FF:11774-124A1: Difference between revisions

Revision as of 09:48, 28 November 2014

Name:	CD41+ megakaryocyte cancer, donor1
Species:	Mouse (Mus musculus)
Library ID:	CNhs13079
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	megakaryocyte
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3LL-1
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004871

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13079		CAGE		DRX008797		DRR009669

Accession ID Mm9

Library id		BAM		CTSS
CNhs13079		DRZ001094		DRZ002479

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13079

0	0
1	0
10	0
100	0
1000	0
1001	-0.0749
1002	-0.116
1003	-0.175
1004	0
1005	0
1006	-0.143
1007	-0.253
1008	0
1009	-0.19
101	0.118
1010	0
1011	-0.108
1012	0
1013	-0.131
1014	-0.0874
1015	-0.202
1016	-0.442
1017	0
1018	0
1019	0
102	0
1020	0.368
1021	0.564
1022	-0.0704
1023	0
1024	-0.307
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.115
103	-0.0861
1030	0.125
1031	-0.677
1032	-0.287
1033	0.0509
1034	0
1035	0
1036	0.365
1037	0
1038	-0.267
1039	-0.253
104	0
1040	-0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13079

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.64238e-4
MA0003.1	MA0003.1	0.587
MA0004.1	MA0004.1	0.34
MA0006.1	MA0006.1	0.651
MA0007.1	MA0007.1	0.987
MA0009.1	MA0009.1	0.785
MA0014.1	MA0014.1	0.961
MA0017.1	MA0017.1	0.0746
MA0018.2	MA0018.2	0.254
MA0019.1	MA0019.1	0.382
MA0024.1	MA0024.1	2.55182e-5
MA0025.1	MA0025.1	0.413
MA0027.1	MA0027.1	0.48
MA0028.1	MA0028.1	0.00739
MA0029.1	MA0029.1	0.677
MA0030.1	MA0030.1	0.255
MA0031.1	MA0031.1	0.778
MA0035.2	MA0035.2	6.60589e-5
MA0038.1	MA0038.1	0.48
MA0039.2	MA0039.2	0.922
MA0040.1	MA0040.1	0.623
MA0041.1	MA0041.1	0.804
MA0042.1	MA0042.1	0.996
MA0043.1	MA0043.1	0.0666
MA0046.1	MA0046.1	6.01759e-6
MA0047.2	MA0047.2	0.875
MA0048.1	MA0048.1	0.162
MA0050.1	MA0050.1	2.52639e-5
MA0051.1	MA0051.1	7.09848e-4
MA0052.1	MA0052.1	1.33854e-4
MA0055.1	MA0055.1	0.0627
MA0057.1	MA0057.1	0.668
MA0058.1	MA0058.1	0.351
MA0059.1	MA0059.1	0.045
MA0060.1	MA0060.1	0.655
MA0061.1	MA0061.1	0.00606
MA0062.2	MA0062.2	4.5605e-6
MA0065.2	MA0065.2	0.0715
MA0066.1	MA0066.1	0.0973
MA0067.1	MA0067.1	0.721
MA0068.1	MA0068.1	0.726
MA0069.1	MA0069.1	0.372
MA0070.1	MA0070.1	0.351
MA0071.1	MA0071.1	0.604
MA0072.1	MA0072.1	0.932
MA0073.1	MA0073.1	0.841
MA0074.1	MA0074.1	0.669
MA0076.1	MA0076.1	0.034
MA0077.1	MA0077.1	0.402
MA0078.1	MA0078.1	0.605
MA0079.2	MA0079.2	0.0215
MA0080.2	MA0080.2	1.96472e-9
MA0081.1	MA0081.1	0.036
MA0083.1	MA0083.1	0.00593
MA0084.1	MA0084.1	0.48
MA0087.1	MA0087.1	0.315
MA0088.1	MA0088.1	0.183
MA0090.1	MA0090.1	0.0363
MA0091.1	MA0091.1	0.224
MA0092.1	MA0092.1	0.967
MA0093.1	MA0093.1	0.422
MA0099.2	MA0099.2	0.823
MA0100.1	MA0100.1	0.0215
MA0101.1	MA0101.1	0.0123
MA0102.2	MA0102.2	0.695
MA0103.1	MA0103.1	0.647
MA0104.2	MA0104.2	0.151
MA0105.1	MA0105.1	3.98226e-5
MA0106.1	MA0106.1	0.509
MA0107.1	MA0107.1	0.0304
MA0108.2	MA0108.2	0.00179
MA0111.1	MA0111.1	0.841
MA0112.2	MA0112.2	0.00896
MA0113.1	MA0113.1	0.208
MA0114.1	MA0114.1	0.448
MA0115.1	MA0115.1	0.329
MA0116.1	MA0116.1	0.00411
MA0117.1	MA0117.1	0.675
MA0119.1	MA0119.1	0.428
MA0122.1	MA0122.1	0.854
MA0124.1	MA0124.1	0.966
MA0125.1	MA0125.1	0.0469
MA0131.1	MA0131.1	0.565
MA0135.1	MA0135.1	0.0758
MA0136.1	MA0136.1	5.81896e-8
MA0137.2	MA0137.2	0.339
MA0138.2	MA0138.2	0.0157
MA0139.1	MA0139.1	0.492
MA0140.1	MA0140.1	3.23797e-24
MA0141.1	MA0141.1	0.107
MA0142.1	MA0142.1	0.025
MA0143.1	MA0143.1	0.305
MA0144.1	MA0144.1	0.561
MA0145.1	MA0145.1	0.582
MA0146.1	MA0146.1	0.203
MA0147.1	MA0147.1	0.0773
MA0148.1	MA0148.1	0.91
MA0149.1	MA0149.1	0.0296
MA0150.1	MA0150.1	0.00334
MA0152.1	MA0152.1	0.261
MA0153.1	MA0153.1	8.14128e-4
MA0154.1	MA0154.1	0.0104
MA0155.1	MA0155.1	0.332
MA0156.1	MA0156.1	9.2405e-7
MA0157.1	MA0157.1	0.906
MA0159.1	MA0159.1	0.0281
MA0160.1	MA0160.1	0.253
MA0162.1	MA0162.1	0.358
MA0163.1	MA0163.1	1.28917e-4
MA0164.1	MA0164.1	0.415
MA0258.1	MA0258.1	0.0508
MA0259.1	MA0259.1	0.379

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13079

Novel motif	Logo	P-value
1	1	0.0842
10	10	0.0214
100	100	0.544
101	101	0.878
102	102	0.728
103	103	0.00925
104	104	0.952
105	105	0.931
106	106	0.257
107	107	0.92
108	108	0.797
109	109	0.0678
11	11	0.131
110	110	0.0574
111	111	0.021
112	112	0.0484
113	113	0.755
114	114	0.334
115	115	0.626
116	116	0.747
117	117	3.26204e-4
118	118	0.0921
119	119	0.472
12	12	0.729
120	120	0.71
121	121	0.297
122	122	0.938
123	123	0.274
124	124	0.545
125	125	0.103
126	126	0.204
127	127	0.304
128	128	0.287
129	129	0.216
13	13	0.0252
130	130	0.962
131	131	0.866
132	132	0.164
133	133	0.92
134	134	0.218
135	135	0.443
136	136	0.983
137	137	0.214
138	138	0.573
139	139	0.237
14	14	0.92
140	140	0.566
141	141	0.728
142	142	0.464
143	143	0.106
144	144	0.977
145	145	0.0289
146	146	0.898
147	147	0.813
148	148	0.203
149	149	0.324
15	15	0.0409
150	150	0.248
151	151	0.214
152	152	0.577
153	153	0.673
154	154	0.833
155	155	0.183
156	156	2.32464e-53
157	157	0.919
158	158	0.0236
159	159	0.66
160	160	0.601
161	161	0.0282
162	162	0.581
163	163	0.627
164	164	0.0465
165	165	0.409
166	166	0.177
167	167	0.173
168	168	0.896
169	169	0.181
17	17	0.424
18	18	0.117
19	19	0.821
2	2	0.232
20	20	0.0355
21	21	0.336
22	22	0.779
23	23	0.464
24	24	0.452
25	25	0.198
26	26	0.0116
27	27	0.633
28	28	0.35
29	29	0.0183
3	3	0.046
30	30	0.483
31	31	0.807
32	32	0.928
33	33	0.182
34	34	0.984
35	35	0.245
36	36	0.0235
37	37	0.158
38	38	0.976
39	39	0.789
4	4	0.965
40	40	0.179
41	41	0.414
42	42	0.0766
43	43	0.152
44	44	0.321
45	45	0.693
46	46	0.161
47	47	0.135
48	48	0.195
49	49	0.0691
5	5	0.00858
50	50	0.799
51	51	0.874
52	52	0.954
53	53	0.663
54	54	0.936
55	55	0.197
56	56	0.619
57	57	0.259
58	58	0.288
59	59	0.309
6	6	0.713
60	60	0.418
61	61	0.357
62	62	0.115
63	63	0.505
64	64	0.5
65	65	0.944
66	66	0.423
67	67	0.46
68	68	0.0683
69	69	0.871
7	7	0.0814
70	70	0.159
71	71	0.0147
72	72	0.286
73	73	0.25
74	74	0.739
75	75	0.0154
76	76	0.0651
77	77	0.869
78	78	0.0441
79	79	0.704
8	8	0.0231
80	80	0.0401
81	81	0.45
82	82	0.536
83	83	0.225
84	84	0.571
85	85	0.252
86	86	0.555
87	87	0.564
88	88	0.546
89	89	0.828
9	9	0.937
90	90	0.0276
91	91	0.182
92	92	0.313
93	93	0.257
94	94	0.116
95	95	0.0835
96	96	0.129
97	97	0.836
98	98	0.161
99	99	0.712

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13079

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011131 mouse CD41-positive megakaryocyte cancer sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000556 (megakaryocyte)
0002027 (CD9-positive, CD41-positive megakaryocyte cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0011131 (mouse CD41-positive megakaryocyte cancer sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002006 (Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!2.26!182.54!Klf1;;chr2:28477452..28477483,-!p1@Gfi1b!1.99!118.92!Gfi1b;;chr15:103085660..103085681,-!p1@Nfe2!1.95!129.91!Nfe2;;chr4:114732112..114732158,+!p1@Tal1!1.90!164.56!Tal1;;chr11:11584970..11585030,+!p2@Ikzf1!1.88!105.93!Ikzf1;;chr7:122989594..122989626,-!p1@Sox6!1.88!74.95!Sox6;;chrX:7544943..7545001,-!p1@Gata1!1.80!62.29!Gata1;;chr4:135728581..135728668,+!p1@E2f2!1.66!205.20!E2f2;;chr9:51021788..51021802,+!p1@Pou2af1!1.66!52.63!Pou2af1;;chr10:88145766..88145770,-!p1@Spic!1.65!55.96!Spic;;chr15:103085690..103085710,-!p3@Nfe2!1.59!40.97!Nfe2;;chr15:103082088..103082136,-!p2@Nfe2!1.59!37.64!Nfe2;;chr7:122989632..122989668,-!p2@Sox6!1.57!36.31!Sox6;;chr7:51787434..51787448,-!p1@Spib!1.53!46.30!Spib;;chr9:96159147..96159204,+!p2@Tfdp2!1.51!56.96!Tfdp2;;chr4:44723559..44723593,-!p1@Pax5!1.44!26.32!Pax5;;chr13:30841099..30841116,+!p1@Irf4!1.42!38.97!Irf4;;chr1:38721792..38721845,-!p1@Aff3!1.38!28.31!Aff3;;chr8:87225670..87225697,+!p2@Lyl1!1.35!61.63!Lyl1;;chr6:99216488..99216534,-!p2@Foxp1!1.31!53.96!Foxp1;;chr4:87452200..87452229,-!p2@Mllt3!1.27!36.98!Mllt3;;chr10:79884592..79884621,-!p5@Tcf3!1.27!17.65!Tcf3;;chr11:98407264..98407295,-!p1@Ikzf3!1.27!17.65!Ikzf3;;chr4:114729957..114730012,+!p3@Tal1!1.20!14.99!Tal1;;chr8:87225702..87225726,+!p3@Lyl1!1.17!27.98!Lyl1;;chr11:11585912..11585950,+!p6@Ikzf1!1.16!16.99!Ikzf1;;chr4:44723520..44723544,-!p2@Pax5!1.16!13.32!Pax5;;chr8:124806048..124806094,+!p1@Zfpm1!1.15!120.59!Zfpm1;;chr9:96159116..96159130,+!p6@Tfdp2!1.15!16.32!Tfdp2;;chr9:96159225..96159249,+!p5@Tfdp2!1.11!13.32!Tfdp2;;chr11:98407234..98407259,-!p2@Ikzf3!1.11!11.99!Ikzf3;;chr16:92826249..92826325,-!p1@Runx1!1.10!28.65!Runx1;;chr4:135728181..135728203,+!p2@E2f2!1.09!14.99!E2f2;;chr4:114730254..114730276,+!p2@Tal1!1.09!14.32!Tal1;;chr11:11586218..11586285,+!p1@Ikzf1!1.08!35.31!Ikzf1;;chr4:87452180..87452196,-!p3@Mllt3!1.04!19.65!Mllt3;;chr8:124806017..124806040,+!p2@Zfpm1!1.02!105.60!Zfpm1;;chr10:20880629..20880683,-!p1@Myb!1.02!27.98!Myb;;chr6:86619104..86619119,-!p1@Mxd1!1.01!77.28!Mxd1;;chr4:134708451..134708469,+!p1@Runx3!1.01!16.66!Runx3;;chr4:135728473..135728494,+!p5@E2f2!1.01!9.33!E2f2;;chr9:96159133..96159145,+!p9@Tfdp2!1.00!8.99!Tfdp2;;chr4:114732159..114732166,+!p6@Tal1!0.99!8.66!Tal1;;chr7:122989676..122989687,-!p8@Sox6!0.97!8.33!Sox6;;chr5:65203599..65203617,+!p8@Klf3!0.95!13.32!Klf3;;chr13:112476264..112476282,+!p3@Mier3!0.95!11.33!Mier3;;chr7:148452314..148452329,-!p1@Irf7!0.94!55.30!Irf7;;chr2:162880387..162880413,+!p1@Mybl2!0.94!50.30!Mybl2;;chr4:44723633..44723646,-!p3@Pax5!0.94!7.66!Pax5;;chr11:11585678..11585745,+!p5@Ikzf1!0.92!10.99!Ikzf1;;chr7:25917492..25917512,-!p1@Pou2f2!0.91!12.33!Pou2f2;;chr11:120491440..120491474,-!p3@Mafg!0.91!10.66!Mafg;;chr8:123260252..123260264,+!p1@Irf8!0.90!50.63!Irf8;;chr2:91034924..91034946,-!p2@Nr1h3!0.90!8.66!Nr1h3;;chr4:87452236..87452249,-!p9@Mllt3!0.90!7.00!Mllt3;;chr4:114730015..114730042,+!p7@Tal1!0.90!7.00!Tal1;;chr7:20162663..20162678,+!p1@Zfp296!0.89!8.99!Zfp296;;chr15:103085802..103085817,-!p4@Nfe2!0.86!7.99!Nfe2;;chr4:63064364..63064384,-!p1@Akna!0.85!18.65!Akna;;chr10:20880731..20880775,-!p2@Myb!0.85!13.32!Myb;;chr11:16908650..16908690,-!p1@Plek!0.83!37.31!Plek;;chr5:104183477..104183548,+!p6@Aff1!0.83!11.99!Aff1;;chr3:135271185..135271254,-!p4@Nfkb1!0.82!10.66!Nfkb1;;chr11:5420655..5420659,+!p3@Xbp1!0.82!5.66!Xbp1;;chr6:86619130..86619158,-!p2@Mxd1!0.81!84.28!Mxd1;;chr2:162880327..162880385,+!p2@Mybl2!0.81!38.97!Mybl2;;chr2:173044380..173044432,-!p1@Zbp1!0.81!13.66!Zbp1;;chr14:47896467..47896523,-!p1@Wdhd1!0.80!69.62!Wdhd1;;chr2:166868994..166869023,-!p7@Znfx1!0.80!5.33!Znfx1;;chr6:29476690..29476724,+!p1@Irf5!0.79!25.98!Irf5;;chr8:87225329..87225396,+!p1@Lyl1!0.78!20.32!Lyl1;;chr1:87546583..87546595,+!p1@Sp100!0.78!7.33!Sp100;;chr7:56137011..56137041,-!p2@E2f8!0.77!9.99!E2f8;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.75!25.65!C130039O16Rik;;chr11:23980664..23980706,+!p2@Bcl11a!0.75!21.99!Bcl11a;;chr2:166888058..166888105,-!p2@Znfx1!0.75!15.99!Znfx1;;chr17:56970481..56970551,-!p2@Rfx2!0.75!15.66!Rfx2;;chr13:55431084..55431137,-!p1@Mxd3!0.74!38.97!Mxd3;;chr7:56136362..56136400,-!p1@E2f8!0.74!31.98!E2f8;;chr2:38570011..38570034,-!p1@Nr5a1!0.73!4.33!Nr5a1;;chr5:65203575..65203589,+!p11@Klf3!0.72!5.33!Klf3;;chr1:52176406..52176433,+!p2@Stat1!0.71!10.99!Stat1;;chr11:23977565..23977612,+!p5@Bcl11a!0.71!9.66!Bcl11a;;chr11:23978111..23978134,+!p3@Bcl11a!0.71!9.33!Bcl11a;;chr11:98407340..98407359,-!p4@Ikzf3!0.70!4.00!Ikzf3;;chr11:98407142..98407159,-!p5@Ikzf3!0.70!4.00!Ikzf3;;chr7:31206743..31206761,+!p1@Nfkbid!0.67!5.33!Nfkbid;;chr10:80598968..80599012,+!p5@Zbtb7a!0.67!5.00!Zbtb7a;;chr11:98407370..98407395,-!p3@Ikzf3!0.67!3.66!Ikzf3;;chr9:96159210..96159221,+!p10@Tfdp2!0.67!3.66!Tfdp2;;chr17:56970339..56970428,-!p1@Rfx2!0.65!12.33!Rfx2;;chr11:101413151..101413207,-!p1@Brca1!0.64!37.64!Brca1;;chr8:108583550..108583595,+!p2@Nfatc3!0.64!17.65!Nfatc3;;chr15:103083245..103083260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1;;chr17:34169293..34169320,+!p3@Rxrb!0.26!4.33!Rxrb;;chr17:44872561..44872615,-!p1@Runx2!0.26!3.00!Runx2;;chrX:45947746..45947762,-!p2@Zfp280c!0.26!2.66!Zfp280c;;chr17:47874074..47874098,+!p3@Tfeb!0.26!2.33!Tfeb;;chr10:80598209..80598236,+!p4@Zbtb7a!0.26!2.00!Zbtb7a;;chr7:6315994..6316007,+!p2@Zfp78!0.26!1.33!Zfp78;;chr4:32325955..32325971,+!p3@Bach2!0.26!1.33!Bach2;;chr2:17977331..17977360,+!p11@Mllt10!0.26!1.00!Mllt10;;chr17:84587279..84587294,-!p1@Zfp36l2!0.25!169.55!Zfp36l2;;chr5:67698217..67698253,+!p2@Slc30a9!0.25!32.31!Slc30a9;;chr10:80599279..80599353,+!p1@Zbtb7a!0.25!28.65!Zbtb7a;;chr16:4559608..4559681,-!p1@Tfap4!0.25!12.66!Tfap4;;chr3:95238432..95238455,+!p2@Arnt!0.25!8.66!Arnt;;chr5:104121391..104121450,+!p3@Aff1!0.25!7.66!Aff1;;chr10:70700755..70700772,-!p2@Tfam!0.25!7.00!Tfam;;chr5:65194789..65194800,+!p7@Klf3!0.25!3.33!Klf3;;chr5:140267510..140267555,+!p2@Mafk!0.25!3.00!Mafk;;chr1:95651388..95651434,-!p2@Thap4!0.25!3.00!Thap4;;chr1:95651346..95651383,-!p3@Thap4!0.25!3.00!Thap4;;chr18:3337612..3337644,-!p8@Crem!0.25!2.33!Crem;;chr4:63064395..63064410,-!p2@Akna!0.25!2.00!Akna;;chr13:67476665..67476693,-!p2@Zfp456!0.25!1.67!Zfp456;;chrX:137077608..137077619,-!p6@Tsc22d3!0.25!1.33!Tsc22d3;;chr10:13686074..13686090,+!p9@Hivep2!0.25!1.00!Hivep2;;chr1:15795720..15795756,+!p1@Terf1!0.24!45.30!Terf1;;chr7:88138544..88138584,+!p1@Zfp592!0.24!39.31!Zfp592;;chr7:16986536..16986582,+!p1@Zc3h4!0.24!32.31!Zc3h4;;chr2:181194069..181194144,-!p1@Zbtb46!0.24!8.33!Zbtb46;;chr6:131338363..131338383,-!p4@Csda!0.24!6.33!Csda;;chr13:67461490..67461531,-!p1@Zfp595,p1@Zfp953!0.24!5.66!Zfp953;;chr10:79896690..79896746,-!p4@Tcf3!0.24!4.66!Tcf3;;chr7:31742079..31742108,-!p4@LOC100504922,p4@Usf2!0.24!4.00!Usf2;;chr5:138187181..138187192,+!p5@Tsc22d4!0.24!3.33!Tsc22d4;;chr17:46520518..46520571,+!p2@Zfp318!0.24!2.66!Zfp318;;chr11:99092002..99092018,-!p6@Smarce1!0.24!1.67!Smarce1;;chrX:137077682..137077692,-!p5@Tsc22d3!0.24!1.67!Tsc22d3;;chr7:30638614..30638628,-!p2@Zfp940!0.24!1.67!Zfp940;;chrX:7339674..7339688,+!p6@Tfe3!0.24!1.67!Tfe3;;chr12:78063032..78063043,-!p4@Max!0.24!1.33!Max;;chr1:74634786..74634804,-!p5@Zfp142!0.24!1.33!Zfp142;;chr7:19895354..19895369,-!p1@Fosb!0.24!1.33!Fosb;;chr10:41996451..41996462,-!p5@Foxo3!0.24!1.33!Foxo3;;chr8:72356532..72356611,+!p1@Pbx4!0.23!5.66!Pbx4;;chr16:17531086..17531109,-!p3@Thap7!0.23!4.00!Thap7;;chr2:91077034..91077078,-!p2@Ddb2!0.23!2.66!Ddb2;;chr1:133904862..133904893,+!p6@Elk4!0.23!2.33!Elk4;;chr7:19895384..19895399,-!p2@Fosb!0.23!1.33!Fosb;;chr4:114729646..114729665,+!p4@Tal1!0.23!1.33!Tal1;;chr10:44178493..44178520,-!p3@Prdm1!0.23!1.33!Prdm1;;chr11:23978353..23978379,+!p10@Bcl11a!0.23!1.00!Bcl11a;;chr15:103164702..103164778,-!p3@Zfp385a!0.23!1.00!Zfp385a;;chr7:134169357..134169366,-!p18@Maz!0.23!1.00!Maz;;chr10:116661536..116661555,-!p1@Yeats4!0.22!84.94!Yeats4;;chr1:64579394..64579433,+!p1@Creb1!0.22!53.30!Creb1;;chr12:85559785..85559840,-!p1@C130039O16Rik!0.22!19.65!C130039O16Rik;;chr2:72817320..72817399,-!p2@Sp3!0.22!12.33!Sp3;;chr8:72498134..72498156,-!p7@Gatad2a!0.22!5.00!Gatad2a;;chr1:133904901..133904934,+!p3@Elk4!0.22!3.66!Elk4;;chr6:131338278..131338362,-!p2@Csda!0.22!3.66!Csda;;chr2:153475210..153475252,+!p2@Dnmt3b!0.22!3.33!Dnmt3b;;chr1:15795704..15795713,+!p2@Terf1!0.22!3.00!Terf1;;chr7:135020412..135020433,+!p2@Zfp646!0.22!3.00!Zfp646;;chr11:120494669..120494688,-!p2@Mafg!0.22!3.00!Mafg;;chr2:91035197..91035237,-!p1@Nr1h3!0.22!2.33!Nr1h3;;chr13:112476433..112476448,+!p2@Mier3!0.22!2.00!Mier3;;chr8:108583683..108583693,+!p3@Nfatc3!0.22!1.33!Nfatc3;;chr14:79915521..79915539,+!p5@Elf1!0.22!1.00!Elf1;;chr15:103085858..103085863,-!p11@Nfe2!0.22!0.67!Nfe2;;chr7:50817698..50817710,+!p4@Zfp658!0.22!0.67!Zfp658;;chr8:108582687..108582734,+!p4@Nfatc3!0.22!0.67!Nfatc3;;chr5:77524043..77524064,-!p9@Hopx!0.22!0.67!Hopx;;chr7:122989672..122989673,-!p20@Sox6!0.22!0.67!Sox6;;chr6:99216375..99216395,-!p5@Foxp1!0.22!0.67!Foxp1;;chr6:29479308..29479325,+!p3@Irf5!0.22!0.67!Irf5;;chr1:64579145..64579168,+!p6@Creb1!0.22!0.67!Creb1;;chr2:28477422..28477433,-!p2@Gfi1b!0.22!0.67!Gfi1b;;chr4:135736707..135736724,+!p8@E2f2!0.22!0.67!E2f2;;chr3:9250036..9250047,+!p@chr3:9250036..9250047,+!0.22!0.67!Zbtb10;;chr4:118967319..118967330,-!p6@Ybx1!0.22!0.67!Ybx1;;chr11:11590117..11590138,+!p4@Ikzf1!0.22!0.67!Ikzf1;;chr11:98407210..98407221,-!p7@Ikzf3!0.22!0.67!Ikzf3;;chr11:120624106..120624107,+!p13@Hmga1-rs1,p14@Hmga1!0.22!0.67!Hmga1;;chr10:20881239..20881254,-!p5@Myb!0.22!0.67!Myb;;chr10:30375647..30375658,-!p7@Ncoa7!0.22!0.67!Ncoa7;;chr11:100721640..100721658,+!p2@Stat5a!0.22!0.67!Stat5a;;chr11:23670933..23670942,-!p4@Rel!0.22!0.67!Rel;;chr11:62272200..62272221,-!p11@Ncor1!0.22!0.67!Ncor1;;chr10:5734473..5734489,-!p5@Esr1!0.22!0.67!Esr1;;chr17:51971991..51972003,-!p4@Satb1!0.22!0.67!Satb1;;chr17:51972603..51972624,-!p9@Satb1!0.22!0.67!Satb1;;chr17:26978409..26978442,-!p1@Nkx2-5!0.22!0.67!Nkx2-5;;chr17:51972575..51972595,-!p13@Satb1!0.22!0.67!Satb1;;chr16:92826232..92826245,-!p4@Runx1!0.22!0.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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13079
-|library_id_phase_based=1:CNhs13079
+|library_id_phase_based=2:CNhs13079
 |name=CD41+ megakaryocyte cancer, donor1
 |namespace=
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13079,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.080703409017269,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.0670274422876226,0,0.110866109466085,0,0,0,0,0,0,0,0,0,0,0.454288663505105,-0.08149577278593,0,0,0,0,-0.00571112192764523,0.125024589873065,-0.129818330512549,0.619114822231249,-0.984211366477826,-0.269868638010351,0.22173221893217,0,0,0,0,0,0,0,0,0,0.124865908594952,0,-0.0660055475634404,0,0,0,0,-0.0168387920002635,0,-0.108613006514391,0.425786639334928,0.668777851779984,0,-0.117389802908326,-0.0889184384072164,0.0636411761610874,-0.0782547289698169,0,-0.0528219028970289,-0.106814165103399,-0.0416825878506979,0.22173221893217,0,-0.0767063466829997,-0.0327951301573388,0.528754331193943,-0.0788315948399074,0,0,0,0,0,0,0.221094220493488,-0.100874795614081,0.0645443131374917,0,0,0,0.367810303315271,0

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FF:11774-124A1: Difference between revisions

From FANTOM5_SSTAR

Revision as of 09:48, 28 November 2014

CNhs13079

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0