FF:11776-124A3: Difference between revisions

Revision as of 09:49, 28 November 2014

Name:	CD41+ megakaryocyte cancer, donor2
Species:	Mouse (Mus musculus)
Library ID:	CNhs13213
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	megakaryocyte
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3LL-2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005513

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13213		CAGE		DRX008798		DRR009670

Accession ID Mm9

Library id		BAM		CTSS
CNhs13213		DRZ001095		DRZ002480

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13213

0	0
1	0
10	0
100	0
1000	0.00223
1001	-0.0749
1002	-0.116
1003	-0.105
1004	0
1005	0.0113
1006	-0.143
1007	-0.0726
1008	0
1009	-0.19
101	0.151
1010	0
1011	0.00595
1012	0
1013	-0.145
1014	-0.0874
1015	-0.167
1016	-0.421
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.393
1022	-0.237
1023	0
1024	-0.142
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.103
103	-0.0848
1030	0.148
1031	-0.831
1032	-0.397
1033	0
1034	0
1035	0
1036	0.491
1037	0
1038	-0.433
1039	-0.268
104	0
1040	-0.362
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13213

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00248
MA0003.1	MA0003.1	0.37
MA0004.1	MA0004.1	0.349
MA0006.1	MA0006.1	0.661
MA0007.1	MA0007.1	0.969
MA0009.1	MA0009.1	0.501
MA0014.1	MA0014.1	0.729
MA0017.1	MA0017.1	0.24
MA0018.2	MA0018.2	0.279
MA0019.1	MA0019.1	0.559
MA0024.1	MA0024.1	7.79132e-6
MA0025.1	MA0025.1	0.339
MA0027.1	MA0027.1	0.813
MA0028.1	MA0028.1	0.00192
MA0029.1	MA0029.1	0.579
MA0030.1	MA0030.1	0.269
MA0031.1	MA0031.1	0.825
MA0035.2	MA0035.2	0.00119
MA0038.1	MA0038.1	0.696
MA0039.2	MA0039.2	0.659
MA0040.1	MA0040.1	0.5
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.906
MA0043.1	MA0043.1	0.117
MA0046.1	MA0046.1	1.74447e-5
MA0047.2	MA0047.2	0.879
MA0048.1	MA0048.1	0.18
MA0050.1	MA0050.1	4.11291e-4
MA0051.1	MA0051.1	0.00337
MA0052.1	MA0052.1	4.82069e-4
MA0055.1	MA0055.1	0.066
MA0057.1	MA0057.1	0.782
MA0058.1	MA0058.1	0.361
MA0059.1	MA0059.1	0.0654
MA0060.1	MA0060.1	0.0699
MA0061.1	MA0061.1	0.00451
MA0062.2	MA0062.2	5.53273e-7
MA0065.2	MA0065.2	0.21
MA0066.1	MA0066.1	0.116
MA0067.1	MA0067.1	0.615
MA0068.1	MA0068.1	0.789
MA0069.1	MA0069.1	0.558
MA0070.1	MA0070.1	0.389
MA0071.1	MA0071.1	0.762
MA0072.1	MA0072.1	0.831
MA0073.1	MA0073.1	0.921
MA0074.1	MA0074.1	0.847
MA0076.1	MA0076.1	0.0055
MA0077.1	MA0077.1	0.382
MA0078.1	MA0078.1	0.871
MA0079.2	MA0079.2	0.0284
MA0080.2	MA0080.2	1.39677e-9
MA0081.1	MA0081.1	0.0426
MA0083.1	MA0083.1	0.0169
MA0084.1	MA0084.1	0.656
MA0087.1	MA0087.1	0.287
MA0088.1	MA0088.1	0.111
MA0090.1	MA0090.1	0.0362
MA0091.1	MA0091.1	0.304
MA0092.1	MA0092.1	0.956
MA0093.1	MA0093.1	0.396
MA0099.2	MA0099.2	0.873
MA0100.1	MA0100.1	0.0397
MA0101.1	MA0101.1	0.00889
MA0102.2	MA0102.2	0.91
MA0103.1	MA0103.1	0.753
MA0104.2	MA0104.2	0.203
MA0105.1	MA0105.1	3.24651e-5
MA0106.1	MA0106.1	0.392
MA0107.1	MA0107.1	0.0247
MA0108.2	MA0108.2	0.0208
MA0111.1	MA0111.1	0.836
MA0112.2	MA0112.2	0.0103
MA0113.1	MA0113.1	0.344
MA0114.1	MA0114.1	0.638
MA0115.1	MA0115.1	0.794
MA0116.1	MA0116.1	0.00428
MA0117.1	MA0117.1	0.615
MA0119.1	MA0119.1	0.38
MA0122.1	MA0122.1	0.828
MA0124.1	MA0124.1	0.85
MA0125.1	MA0125.1	0.0722
MA0131.1	MA0131.1	0.415
MA0135.1	MA0135.1	0.535
MA0136.1	MA0136.1	2.10337e-6
MA0137.2	MA0137.2	0.453
MA0138.2	MA0138.2	0.0264
MA0139.1	MA0139.1	0.378
MA0140.1	MA0140.1	6.42153e-24
MA0141.1	MA0141.1	0.377
MA0142.1	MA0142.1	0.0789
MA0143.1	MA0143.1	0.174
MA0144.1	MA0144.1	0.585
MA0145.1	MA0145.1	0.638
MA0146.1	MA0146.1	0.421
MA0147.1	MA0147.1	0.145
MA0148.1	MA0148.1	0.987
MA0149.1	MA0149.1	0.055
MA0150.1	MA0150.1	0.0168
MA0152.1	MA0152.1	0.126
MA0153.1	MA0153.1	9.39374e-4
MA0154.1	MA0154.1	0.0238
MA0155.1	MA0155.1	0.314
MA0156.1	MA0156.1	2.47307e-7
MA0157.1	MA0157.1	0.951
MA0159.1	MA0159.1	0.068
MA0160.1	MA0160.1	0.743
MA0162.1	MA0162.1	0.367
MA0163.1	MA0163.1	9.11967e-4
MA0164.1	MA0164.1	0.413
MA0258.1	MA0258.1	0.0676
MA0259.1	MA0259.1	0.252

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13213

Novel motif	Logo	P-value
1	1	0.096
10	10	0.0223
100	100	0.454
101	101	0.794
102	102	0.79
103	103	0.0314
104	104	0.931
105	105	0.751
106	106	0.36
107	107	0.868
108	108	0.664
109	109	0.07
11	11	0.168
110	110	0.0505
111	111	0.0382
112	112	0.0374
113	113	0.728
114	114	0.717
115	115	0.874
116	116	0.868
117	117	6.14439e-4
118	118	0.121
119	119	0.575
12	12	0.685
120	120	0.953
121	121	0.211
122	122	0.997
123	123	0.244
124	124	0.625
125	125	0.214
126	126	0.291
127	127	0.303
128	128	0.463
129	129	0.189
13	13	0.00676
130	130	0.885
131	131	0.686
132	132	0.173
133	133	0.614
134	134	0.22
135	135	0.462
136	136	0.981
137	137	0.349
138	138	0.615
139	139	0.498
14	14	0.86
140	140	0.625
141	141	0.811
142	142	0.685
143	143	0.182
144	144	0.937
145	145	0.0259
146	146	0.866
147	147	0.981
148	148	0.104
149	149	0.417
15	15	0.053
150	150	0.362
151	151	0.322
152	152	0.404
153	153	0.602
154	154	0.664
155	155	0.247
156	156	1.12984e-116
157	157	0.755
158	158	0.0634
159	159	0.719
160	160	0.662
161	161	0.041
162	162	0.664
163	163	0.609
164	164	0.047
165	165	0.336
166	166	0.268
167	167	0.106
168	168	0.651
169	169	0.256
17	17	0.443
18	18	0.21
19	19	0.874
2	2	0.156
20	20	0.0186
21	21	0.385
22	22	0.894
23	23	0.119
24	24	0.626
25	25	0.194
26	26	0.00789
27	27	0.765
28	28	0.333
29	29	0.0159
3	3	0.0395
30	30	0.507
31	31	0.88
32	32	0.927
33	33	0.207
34	34	0.863
35	35	0.408
36	36	0.0305
37	37	0.172
38	38	0.521
39	39	0.734
4	4	0.875
40	40	0.156
41	41	0.534
42	42	0.0798
43	43	0.16
44	44	0.554
45	45	0.595
46	46	0.137
47	47	0.138
48	48	0.227
49	49	0.101
5	5	0.00292
50	50	0.856
51	51	0.767
52	52	0.856
53	53	0.528
54	54	0.816
55	55	0.187
56	56	0.665
57	57	0.296
58	58	0.38
59	59	0.543
6	6	0.766
60	60	0.431
61	61	0.387
62	62	0.155
63	63	0.599
64	64	0.613
65	65	0.544
66	66	0.205
67	67	0.447
68	68	0.284
69	69	0.944
7	7	0.0685
70	70	0.175
71	71	0.0144
72	72	0.259
73	73	0.287
74	74	0.795
75	75	0.0115
76	76	0.0846
77	77	0.568
78	78	0.0369
79	79	0.692
8	8	0.0264
80	80	0.0343
81	81	0.507
82	82	0.695
83	83	0.16
84	84	0.453
85	85	0.574
86	86	0.474
87	87	0.68
88	88	0.565
89	89	0.7
9	9	0.983
90	90	0.0741
91	91	0.332
92	92	0.453
93	93	0.615
94	94	0.159
95	95	0.101
96	96	0.284
97	97	0.869
98	98	0.265
99	99	0.533

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13213

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011131 mouse CD41-positive megakaryocyte cancer sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000556 (megakaryocyte)
0002027 (CD9-positive, CD41-positive megakaryocyte cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0011131 (mouse CD41-positive megakaryocyte cancer sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002006 (Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!2.47!291.16!Klf1;;chr15:103085660..103085681,-!p1@Nfe2!2.20!232.24!Nfe2;;chr7:122989594..122989626,-!p1@Sox6!2.17!147.60!Sox6;;chr2:28477452..28477483,-!p1@Gfi1b!2.11!155.91!Gfi1b;;chr4:114732112..114732158,+!p1@Tal1!2.08!252.89!Tal1;;chr9:96159147..96159204,+!p2@Tfdp2!2.00!180.20!Tfdp2;;chr15:103082088..103082136,-!p2@Nfe2!1.95!88.89!Nfe2;;chrX:7544943..7545001,-!p1@Gata1!1.92!83.01!Gata1;;chr7:122989632..122989668,-!p2@Sox6!1.85!70.26!Sox6;;chr11:11584970..11585030,+!p2@Ikzf1!1.81!89.09!Ikzf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.78!74.92!Zbtb11;;chr15:103085690..103085710,-!p3@Nfe2!1.73!57.71!Nfe2;;chr9:51021788..51021802,+!p1@Pou2af1!1.72!60.95!Pou2af1;;chr4:135728581..135728668,+!p1@E2f2!1.62!186.48!E2f2;;chr10:88145766..88145770,-!p1@Spic!1.60!50.62!Spic;;chr9:96159225..96159249,+!p5@Tfdp2!1.60!42.72!Tfdp2;;chr7:51787434..51787448,-!p1@Spib!1.58!52.44!Spib;;chr1:38721792..38721845,-!p1@Aff3!1.58!45.35!Aff3;;chr4:87452200..87452229,-!p2@Mllt3!1.54!70.26!Mllt3;;chr4:44723559..44723593,-!p1@Pax5!1.54!34.02!Pax5;;chr8:87225670..87225697,+!p2@Lyl1!1.53!93.54!Lyl1;;chr4:44723520..44723544,-!p2@Pax5!1.48!29.36!Pax5;;chr9:96159116..96159130,+!p6@Tfdp2!1.44!32.80!Tfdp2;;chr13:30841099..30841116,+!p1@Irf4!1.41!38.47!Irf4;;chr10:79884592..79884621,-!p5@Tcf3!1.41!24.50!Tcf3;;chr6:99216488..99216534,-!p2@Foxp1!1.37!61.75!Foxp1;;chr4:135728181..135728203,+!p2@E2f2!1.37!29.76!E2f2;;chr4:114729957..114730012,+!p3@Tal1!1.37!22.47!Tal1;;chr4:87452180..87452196,-!p3@Mllt3!1.33!39.48!Mllt3;;chr9:96159133..96159145,+!p9@Tfdp2!1.33!20.25!Tfdp2;;chr11:11585912..11585950,+!p6@Ikzf1!1.32!25.31!Ikzf1;;chr8:87225702..87225726,+!p3@Lyl1!1.31!38.88!Lyl1;;chr9:96159210..96159221,+!p10@Tfdp2!1.27!17.62!Tfdp2;;chr8:124806048..124806094,+!p1@Zfpm1!1.25!149.83!Zfpm1;;chr16:92826249..92826325,-!p1@Runx1!1.24!39.69!Runx1;;chr11:98407264..98407295,-!p1@Ikzf3!1.24!16.40!Ikzf3;;chr4:135728473..135728494,+!p5@E2f2!1.23!16.00!E2f2;;chr11:120491440..120491474,-!p3@Mafg!1.20!21.66!Mafg;;chr7:122989676..122989687,-!p8@Sox6!1.19!14.38!Sox6;;chr11:98407234..98407259,-!p2@Ikzf3!1.16!13.36!Ikzf3;;chr5:65203599..65203617,+!p8@Klf3!1.14!21.26!Klf3;;chr8:124806017..124806040,+!p2@Zfpm1!1.13!135.25!Zfpm1;;chr2:162880387..162880413,+!p1@Mybl2!1.13!78.56!Mybl2;;chr11:11586218..11586285,+!p1@Ikzf1!1.13!39.89!Ikzf1;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!1.12!17.01!Carhsp1;;chr2:166868994..166869023,-!p7@Znfx1!1.11!11.95!Znfx1;;chr7:148452314..148452329,-!p1@Irf7!1.10!80.18!Irf7;;chr4:87452236..87452249,-!p9@Mllt3!1.10!11.54!Mllt3;;chr5:104183477..104183548,+!p6@Aff1!1.08!22.07!Aff1;;chr6:86619104..86619119,-!p1@Mxd1!1.06!85.44!Mxd1;;chr4:44723633..44723646,-!p3@Pax5!1.06!10.53!Pax5;;chr13:112476264..112476282,+!p3@Mier3!1.02!13.57!Mier3;;chr4:114730254..114730276,+!p2@Tal1!1.01!11.74!Tal1;;chr1:87546583..87546595,+!p1@Sp100!1.00!12.96!Sp100;;chr4:114732159..114732166,+!p6@Tal1!1.00!8.91!Tal1;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!0.99!8.71!Sp140;;chr7:56136362..56136400,-!p1@E2f8!0.98!56.69!E2f8;;chr4:114730015..114730042,+!p7@Tal1!0.98!8.50!Tal1;;chr2:162880327..162880385,+!p2@Mybl2!0.97!57.71!Mybl2;;chr15:103085802..103085817,-!p4@Nfe2!0.96!10.33!Nfe2;;chr6:86619130..86619158,-!p2@Mxd1!0.95!116.63!Mxd1;;chr1:52065508..52065522,+!p2@Stat4!0.95!9.31!Stat4;;chr11:98407370..98407395,-!p3@Ikzf3!0.95!7.90!Ikzf3;;chr10:20880629..20880683,-!p1@Myb!0.93!22.47!Myb;;chr8:123260252..123260264,+!p1@Irf8!0.92!53.45!Irf8;;chr8:87225329..87225396,+!p1@Lyl1!0.91!27.74!Lyl1;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!0.91!7.09!Sp140;;chr11:16908650..16908690,-!p1@Plek!0.88!42.72!Plek;;chr1:87546602..87546617,+!p2@Sp100!0.88!7.90!Sp100;;chr9:96159427..96159432,+!p11@Tfdp2!0.88!7.90!Tfdp2;;chr10:20880731..20880775,-!p2@Myb!0.87!13.97!Myb;;chr14:47896467..47896523,-!p1@Wdhd1!0.86!80.99!Wdhd1;;chr11:11585678..11585745,+!p5@Ikzf1!0.86!9.31!Ikzf1;;chr14:56223010..56223067,+!p1@Irf9!0.84!49.40!Irf9;;chr13:55431084..55431137,-!p1@Mxd3!0.84!49.00!Mxd3;;chr7:25917492..25917512,-!p1@Pou2f2!0.84!10.33!Pou2f2;;chr1:52065530..52065548,+!p3@Stat4!0.82!5.67!Stat4;;chr3:130815703..130815721,+!p2@Lef1!0.81!6.68!Lef1;;chr1:87546572..87546579,+!p4@Sp100!0.81!5.47!Sp100;;chr1:52176406..52176433,+!p2@Stat1!0.80!13.77!Stat1;;chr5:65203575..65203589,+!p11@Klf3!0.80!6.48!Klf3;;chr15:103083245..103083260,-!p7@Nfe2!0.80!5.26!Nfe2;;chr10:126727842..126727859,+!p1@Ddit3!0.79!161.98!Ddit3;;chr14:79915425..79915501,+!p1@Elf1!0.79!49.81!Elf1;;chr2:173044380..173044432,-!p1@Zbp1!0.79!13.16!Zbp1;;chr4:44723835..44723849,-!p4@Pax5!0.78!5.06!Pax5;;chr11:23980664..23980706,+!p2@Bcl11a!0.76!22.47!Bcl11a;;chr17:56970481..56970551,-!p2@Rfx2!0.76!16.20!Rfx2;;chr17:56970339..56970428,-!p1@Rfx2!0.76!16.00!Rfx2;;chr4:63064364..63064384,-!p1@Akna!0.76!14.98!Akna;;chr5:140267476..140267493,+!p1@Mafk!0.75!28.35!Mafk;;chr10:80598968..80599012,+!p5@Zbtb7a!0.75!6.28!Zbtb7a;;chr7:20162663..20162678,+!p1@Zfp296!0.75!6.28!Zfp296;;chr19:53384910..53384937,+!p3@Mxi1!0.74!13.77!Mxi1;;chr4:134708451..134708469,+!p1@Runx3!0.74!8.30!Runx3;;chr5:104183579..104183600,+!p9@Aff1!0.74!5.26!Aff1;;chr11:5420655..5420659,+!p3@Xbp1!0.74!4.45!Xbp1;;chr6:83301229..83301242,+!p3@Bola3!0.74!4.45!Bola3;;chr11:101413151..101413207,-!p1@Brca1!0.73!47.18!Brca1;;chr10:30522690..30522752,-!p2@Ncoa7!0.73!29.76!Ncoa7;;chr8:47825203..47825225,+!p3@Irf2!0.73!6.07!Irf2;;chr5:65194720..65194738,+!p2@Klf3!0.72!25.92!Klf3;;chr7:31206743..31206761,+!p1@Nfkbid!0.72!6.07!Nfkbid;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.71!6.88!Ncoa4;;chr6:29476690..29476724,+!p1@Irf5!0.70!21.06!Irf5;;chr17:45692676..45692695,+!p2@Nfkbie!0.70!8.91!Nfkbie;;chr3:135271185..135271254,-!p4@Nfkb1!0.70!7.90!Nfkb1;;chr1:52065454..52065495,+!p1@Stat4!0.70!7.09!Stat4;;chr2:162880418..162880429,+!p4@Mybl2!0.70!5.26!Mybl2;;chr2:91034924..91034946,-!p2@Nr1h3!0.70!5.06!Nr1h3;;chr4:134708909..134708939,+!p3@Runx3!0.70!4.05!Runx3;;chr11:23977565..23977612,+!p5@Bcl11a!0.69!9.31!Bcl11a;;chr11:52096066..52096081,-!p2@Tcf7!0.69!4.86!Tcf7;;chr11:44430812..44430838,+!p1@Ebf1!0.67!41.30!Ebf1;;chr2:90936901..90936945,+!p1@Sfpi1!0.67!21.87!Sfpi1;;chr1:181733959..181733977,-!p4@Ahctf1!0.67!4.86!Ahctf1;;chr1:38721767..38721778,-!p5@Aff3!0.67!3.64!Aff3;;chr8:125921689..125921725,+!p3@Tcf25!0.67!3.64!Tcf25;;chr8:107821563..107821642,+!p1@E2f4!0.66!116.63!E2f4;;chr11:23978022..23978076,+!p1@Bcl11a!0.66!90.30!Bcl11a;;chr11:23978078..23978096,+!p4@Bcl11a!0.66!12.15!Bcl11a;;chr7:56136349..56136360,-!p5@E2f8!0.66!4.66!E2f8;;chr10:30522881..30522960,-!p1@Ncoa7!0.65!48.80!Ncoa7;;chr6:28211956..28211967,-!p2@Zfp800!0.65!8.10!Zfp800;;chr11:23978111..23978134,+!p3@Bcl11a!0.65!7.90!Bcl11a;;chr13:112476296..112476308,+!p4@Mier3!0.65!4.05!Mier3;;chrX:7156792..7156811,+!p1@Foxp3!0.65!3.44!Foxp3;;chr18:70727922..70728052,+!p1@Mbd2!0.64!141.94!Mbd2;;chr13:83663902..83663927,+!p1@Mef2c!0.64!96.38!Mef2c;;chr5:104183219..104183236,+!p2@Aff1!0.64!26.73!Aff1;;chr8:108583550..108583595,+!p2@Nfatc3!0.64!17.62!Nfatc3;;chr4:124805061..124805087,-!p1@Zc3h12a!0.64!11.95!Zc3h12a;;chr9:32348943..32349001,-!p1@Fli1!0.63!31.38!Fli1;;chr10:30523091..30523182,-!p4@Ncoa7!0.63!12.76!Ncoa7;;chr17:51971932..51971958,-!p2@Satb1!0.63!4.66!Satb1;;chr11:23977742..23977794,+!p6@Bcl11a!0.63!4.25!Bcl11a;;chr11:98407340..98407359,-!p4@Ikzf3!0.63!3.24!Ikzf3;;chr11:100683839..100683890,-!p2@Stat5b!0.62!8.30!Stat5b;;chr6:72849280..72849297,-!p6@Kcmf1!0.62!6.88!Kcmf1;;chr13:64254457..64254497,-!p1@Zfp367!0.61!16.20!Zfp367;;chr2:166888058..166888105,-!p2@Znfx1!0.61!11.54!Znfx1;;chr4:135728282..135728310,+!p4@E2f2!0.60!3.44!E2f2;;chr1:52176315..52176343,+!p1@Stat1!0.59!50.21!Stat1;;chr11:23670953..23671028,-!p1@Rel!0.59!19.84!Rel;;chr2:173044357..173044377,-!p2@Zbp1!0.59!4.45!Zbp1;;chr11:11590140..11590187,+!p3@Ikzf1!0.59!3.64!Ikzf1;;chr15:80085920..80085941,+!p1@Atf4!0.58!401.91!Atf4;;chr3:51144550..51144603,-!p2@Elf2!0.58!52.24!Elf2;;chr11:11590117..11590138,+!p4@Ikzf1!0.58!2.83!Ikzf1;;chr6:83301243..83301258,+!p2@Bola3!0.58!2.83!Bola3;;chr4:102791976..102792008,+!p2@Mier1!0.57!36.85!Mier1;;chrX:137077716..137077734,-!p1@Tsc22d3!0.57!23.69!Tsc22d3;;chr18:74375772..74375799,+!p2@Cxxc1!0.57!9.31!Cxxc1;;chr10:41995430..41995458,-!p3@Foxo3!0.57!8.30!Foxo3;;chr7:56136974..56136989,-!p4@E2f8!0.57!4.86!E2f8;;chr8:47825166..47825178,+!p2@Irf2!0.57!4.66!Irf2;;chr2:17977331..17977360,+!p11@Mllt10!0.57!3.04!Mllt10;;chr1:52176378..52176401,+!p3@Stat1!0.56!9.31!Stat1;;chr8:124806111..124806122,+!p3@Zfpm1!0.56!3.44!Zfpm1;;chr5:67698217..67698253,+!p2@Slc30a9!0.55!65.20!Slc30a9;;chr4:32325688..32325777,+!p1@Bach2!0.55!27.94!Bach2;;chr11:100721761..100721851,+!p1@Stat5a!0.55!23.08!Stat5a;;chr7:56136402..56136420,-!p3@E2f8!0.55!5.26!E2f8;;chr11:102178005..102178022,-!p8@Ubtf!0.55!4.66!Ubtf;;chr5:65194752..65194769,+!p1@Klf3!0.54!106.50!Klf3;;chr10:41996494..41996549,-!p1@Foxo3!0.54!53.66!Foxo3;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.54!18.02!Zbtb11;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.54!15.39!C130039O16Rik;;chr14:79881330..79881415,+!p3@Elf1!0.54!9.92!Elf1;;chr10:20880698..20880717,-!p3@Myb!0.54!4.25!Myb;;chr13:64254502..64254515,-!p3@Zfp367!0.54!4.05!Zfp367;;chr11:44431369..44431389,+!p8@Ebf1!0.54!3.44!Ebf1;;chr17:84105231..84105253,+!p7@Mta3!0.54!2.83!Mta3;;chr5:134720044..134720103,-!p6@Gtf2i!0.54!2.43!Gtf2i;;chr6:29479277..29479296,+!p2@Irf5!0.54!2.43!Irf5;;chr6:29479308..29479325,+!p3@Irf5!0.54!2.43!Irf5;;chr4:87452167..87452178,-!p8@Mllt3!0.54!2.43!Mllt3;;chr4:44717334..44717367,-!p5@Pax5!0.54!2.43!Pax5;;chr14:32978944..32978953,+!p8@Gm6768,p8@Ncoa4!0.54!2.43!Ncoa4;;chr6:83299445..83299490,+!p1@Bola3!0.53!129.99!Bola3;;chr5:104183173..104183207,+!p1@Aff1!0.53!40.70!Aff1;;chr17:25152743..25152766,-!p2@Cramp1l!0.53!12.15!Cramp1l;;chr11:44430788..44430804,+!p3@Ebf1!0.53!7.09!Ebf1;;chr3:51144740..51144743,-!p7@Elf2!0.53!4.45!Elf2;;chr6:47544966..47545046,-!p1@Ezh2!0.52!63.37!Ezh2;;chr1:181733737..181733755,-!p2@Ahctf1!0.52!8.91!Ahctf1;;chr5:138187181..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2640350,-!p17@Zfp219!0.08!0.20!Zfp219;;chr14:52640336..52640341,-!p20@Zfp219!0.08!0.20!Zfp219;;chr13:112476407..112476418,+!p6@Mier3!0.08!0.20!Mier3;;chr12:81214217..81214219,-!p2@Zfp36l1!0.08!0.20!Zfp36l1;;chr12:86939997..86940040,+!p4@Jdp2!0.08!0.20!Jdp2;;chr4:107356181..107356197,-!p2@Dmrtb1!0.08!0.20!Dmrtb1;;chr4:63064279..63064293,-!p7@Akna!0.08!0.20!Akna;;chr3:135271325..135271343,-!p15@Nfkb1!0.08!0.20!Nfkb1;;chr5:104182741..104182752,+!p20@Aff1!0.08!0.20!Aff1;;chr3:130813833..130813848,+!p16@Lef1!0.08!0.20!Lef1;;chr5:104182999..104183006,+!p18@Aff1!0.08!0.20!Aff1;;chr3:130813586..130813604,+!p7@Lef1!0.08!0.20!Lef1;;chr3:9250036..9250047,+!p@chr3:9250036..9250047,+!0.08!0.20!Zbtb10;;chr2:73110004..73110016,+!p2@Sp9!0.08!0.20!Sp9;;chr3:89191004..89191022,-!p4@Zbtb7b!0.08!0.20!Zbtb7b;;chr4:133801418..133801425,-!p4@Zfp593!0.08!0.20!Zfp593;;chr4:135728343..135728357,+!p9@E2f2!0.08!0.20!E2f2;;chr4:13678482..13678505,+!p9@Runx1t1!0.08!0.20!Runx1t1;;chr3:130815472..130815497,+!p6@Lef1!0.08!0.20!Lef1;;chr3:99057677..99057730,+!p2@Tbx15!0.08!0.20!Tbx15;;chr1:186556495..186556506,-!p8@Hlx!0.08!0.20!Hlx;;chr2:168780729..168780740,-!p3@LOC100502777,p3@Zfp64!0.08!0.20!Zfp64;;chr1:169528823..169528860,+!p5@Rxrg!0.08!0.20!Rxrg;;chr2:163028876..163028885,+!p7@Tox2!0.08!0.20!Tox2;;chr1:87497590..87497593,+!p9@Gm2427,p9@Sp140!0.08!0.20!Sp140;;chr1:194982959..194983007,+!p5@Irf6!0.08!0.20!Irf6;;chr6:64992569..64992656,+!p1@Smarcad1!0.07!30.98!Smarcad1;;chr17:33766023..33766059,+!p1@Zfp414!0.07!15.59!Zfp414;;chr7:134565516..134565573,-!p1@Zfp688!0.07!11.54!Zfp688;;chr7:134170496..134170539,-!p4@Maz!0.07!8.71!Maz;;chr2:128793119..128793179,+!p1@Zc3h6!0.07!8.10!Zc3h6;;chr8:72520015..72520053,-!p2@Gatad2a!0.07!6.28!Gatad2a;;chr5:31754800..31754825,+!p2@Zfp512!0.07!4.66!Zfp512;;chr10:70700755..70700772,-!p2@Tfam!0.07!4.25!Tfam;;chr17:34784073..34784118,+!p2@Atf6b!0.07!3.44!Atf6b;;chr3:94641302..94641341,+!p3@Pogz!0.07!3.44!Pogz;;chr9:20385740..20385777,+!p2@Zfp846!0.07!3.04!Zfp846;;chr1:15795704..15795713,+!p2@Terf1!0.07!1.82!Terf1;;chr13:67433461..67433489,-!p2@Zfp595!0.07!1.82!Zfp595;;chr10:67000609..67000625,+!p1@Egr2!0.07!1.62!Egr2;;chr5:22939771..22939797,+!p4@Mll5!0.07!1.42!Mll5;;chr13:55206625..55206636,+!p2@Zfp346!0.07!1.21!Zfp346;;chr9:72380594..72380635,+!p3@Rfx7!0.07!1.01!Rfx7;;chr12:16817785..16817796,+!p2@E2f6!0.07!0.81!E2f6;;chr11:98602203..98602266,+!p4@Thra!0.07!0.81!Thra;;chr10:126725815..126725830,-!p10@Mbd6!0.07!0.40!Mbd6;;chr15:61818859..61818873,+!p8@Myc!0.07!0.40!Myc;;chr4:133312695..133312709,-!p19@Arid1a!0.07!0.40!Arid1a;;chr6:52167459..52167492,-!p1@Hoxa7!0.07!0.40!Hoxa7;;chr6:52664406..52664434,+!p3@Tax1bp1!0.07!0.40!Tax1bp1;;chr1:69732682..69732719,-!p4@Ikzf2!0.07!0.40!Ikzf2;;chr10:116661536..116661555,-!p1@Yeats4!0.06!58.52!Yeats4;;chr5:147760216..147760292,+!p1@Gtf3a!0.06!46.77!Gtf3a;;chr3:90097085..90097175,+!p1@Gatad2b!0.06!40.50!Gatad2b;;chr12:112277544..112277610,+!p1@Rcor1!0.06!38.27!Rcor1;;chr15:25914152..25914206,+!p1@Zfp622!0.06!24.30!Zfp622;;chr7:30553587..30553661,+!p1@Zfp84!0.06!24.09!Zfp84;;chr7:52253030..52253070,+!p1@Irf3!0.06!22.27!Irf3;;chr1:72629819..72629856,+!p1@Smarcal1!0.06!18.83!Smarcal1;;chr12:16817746..16817784,+!p1@E2f6!0.06!17.41!E2f6;;chr15:76181777..76181802,+!p2@Maf1!0.06!16.20!Maf1;;chr2:73730596..73730612,-!p3@Atf2,p3@LOC100047997!0.06!12.35!Atf2;;chr6:47870583..47870635,+!p1@Zfp212!0.06!12.15!Zfp212;;chr7:26006436..26006488,+!p1@Zfp526!0.06!11.14!Zfp526;;chr4:116480137..116480178,-!p1@Toe1!0.06!10.73!Toe1;;chr17:24806629..24806672,+!p1@Zfp598!0.06!10.73!Zfp598;;chr6:124959279..124959335,+!p1@Zfp384!0.06!9.52!Zfp384;;chr3:94758041..94758142,+!p1@Rfx5!0.06!8.71!Rfx5;;chr5:31754831..31754876,+!p1@Zfp512!0.06!6.88!Zfp512;;chr17:24806675..24806697,+!p2@Zfp598!0.06!4.45!Zfp598;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13213
-|library_id_phase_based=1:CNhs13213
+|library_id_phase_based=2:CNhs13213
 |name=CD41+ megakaryocyte cancer, donor2
 |namespace=
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13213,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.115805429208238,0,0,0,0,-0.00426308786342408,0,0,0,0,0,0,0.0657614857994763,0,0.0400380762665588,0,0,0,0,0,0,0,0,0,0,0,0.428637025286506,0,0,0,0,-0.00547212141618538,-0.0404572308882419,-0.157064096701421,0.416261849969592,-0.984211366477826,-0.269868638010351,0.0800761525331175,0,0,0.0800761525331175,0,0,0,0,0,0,0.0800761525331175,0,0.0140706049696771,0,0,0,0.0800761525331175,-0.0428469550828748,0,-0.0276310978103761,0.944221776819711,0.939222641078982,0,-0.0736150023561545,0.224605882408838,-0.0780148902379651,-0.0627282447876715,0,-0.0780086007519514,-0.107177024667156,-0.109294589365361,0.303709201919046,0,-0.0792384290357143,-0.0853368825167684,0.0710292118590687,-0.0788315948399074,0,0,0,0,0.0400380762665588,0,0.0244324979359035,-0.129692863001108,0.313168415475737,0,0,0,0.0800761525331175,0

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FF:11776-124A3: Difference between revisions

From FANTOM5_SSTAR

Revision as of 09:49, 28 November 2014

CNhs13213

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0