UBERON:0004198: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=comma-shaped body | |name=comma-shaped body | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001285 | |part_of=UBERON:0001285 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | comma-shaped body | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001231(nephron tubule),UBERON:0010532(primitive nephron) |
|---|---|
| develops_from: | UBERON:0004209(renal vesicle) |
| part_of: | UBERON:0001285(nephron) |
Children
| develops from: | UBERON:0004199 (S-shaped body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004198 (comma-shaped body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.87e-64 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_04db49fa62382d17469b3e1f47694edf | p@chr2:120409486..120409492, + |
| 6.87e-64 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_04db49fa62382d17469b3e1f47694edf | p@chr2:120409486..120409492, + |
| 9.62e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_aade058184536394a30887ae716c7570 | p1@ENST00000413103 |
| 9.62e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_aade058184536394a30887ae716c7570 | p1@ENST00000413103 |
| 1.16e-36 | FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_83ccde5f2091b149d15773f589e8bd2c | p@chr17:79426453..79426462, + |
| 1.16e-36 | FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_83ccde5f2091b149d15773f589e8bd2c | p@chr17:79426453..79426462, + |
| 1.31e-36 | FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_d852308b2b44c78f5f252fcabe8057ab | p@chr8:77557753..77557755, - |
| 1.31e-36 | FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_d852308b2b44c78f5f252fcabe8057ab | p@chr8:77557753..77557755, - |
| 5.58e-32 | FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_4e28b393731a04abc7859040cdd87645 | p6@TINAGL1 |
| 5.58e-32 | FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_4e28b393731a04abc7859040cdd87645 | p6@TINAGL1 |
| 1.53e-30 | FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_d7632ea1097ecb60442ca6c34e5ce918 | p9@FURIN |
| 1.53e-30 | FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_d7632ea1097ecb60442ca6c34e5ce918 | p9@FURIN |
| 3.83e-30 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ad32eb0575b028eaf02a4b833bd4dae | p7@LRRN4 |
| 3.83e-30 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ad32eb0575b028eaf02a4b833bd4dae | p7@LRRN4 |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_55ec4e90fed87e669c5925ba08725acb | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_55ec4e90fed87e669c5925ba08725acb | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_55ec4e90fed87e669c5925ba08725acb | p7@OTOF |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_55ec4e90fed87e669c5925ba08725acb | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_55ec4e90fed87e669c5925ba08725acb | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_55ec4e90fed87e669c5925ba08725acb | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_55ec4e90fed87e669c5925ba08725acb | p7@OTOF |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_55ec4e90fed87e669c5925ba08725acb | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_55ec4e90fed87e669c5925ba08725acb | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_55ec4e90fed87e669c5925ba08725acb | p@chr2:26700331..26700340, - |
| 7.96e-27 | FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_df4dd1c19e9b65f890d2f8d1544a7d47 | p@chr10:3477893..3477912, - |
| 7.96e-27 | FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_df4dd1c19e9b65f890d2f8d1544a7d47 | p@chr10:3477893..3477912, - |
| 6.29e-26 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_6c9d99b0176a82b5f41f0a156e837390 | p@chr1:172926077..172926120, - |
| 6.29e-26 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_6c9d99b0176a82b5f41f0a156e837390 | p@chr1:172926077..172926120, - |
| 6.32e-26 | FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_c1e6b3cb6530773c999ac164c351da2e | p5@APLN |
| 6.32e-26 | FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_c1e6b3cb6530773c999ac164c351da2e | p5@APLN |
| 9.89e-26 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_6bc5ca202277363c51466253311917e5 | p@chr2:693380..693398, + |
| 9.89e-26 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_6bc5ca202277363c51466253311917e5 | p@chr2:693380..693398, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_8a4804522375069d79bcd87de83dec17 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_8a4804522375069d79bcd87de83dec17 | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_8a4804522375069d79bcd87de83dec17 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_8a4804522375069d79bcd87de83dec17 | p@chr6:84849252..84849259, + |
| 1.44e-23 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7be | p23@TTC39A |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7be | p10@TRIL |
| 1.44e-23 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7be | p23@TTC39A |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_2bb9e1fc9b9d1d3cfad26862cbe0a7be | p10@TRIL |
| 1.61e-23 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_6ecb08f5925f2ee27b0fd7bbc5e25201 | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_6ecb08f5925f2ee27b0fd7bbc5e25201 | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_6ecb08f5925f2ee27b0fd7bbc5e25201 | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_6ecb08f5925f2ee27b0fd7bbc5e25201 | p@chr7:4051097..4051112, + |
| 1.8e-23 | FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_916ac3aca60177ca01e7308742252c97 | p@chr16:2141529..2141537, + |
| 1.8e-23 | FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_916ac3aca60177ca01e7308742252c97 | p@chr16:2141529..2141537, + |
| 2.92e-22 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_bf7dc4ac8ed860835b07d00288d71b0e | p@chr5:74244100..74244117, + |
| 2.92e-22 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_bf7dc4ac8ed860835b07d00288d71b0e | p@chr5:74244100..74244117, + |
| 5.69e-22 | FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_376e37779d252c9a616652e2650a4c87 | p@chr5:148651758..148651769, - |
| 5.69e-22 | FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_376e37779d252c9a616652e2650a4c87 | p@chr5:148651758..148651769, - |
| 2.9e-21 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_a9f30cb609c822ce61ffabccd5bfa1e3 | p@chr16:86768403..86768437, + |
| 2.9e-21 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_a9f30cb609c822ce61ffabccd5bfa1e3 | p@chr16:86768403..86768437, + |
| 4.78e-21 | FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_ea5270cfd91c77b56a6bf33ef983c3f5 | p@chr17:2076002..2076026, - |
| 4.78e-21 | FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_ea5270cfd91c77b56a6bf33ef983c3f5 | p@chr17:2076002..2076026, - |
| 1.26e-20 | FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_e921240852a7e0be8d139dc2b62b8571 | p3@FAM167B |
| 1.26e-20 | FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_e921240852a7e0be8d139dc2b62b8571 | p3@FAM167B |
| 2.32e-20 | FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_5a58a2117456041655e46de3bcfd01d9 | p@chr11:124628392..124628427, - |
| 2.32e-20 | FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_5a58a2117456041655e46de3bcfd01d9 | p@chr11:124628392..124628427, - |
| 3.42e-20 | FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_06a1599087d6869f4adbe61422c5c693 | p1@ENST00000487339 |
| 3.42e-20 | FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_06a1599087d6869f4adbe61422c5c693 | p1@ENST00000487339 |
| 3.44e-20 | FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_aec9ba842063c5f763395b62286a8019 | p@chr19:47231340..47231383, - |
| 3.44e-20 | FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_aec9ba842063c5f763395b62286a8019 | p@chr19:47231340..47231383, - |
| 3.58e-20 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_f350e88cd7b29eb411b941a9a9a0e956 | p@chr19:1826957..1826984, - |
| 3.58e-20 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_f350e88cd7b29eb411b941a9a9a0e956 | p@chr19:1826957..1826984, - |
| 4.39e-20 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_29e1503170f591decb8dfca43b645d8a | p@chr4:38057595..38057624, - |
| 4.39e-20 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_29e1503170f591decb8dfca43b645d8a | p@chr4:38057595..38057624, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_25c7ccc40f1c2ff71fe4c2710591e7f5 | p@chr2:133426106..133426117, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_25c7ccc40f1c2ff71fe4c2710591e7f5 | p@chr2:133426106..133426117, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_33187ae134dfd7b04af869694ef58e78 | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_33187ae134dfd7b04af869694ef58e78 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_33187ae134dfd7b04af869694ef58e78 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_33187ae134dfd7b04af869694ef58e78 | p@chr9:35753821..35753835, - |
| 8.62e-20 | FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_1f891ac4bb6dec36e7d49edc41452c05 | p@chr4:145568170..145568180, - |
| 8.62e-20 | FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_1f891ac4bb6dec36e7d49edc41452c05 | p@chr4:145568170..145568180, - |
| 1.04e-19 | FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_a99226147684528ac7ac06a6f7c37af5 | p1@WDR87 |
| 1.04e-19 | FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_a99226147684528ac7ac06a6f7c37af5 | p1@WDR87 |
| 1.15e-19 | FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_c3a870966a7653cca475804c51aed788 | p@chr14:91270270..91270281, - |
| 1.15e-19 | FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_c3a870966a7653cca475804c51aed788 | p@chr14:91270270..91270281, - |
| 2.44e-19 | FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_60174c8e3024bcf62797f8769c39ea36 | p6@ACVRL1 |
| 2.44e-19 | FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_60174c8e3024bcf62797f8769c39ea36 | p6@ACVRL1 |
| 3.27e-19 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_ff94aa15406865b507f37eb4b37c4073 | p@chr3:43538305..43538325, - |
| 3.27e-19 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_ff94aa15406865b507f37eb4b37c4073 | p@chr3:43538305..43538325, - |
| 4.64e-19 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_0a9a9d579adf972114be1c8caee0fc28 | p@chr17:171147..171161, + |
| 4.64e-19 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_0a9a9d579adf972114be1c8caee0fc28 | p@chr17:171147..171161, + |
| 5.39e-19 | FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_f4db11f9b758808b035458374c651606 | p@chr1:22211913..22211920, + |
| 5.39e-19 | FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_f4db11f9b758808b035458374c651606 | p@chr1:22211913..22211920, + |
| 1.99e-18 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b7694aa7f31665af5c5b2c46897cb8c8 | p7@HOXA10 |
| 1.99e-18 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b7694aa7f31665af5c5b2c46897cb8c8 | p7@HOXA10 |
| 2.69e-18 | FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_fb982e4cf7b281f85f42e633d83967e9 | p3@TINAGL1 |
| 2.69e-18 | FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_fb982e4cf7b281f85f42e633d83967e9 | p3@TINAGL1 |
| 4.1e-18 | FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_308c23f0fb583810fec06015d200fde8 | p17@CTGF |
| 4.1e-18 | FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_308c23f0fb583810fec06015d200fde8 | p17@CTGF |
| 5.7e-18 | FFCP PHASE1:Hg19::chr11:940729..940745,+#_c323e64f882ad268a93504602e7fdfc6 | p5@AP2A2 |
| 5.7e-18 | FFCP PHASE2:Hg19::chr11:940729..940745,+#_c323e64f882ad268a93504602e7fdfc6 | p5@AP2A2 |
| 6.5e-18 | FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_0a8ee1f570db63a1923a3ca60e56cec1 | p@chr19:42007093..42007107, - |
| 6.5e-18 | FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_0a8ee1f570db63a1923a3ca60e56cec1 | p@chr19:42007093..42007107, - |
| 6.99e-18 | FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_38f06971605966329dc91570487d55d7 | p@chrX:128781853..128781866, - |
| 6.99e-18 | FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_38f06971605966329dc91570487d55d7 | p@chrX:128781853..128781866, - |
| 1.24e-17 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_6e122e40e031e31498fa9e8c9cdecffc | p@chr16:86604624..86604648, + |
| 1.24e-17 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_6e122e40e031e31498fa9e8c9cdecffc | p@chr16:86604624..86604648, + |
