hoxa4!0.62!4.22!Hoxa4;;chr7:77505617..77505632,-!p1@Nr2f2!0.61!173.20!Nr2f2;;chr10:92773591..92773623,-!p1@Elk3!0.61!82.38!Elk3;;chr12:39506873..39506913,+!p1@Etv1!0.61!38.25!Etv1;;chr14:65568469..65568511,-!p2@Hmbox1!0.61!11.73!Hmbox1;;chr12:57637595..57637608,-!p7@Nkx2-1!0.61!3.05!Nkx2-1;;chr14:99697871..99697934,+!p1@Klf5!0.60!71.82!Klf5;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.60!5.63!Zfhx3;;chr6:99216488..99216534,-!p2@Foxp1!0.59!9.62!Foxp1;;chr4:126703093..126703158,+!p3@Sfpq!0.59!9.39!Sfpq;;chr2:35960919..35960954,-!p1@Lhx6!0.59!6.10!Lhx6;;chr9:71743854..71743909,-!p1@Tcf12!0.58!26.99!Tcf12;;chr5:120121446..120121461,+!p2@Tbx3!0.58!10.80!Tbx3;;chr4:13670571..13670625,+!p1@Runx1t1!0.58!8.92!Runx1t1;;chr15:37162796..37162828,+!p1@Grhl2!0.58!5.16!Grhl2;;chr12:37835219..37835230,+!p5@Meox2!0.58!2.82!Meox2;;chr5:98609885..98609900,+!p1@Prdm8!0.58!2.82!Prdm8;;chr18:52775562..52775650,+!p1@Zfp474!0.58!2.82!Zfp474;;chr8:94881639..94881650,+!p5@Irx5!0.58!2.82!Irx5;;chr14:22807107..22807119,-!p2@Zfp503!0.57!14.32!Zfp503;;chr18:11052606..11052633,+!p4@Gata6!0.57!7.98!Gata6;;chr17:47278081..47278103,+!p1@Trerf1!0.57!7.28!Trerf1;;chr5:77524304..77524315,-!p5@Hopx!0.57!6.57!Hopx;;chr3:34548909..34548927,+!p1@Sox2!0.57!5.16!Sox2;;chr1:4486453..4486470,-!p3@Sox17!0.57!3.76!Sox17;;chr4:122911086..122911112,+!p1@Heyl!0.56!38.49!Heyl;;chr7:52471143..52471186,+!p1@Tead2!0.56!34.97!Tead2;;chr19:19185671..19185693,-!p1@Rorb!0.56!7.28!Rorb;;chr4:82151653..82151706,-!p2@Nfib!0.55!89.65!Nfib;;chr4:82151148..82151159,-!p5@Nfib!0.55!8.68!Nfib;;chr10:20880698..20880717,-!p3@Myb!0.55!4.46!Myb;;chr5:120120834..120120845,+!p8@Tbx3!0.55!2.58!Tbx3;;chr5:120285161..120285176,+!p2@Tbx5!0.55!2.58!Tbx5;;chr13:31717775..31717788,+!p4@Foxf2!0.55!2.58!Foxf2;;chr13:72766234..72766243,+!p3@Irx2!0.55!2.58!Irx2;;chr12:58647114..58647128,-!p2@Foxa1!0.55!2.58!Foxa1;;chr18:55152206..55152251,-!p1@Zfp608!0.54!30.51!Zfp608;;chr12:36219645..36219730,-!p1@Ahr!0.54!30.28!Ahr;;chr11:52096804..52096896,-!p1@Tcf7!0.54!25.11!Tcf7;;chr12:28027561..28027591,-!p1@Sox11!0.54!20.18!Sox11;;chr4:126700722..126700753,+!p4@Sfpq!0.54!7.04!Sfpq;;chr1:170361730..170361769,-!p7@Pbx1!0.54!6.57!Pbx1;;chr6:52163319..52163342,-!p1@Hoxa3!0.54!3.99!Hoxa3;;chr2:181406327..181406350,-!p1@Sox18!0.53!95.28!Sox18;;chr14:22807083..22807104,-!p1@Zfp503!0.53!53.98!Zfp503;;chr18:55150011..55150059,-!p3@Zfp608!0.53!9.39!Zfp608;;chr18:55150248..55150308,-!p6@Zfp608!0.53!6.81!Zfp608;;chr10:119913278..119913298,-!p2@Hmga2!0.53!6.34!Hmga2;;chr11:96145450..96145517,+!p2@Hoxb7!0.53!3.99!Hoxb7;;chr4:126700650..126700678,+!p5@Sfpq!0.52!5.40!Sfpq;;chr5:120121169..120121171,+!p4@Tbx3!0.52!4.69!Tbx3;;chr2:30700788..30700824,+!p2@Prrx2!0.52!3.99!Prrx2;;chr1:138845748..138845766,-!p4@Nr5a2!0.52!3.29!Nr5a2;;chr2:17976799..17976829,+!p5@Mllt10!0.52!3.05!Mllt10;;chr11:83664334..83664353,+!p2@Hnf1b!0.52!2.35!Hnf1b;;chr11:101413151..101413207,-!p1@Brca1!0.51!27.93!Brca1;;chr18:65741358..65741415,+!p1@Zfp532!0.51!12.20!Zfp532;;chr15:37162834..37162849,+!p2@Grhl2!0.51!2.82!Grhl2;;chr2:44968512..44968530,-!p1@Zeb2!0.50!62.90!Zeb2;;chr11:18918959..18918976,-!p2@Meis1!0.50!38.25!Meis1;;chr16:95680889..95680991,-!p1@Erg!0.50!23.23!Erg;;chr1:170362040..170362113,-!p2@Pbx1!0.50!22.06!Pbx1;;chrX:48558950..48559016,-!p1@Mbnl3!0.50!8.45!Mbnl3;;chr4:154010940..154010962,-!p3@Prdm16!0.50!5.63!Prdm16;;chr11:101755669..101755686,-!p1@Meox1!0.50!4.46!Meox1;;chr18:79306603..79306620,-!p4@Setbp1!0.50!3.99!Setbp1;;chr11:52096750..52096772,-!p4@Tcf7!0.50!3.76!Tcf7;;chr7:17642018..17642045,-!p4@Hif3a!0.50!2.58!Hif3a;;chrX:109714331..109714347,+!p1@Zfp711!0.49!11.03!Zfp711;;chr8:87225670..87225697,+!p2@Lyl1!0.49!7.51!Lyl1;;chr17:32506357..32506377,-!p3@Wiz!0.49!5.16!Wiz;;chr17:37140628..37140631,+!p2@Zfp57!0.49!4.93!Zfp57;;chr16:18587076..18587106,-!p1@Tbx1!0.49!3.29!Tbx1;;chr8:111227455..111227464,+!p@chr8:111227455..111227464,+!0.49!2.82!Zfhx3;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.49!2.11!Foxl1;;chr13:31717671..31717682,+!p5@Foxf2!0.49!2.11!Foxf2;;chr13:31717614..31717628,+!p3@Foxf2!0.49!2.11!Foxf2;;chr4:133276801..133276891,-!p3@Arid1a!0.48!28.40!Arid1a;;chr12:12948633..12948651,-!p1@My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8219,-!p1@Tet1!0.17!7.28!Tet1;;chr17:28314341..28314394,+!p2@Zfp523!0.17!7.04!Zfp523;;chr7:134170660..134170711,-!p6@Maz!0.17!6.81!Maz;;chr8:79426176..79426275,+!p1@Nr3c2!0.17!5.87!Nr3c2;;chr13:67825201..67825277,-!p1@Zfp71-rs1!0.17!5.87!Zfp71-rs1;;chr13:44826095..44826185,+!p4@Jarid2!0.17!5.87!Jarid2;;chr7:28623579..28623631,+!p1@Zfp59!0.17!5.63!Zfp59;;chr17:4994697..4994730,+!p4@Arid1b!0.17!5.40!Arid1b;;chr7:26067242..26067273,+!p3@Cic!0.17!4.93!Cic;;chr8:72356532..72356611,+!p1@Pbx4!0.17!4.69!Pbx4;;chr9:21420744..21420755,+!p3@Smarca4!0.17!3.05!Smarca4;;chr2:91864300..91864379,-!p2@Creb3l1!0.17!3.05!Creb3l1;;chr6:133985971..133985991,+!p6@Etv6!0.17!2.82!Etv6;;chr6:124959016..124959061,+!p3@Zfp384!0.17!2.82!Zfp384;;chr5:139060915..139060929,-!p3@Zfp68!0.17!2.58!Zfp68;;chr13:37918094..37918119,+!p6@Rreb1!0.17!2.11!Rreb1;;chr4:97444563..97444572,+!p12@Nfia!0.17!1.88!Nfia;;chr2:169458838..169458859,+!p4@Tshz2!0.17!1.88!Tshz2;;chr12:85534720..85534751,-!p4@C130039O16Rik!0.17!1.64!C130039O16Rik;;chr11:90250944..90250982,-!p2@Hlf!0.17!1.41!Hlf;;chr5:3648045..3648074,-!p2@Gatad1!0.17!1.41!Gatad1;;chr9:63869834..63869849,-!p5@Smad6!0.17!1.41!Smad6;;chr9:21420812..21420815,+!p6@Smarca4!0.17!1.17!Smarca4;;chr13:64254502..64254515,-!p3@Zfp367!0.17!1.17!Zfp367;;chr1:165243379..165243402,-!p3@Prrx1!0.17!1.17!Prrx1;;chr2:44965761..44965785,-!p13@Zeb2!0.17!1.17!Zeb2;;chr5:38611621..38611635,-!p2@Zbtb49!0.17!1.17!Zbtb49;;chr5:120120981..120120992,+!p5@Tbx3!0.17!0.94!Tbx3;;chr1:64167889..64167898,-!p8@Klf7!0.17!0.94!Klf7;;chr1:93698068..93698085,+!p2@Twist2!0.17!0.70!Twist2;;chr15:40486458..40486467,+!p9@Zfpm2!0.17!0.70!Zfpm2;;chr13:78339382..78339420,-!p3@Nr2f1!0.17!0.70!Nr2f1;;chr10:127896295..127896304,+!p6@Smarcc2!0.17!0.70!Smarcc2;;chr18:69752608..69752625,+!p17@Tcf4!0.17!0.70!Tcf4;;chr15:81633116..81633125,+!p6@Tef!0.17!0.70!Tef;;chr17:35031631..35031645,+!p5@Zbtb12!0.17!0.47!Zbtb12;;chr18:5591424..5591444,+!p5@Zeb1!0.17!0.47!Zeb1;;chr16:18588291..18588301,-!p2@Tbx1!0.17!0.47!Tbx1;;chr16:95923706..95923717,+!p6@Ets2!0.17!0.47!Ets2;;chr17:26978449..26978458,-!p3@Nkx2-5!0.17!0.47!Nkx2-5;;chr16:25801993..25802014,+!p1@Trp63!0.17!0.47!Trp63;;chr19:37511111..37511115,+!p2@Hhex!0.17!0.47!Hhex;;chr2:105002682..105002691,+!p10@Wt1!0.17!0.47!Wt1;;chr1:4486594..4486612,-!p6@Sox17!0.17!0.47!Sox17;;chr2:115874845..115874865,-!p20@Meis2!0.17!0.47!Meis2;;chr2:169458593..169458603,+!p13@Tshz2!0.17!0.47!Tshz2;;chr1:138846079..138846103,-!p6@Nr5a2!0.17!0.47!Nr5a2;;chr2:104966933..104966966,+!p3@Wt1!0.17!0.47!Wt1;;chr2:103143315..103143328,-!p2@Ehf!0.17!0.47!Ehf;;chr4:108132386..108132400,+!p14@Zcchc11!0.17!0.47!Zcchc11;;chr4:53792566..53792578,+!p1@Tal2!0.17!0.47!Tal2;;chr2:74543202..74543213,+!p3@Hoxd8!0.17!0.47!Hoxd8;;chr4:32325928..32325939,+!p11@Bach2!0.17!0.47!Bach2;;chr4:153708892..153708904,-!p13@Prdm16!0.17!0.47!Prdm16;;chr3:29912271..29912291,-!p16@Mecom!0.17!0.47!Mecom;;chr3:130813724..130813733,+!p17@Lef1!0.17!0.47!Lef1;;chr3:130813756..130813767,+!p8@Lef1!0.17!0.47!Lef1;;chr4:154010313..154010324,-!p9@Prdm16!0.17!0.47!Prdm16;;chr4:135736707..135736724,+!p8@E2f2!0.17!0.47!E2f2;;chr3:58219238..58219246,+!p3@Tsc22d2!0.17!0.47!Tsc22d2;;chr3:66785181..66785199,-!p2@Shox2!0.17!0.47!Shox2;;chr4:97444086..97444093,+!p24@Nfia!0.17!0.47!Nfia;;chrX:70656436..70656464,+!p1@Zfp92!0.17!0.47!Zfp92;;chr8:81551868..81551877,+!p13@Zfp827!0.17!0.47!Zfp827;;chr9:63869510..63869530,-!p10@Smad6!0.17!0.47!Smad6;;chr9:8900409..8900425,+!p2@Pgr!0.17!0.47!Pgr;;chr8:87297330..87297365,-!p5@Nfix!0.17!0.47!Nfix;;chr8:72356644..72356653,+!p4@Pbx4!0.17!0.47!Pbx4;;chr11:62272200..62272221,-!p11@Ncor1!0.17!0.47!Ncor1;;chr11:100721492..100721499,+!p5@Stat5a!0.17!0.47!Stat5a;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs10998
-|library_id_phase_based=1:CNhs10998
+|library_id_phase_based=2:CNhs10998
 |name=lung, embryo E16
 |namespace=FANTOM5
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10998,LSID730,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.093239160485437,0,0,0,0,0.045779009027853,0.439981442219322,0,0.045779009027853,0,0,0.469736959581027,0,0,0,0,0,0,0.267125299749671,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477286662615577,0,0,0,0,0.00674845239749859,0.248246634160291,0.0437160023124796,-0.0538772578720172,0.557310413930821,-0.102734366953606,0,0,0,0,0,0,0,0,0,0,0.091558018055706,0,0.427063658097161,0,0,0,0,0,0,-0.0149527551336432,0,0,0.0500724391600648,0.224681675929109,0.111418856312247,-0.158091042771083,0.158218814092221,0,0.091558018055706,0.000582036488481652,0,0,0,0.0059946983204612,-0.0684834450080114,-0.102845675079968,0.0127264232157985,0,0,0,0,0,0,-0.035573296107003,0.180360892400137,-0.038315381597112,0.0594064379852074,0,0,0,0

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FF:458-17B6: Difference between revisions

From FANTOM5_SSTAR

Revision as of 11:07, 28 November 2014

CNhs10998

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0