UBERON:0001242: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=intestinal mucosa | |name=intestinal mucosa | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000160;;UBERON:0001262 | |part_of=UBERON:0000160;;UBERON:0001262 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | intestinal mucosa | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369] | ||
| Xrefs: |
| ||
| Synonyms: |
"bowel mucosa" EXACT [OBOL:automatic] "bowel mucosa of organ" EXACT [OBOL:automatic] "bowel mucous membrane" EXACT [OBOL:automatic] "bowel organ mucosa" EXACT [OBOL:automatic] "intestine mucosa" EXACT [] "intestine mucosa of organ" EXACT [OBOL:automatic] "intestine mucous membrane" EXACT [OBOL:automatic] "intestine organ mucosa" EXACT [OBOL:automatic] "mucosa of bowel" EXACT [OBOL:automatic] "mucosa of intestine" EXACT [] "mucosa of organ of bowel" EXACT [OBOL:automatic] "mucosa of organ of intestine" EXACT [OBOL:automatic] "mucous membrane of bowel" EXACT [OBOL:automatic] "mucous membrane of intestine" EXACT [OBOL:automatic] "organ mucosa of bowel" EXACT [OBOL:automatic] "organ mucosa of intestine" EXACT [OBOL:automatic] | ||
| Alt_id: | UBERON:FMA_15695-MA_0001537 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004786(gastrointestinal system mucosa) |
|---|---|
| part_of: | UBERON:0000160(intestine),UBERON:0001262(wall of intestine) |
Children
| is a: | UBERON:0001204 (mucosa of small intestine) |
|---|---|
| derives from: | FF:0011436 (mouse intestinal mucosa- adult sample) |
| part of: | UBERON:0000333 (intestinal gland),UBERON:0001204 (mucosa of small intestine),UBERON:0001277 (intestinal epithelium),UBERON:0001983 (crypt of Lieberkuhn) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
... further results Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001242 (intestinal mucosa), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_1a78842ff5e07c158c2f734d85401345 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_1a78842ff5e07c158c2f734d85401345 | p@chr9:35801527..35801540, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_437179a44f9874ffa2b27f327d38dad5 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_437179a44f9874ffa2b27f327d38dad5 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_437179a44f9874ffa2b27f327d38dad5 | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_437179a44f9874ffa2b27f327d38dad5 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_437179a44f9874ffa2b27f327d38dad5 | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_437179a44f9874ffa2b27f327d38dad5 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_437179a44f9874ffa2b27f327d38dad5 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_437179a44f9874ffa2b27f327d38dad5 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_437179a44f9874ffa2b27f327d38dad5 | p@chr6:22919616..22919625, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_af606c5fbc3049df7636e3131ac612f2 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_af606c5fbc3049df7636e3131ac612f2 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_af606c5fbc3049df7636e3131ac612f2 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_af606c5fbc3049df7636e3131ac612f2 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_af606c5fbc3049df7636e3131ac612f2 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_af606c5fbc3049df7636e3131ac612f2 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_af606c5fbc3049df7636e3131ac612f2 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_af606c5fbc3049df7636e3131ac612f2 | p@chrX:21849506..21849512, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_08e041465bafdae357a0159bcc8d5f96 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_08e041465bafdae357a0159bcc8d5f96 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_08e041465bafdae357a0159bcc8d5f96 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_08e041465bafdae357a0159bcc8d5f96 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_08e041465bafdae357a0159bcc8d5f96 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_08e041465bafdae357a0159bcc8d5f96 | p@chr2:28340361..28340371, + |
| 3.83e-60 | FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_ad4c50c5c8832a535da41b2ceb37182d | p@chr16:30055801..30055806, + |
| 3.83e-60 | FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_ad4c50c5c8832a535da41b2ceb37182d | p@chr16:30055801..30055806, + |
| 3.16e-55 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_01a00cbea33bfa3c729ec43181372185 | p@chr3:122215917..122215967, - |
| 3.16e-55 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_01a00cbea33bfa3c729ec43181372185 | p@chr3:122215917..122215967, - |
| 1.47e-53 | FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_dc35a3a1796f146b3323289db3134de9 | p@chr18:75457242..75457248, + |
| 1.47e-53 | FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_dc35a3a1796f146b3323289db3134de9 | p@chr18:75457242..75457248, + |
| 1.5e-53 | FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_c3075341fa6130f6c3a61f46b4f18dce | p@chr5:135442349..135442362, - |
| 1.5e-53 | FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_c3075341fa6130f6c3a61f46b4f18dce | p@chr5:135442349..135442362, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_9f38342e1e62a2ed764e8d400190b587 | p@chr8:122335239..122335244, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_9f38342e1e62a2ed764e8d400190b587 | p@chr8:122335239..122335244, + |
| 7.2e-52 | FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_03f3170fd37321c51836c5510533691d | p@chr18:61795043..61795050, - |
| 7.2e-52 | FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_03f3170fd37321c51836c5510533691d | p@chr18:61795043..61795050, - |
| 1.66e-51 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_21434ea07047025999aec659213aa0d4 | p4@Leng9 |
| 1.66e-51 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_21434ea07047025999aec659213aa0d4 | p4@Leng9 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:68155058..68155064,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr12:68155058..68155064, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:32790605..32790619,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr13:32790605..32790619, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:30499737..30499761, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128419359..128419367, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr1:118658073..118658082, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174108..157174136,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr4:157174108..157174136, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:171088092..171088113,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:171088092..171088113, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:89797154..89797172,+#_bb3440edd530cc3abd32f3c66fe0424c | p9@STEAP2 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128260156..128260173, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr4:71222797..71222807, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:24797832..24797838, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128807259..128807281,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128259602..128259609, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:138064518..138064531,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:138064518..138064531, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:24797750..24797759, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chrX:138909080..138909093,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chrX:138909080..138909093, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:48703799..48703838,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr13:48703799..48703838, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174108..157174136,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr4:157174108..157174136, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:127681013..127681042, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:159306961..159306975,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr2:159306961..159306975, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr13:32790605..32790619, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:5491056..5491061, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:139373728..139373733, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr18:39550015..39550034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr15:45950558..45950561, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:71222797..71222807,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr4:71222797..71222807, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr5:57619538..57619575, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127449395..127449424,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:127449395..127449424, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:8389087..8389116, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:128418747..128418756, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:22850283..22850310,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr14:22850283..22850310, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:159306961..159306975,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr2:159306961..159306975, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:107667666..107667673,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr8:107667666..107667673, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:53252911..53252918,-#_bb3440edd530cc3abd32f3c66fe0424c | p106@TCF4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:163302780..163302789,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr2:163302780..163302789, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87232406..87232409,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:87232406..87232409, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148165064..148165071,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:148165064..148165071, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:87049573..87049608, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:148164872..148164919,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:148164872..148164919, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:77730114..77730120,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr12:77730114..77730120, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:141499716..141499722,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:141499716..141499722, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:127711472..127711475,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr2:127711472..127711475, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:71987749..71987774,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr5:71987749..71987774, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:28720966..28720970,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr18:28720966..28720970, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:171088092..171088113,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:171088092..171088113, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:24726466..24726472,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr10:24726466..24726472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:66354424..66354472,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr3:66354424..66354472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:32790683..32790693,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr13:32790683..32790693, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:5491081..5491106,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr6:5491081..5491106, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_bb3440edd530cc3abd32f3c66fe0424c | p@chr21:37143915..37143924, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_bb3440edd530cc3abd32f3c66fe0424c | p@chr7:30499737..30499761, + |
