UBERON:0001231: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=nephron tubule | |name=nephron tubule | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001285 | |part_of=UBERON:0001285 | ||
Latest revision as of 17:16, 12 September 2014
| Name: | nephron tubule | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] | ||
| Xrefs: |
| ||
| Synonyms: |
"kidney tubule" EXACT [GAID:433] "renal tubule" BROAD [] "tubulus renalis" EXACT [] "uriniferous tubule" RELATED [MA:0000377] | ||
| Comments: | note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA | ||
| Alt_id: |
UBERON:0004210 UBERON:FMA_15627-ZFA_0001287 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004211(nephron epithelium),UBERON:0009773(renal tubule) |
|---|---|
| develops_from: | UBERON:0003918(kidney mesenchyme) |
| part_of: | UBERON:0001285(nephron) |
Children
| is a: | UBERON:0004198 (comma-shaped body),UBERON:0007685 (region of nephron tubule) |
|---|---|
| part of: | UBERON:0004134 (proximal tubule),UBERON:0004810 (nephron tubule epithelium),UBERON:0007685 (region of nephron tubule),CL:1000494 (nephron tubule epithelial cell),CL:1000507 (kidney tubule cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001231 (nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.05e-87 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_c4110c4d35eac421f8a296a8d25ace6a | p@chr2:693380..693398, + |
| 1.05e-87 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_c4110c4d35eac421f8a296a8d25ace6a | p@chr2:693380..693398, + |
| 1.72e-83 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_3c86aba35d219e51c32550da53ac45bd | p4@MEGF11 |
| 1.72e-83 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_3c86aba35d219e51c32550da53ac45bd | p4@MEGF11 |
| 2.2e-74 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_d1464d3f93d8365a9a6fd55c80f93a7f | p7@HOXA10 |
| 2.2e-74 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_d1464d3f93d8365a9a6fd55c80f93a7f | p7@HOXA10 |
| 7.63e-66 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_be8fb99b4601f63af5917c3e83a2b56e | p@chr1:1100457..1100470, + |
| 7.63e-66 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_be8fb99b4601f63af5917c3e83a2b56e | p@chr1:1100457..1100470, + |
| 6.44e-62 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_ae612df91c2319781b93d2919af37beb | p4@PAX2 |
| 6.44e-62 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_ae612df91c2319781b93d2919af37beb | p4@PAX2 |
| 5.84e-60 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_052f7db58c0423c68bebf4ca1ca7d016 | p@chr18:3456189..3456200, + |
| 5.84e-60 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_052f7db58c0423c68bebf4ca1ca7d016 | p@chr18:3456189..3456200, + |
| 6.18e-60 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_0dd116d50084994b32c1f6bb417f50c6 | p3@PAX2 |
| 6.18e-60 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_0dd116d50084994b32c1f6bb417f50c6 | p3@PAX2 |
| 4.45e-59 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_4413121c3f27783168bca7cd5260d21d | p6@LRRN4 |
| 4.45e-59 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_4413121c3f27783168bca7cd5260d21d | p6@LRRN4 |
| 3.49e-58 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_34ec834abd12d9a7885b04ae55d05ef5 | p@chr5:74244100..74244117, + |
| 3.49e-58 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_34ec834abd12d9a7885b04ae55d05ef5 | p@chr5:74244100..74244117, + |
| 3.91e-56 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_1daae175225e44038eadd08b2d4dcce6 | p2@AB527789 |
| 3.91e-56 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_1daae175225e44038eadd08b2d4dcce6 | p2@AB527789 |
| 3.83e-55 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_da1cb35cad4d58e583f6c17197c965ab | p@chr16:86604624..86604648, + |
| 3.83e-55 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_da1cb35cad4d58e583f6c17197c965ab | p@chr16:86604624..86604648, + |
| 3.51e-54 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_c4def0bcb583974432c20b1ebd418541 | p@chr16:86768403..86768437, + |
| 3.51e-54 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_c4def0bcb583974432c20b1ebd418541 | p@chr16:86768403..86768437, + |
| 6.09e-53 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_79879646fb8b152de1a3961b339eafac | p2@CLDN6 |
| 6.09e-53 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_79879646fb8b152de1a3961b339eafac | p2@CLDN6 |
| 2.79e-52 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_5bff23bb502b65683cccb8c8bd4b2316 | p1@ENST00000418041, p1@ENST00000443104 |
| 2.79e-52 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_5bff23bb502b65683cccb8c8bd4b2316 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.61e-50 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_8abe077f61c79f788a3112d9a06d49b5 | p@chr7:7606139..7606151, - |
| 1.61e-50 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_8abe077f61c79f788a3112d9a06d49b5 | p@chr7:7606139..7606151, - |
| 1.96e-50 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_2a39dd5cb73d81caeed4d14ed4bdbab5 | p3@HNF1B |
| 1.96e-50 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_2a39dd5cb73d81caeed4d14ed4bdbab5 | p3@HNF1B |
| 1.73e-49 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_988e97ac4d8a1773386e8b732551258d | p@chr7:140227349..140227360, - |
| 1.73e-49 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_988e97ac4d8a1773386e8b732551258d | p@chr7:140227349..140227360, - |
| 2.61e-49 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_cd1398d43eb3c3e6d9804bb6ed50683d | p16@HOXA10 |
| 2.61e-49 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_cd1398d43eb3c3e6d9804bb6ed50683d | p16@HOXA10 |
| 3.13e-49 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_335a0bc4ca23eb2da77f3abf0b4a9c84 | p2@B3GALT5 |
| 3.13e-49 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_335a0bc4ca23eb2da77f3abf0b4a9c84 | p2@B3GALT5 |
| 4.07e-49 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_a70caf0a53bd2287e503fedc443261f0 | p4@AIF1L |
| 4.07e-49 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_a70caf0a53bd2287e503fedc443261f0 | p4@AIF1L |
| 1.12e-47 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_e5b929c1adabf0f9a58aabc7fb48fa83 | p@chr7:140227303..140227330, - |
| 1.12e-47 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_e5b929c1adabf0f9a58aabc7fb48fa83 | p@chr7:140227303..140227330, - |
| 1.23e-44 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_6092df2d57dc90a6f6af5a785cb87938 | p3@LRRN4 |
| 1.23e-44 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_6092df2d57dc90a6f6af5a785cb87938 | p3@LRRN4 |
| 3.62e-44 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_048d41eff041e1bf5acbe52f8aa38b60 | p@chr21:46826248..46826282, - |
| 3.62e-44 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_048d41eff041e1bf5acbe52f8aa38b60 | p@chr21:46826248..46826282, - |
| 3.06e-43 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_1d5eb1f13a12903f0e3728d6187104f9 | p2@LRRN4 |
| 3.06e-43 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_1d5eb1f13a12903f0e3728d6187104f9 | p2@LRRN4 |
| 1.81e-42 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_13f507da756636947df326c7b969768a | p@chr15:85403302..85403304, + |
| 1.81e-42 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_13f507da756636947df326c7b969768a | p@chr15:85403302..85403304, + |
| 1.82e-42 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_d081416e4f9f76eda895aa1ade1d97c2 | p@chr7:98453821..98453843, - |
| 1.82e-42 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_d081416e4f9f76eda895aa1ade1d97c2 | p@chr7:98453821..98453843, - |
| 2.77e-42 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_302d98130cfe0afacee19afd3fc3e13e | p7@LRRN4 |
| 2.77e-42 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_302d98130cfe0afacee19afd3fc3e13e | p7@LRRN4 |
| 7.5e-42 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_444c719523c17888c2880dba44af08ba | p2@PAX2 |
| 7.5e-42 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_444c719523c17888c2880dba44af08ba | p2@PAX2 |
| 3.59e-41 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_42aac8cbb6f52bf3bb3a0ee40755fd50 | p16@TJP2 |
| 3.59e-41 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_42aac8cbb6f52bf3bb3a0ee40755fd50 | p16@TJP2 |
| 9.39e-41 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_40f6def42390e802a4fe636f8e5213f5 | p1@ENST00000413103 |
| 9.39e-41 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_40f6def42390e802a4fe636f8e5213f5 | p1@ENST00000413103 |
| 1.7e-40 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_fc36ee9b2e47d59ddbf5aa80b1bc2efa | p5@LRRN4 |
| 1.7e-40 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_fc36ee9b2e47d59ddbf5aa80b1bc2efa | p5@LRRN4 |
| 2.9e-40 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_5c16691074a9e660ac5ef398f739bdfb | p2@PLA2G2F |
| 2.9e-40 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_5c16691074a9e660ac5ef398f739bdfb | p2@PLA2G2F |
| 8.58e-40 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_a21ca6063064df595e57c6c7a8cbf83e | p3@AIF1L |
| 8.58e-40 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_a21ca6063064df595e57c6c7a8cbf83e | p3@AIF1L |
| 1.21e-39 | FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_84faacf39c0fc3f2fd8340d409861640 | p6@GALNT14 |
| 1.21e-39 | FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_84faacf39c0fc3f2fd8340d409861640 | p6@GALNT14 |
| 3.08e-39 | FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_cacf2af2737c62a7965c63fa976f97de | p4@AB527789 |
| 3.08e-39 | FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_cacf2af2737c62a7965c63fa976f97de | p4@AB527789 |
| 7.42e-37 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_e8fc537ab14b783976f0c3cdcd5f2042 | p4@DCDC2 |
| 7.42e-37 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_e8fc537ab14b783976f0c3cdcd5f2042 | p4@DCDC2 |
| 1.29e-36 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_f5ad39f41c215bbca6cb57f1af0b58c4 | p@chr2:693362..693373, + |
| 1.29e-36 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_f5ad39f41c215bbca6cb57f1af0b58c4 | p@chr2:693362..693373, + |
| 1.36e-36 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_ed8abd2002136d091354aad3f6e20ed6 | p1@HOXD4 |
| 1.36e-36 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_ed8abd2002136d091354aad3f6e20ed6 | p1@HOXD4 |
| 6.21e-36 | FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_0ff727f150dd082d197b6c70ca474c82 | p@chr2:176982078..176982095, + |
| 6.21e-36 | FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_0ff727f150dd082d197b6c70ca474c82 | p@chr2:176982078..176982095, + |
| 2.64e-35 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_769ee45ecf95399e126d8e4cf6024e81 | p1@AB527789 |
| 2.64e-35 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_769ee45ecf95399e126d8e4cf6024e81 | p1@AB527789 |
| 3.85e-35 | FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_cad114a1bcec149637e65282c9d49b9e | p3@SULT1C4 |
| 3.85e-35 | FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_cad114a1bcec149637e65282c9d49b9e | p3@SULT1C4 |
| 8.14e-35 | FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_25849f4b4ea23371abed9d20d1bdbf31 | p4@SIGLEC15 |
| 8.14e-35 | FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_25849f4b4ea23371abed9d20d1bdbf31 | p4@SIGLEC15 |
| 1.65e-34 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_56e33be3e180fbe34508b6954f74df6c | p1@ENST00000444849 |
| 1.65e-34 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_56e33be3e180fbe34508b6954f74df6c | p1@ENST00000444849 |
| 1.14e-33 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_1667ac35cb868f157d3a50a60e43e293 | p@chr17:171147..171161, + |
| 1.14e-33 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_1667ac35cb868f157d3a50a60e43e293 | p@chr17:171147..171161, + |
| 1.52e-33 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_cdc3215dcac2cad7bf3204d21a58510f | p2@C14orf105 |
| 1.52e-33 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_cdc3215dcac2cad7bf3204d21a58510f | p2@C14orf105 |
| 1.8e-33 | FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_2d56403e9121d2631c885d997922570f | p5@GALNT14 |
| 1.8e-33 | FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_2d56403e9121d2631c885d997922570f | p5@GALNT14 |
| 2.35e-33 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_8ea0f6f4a91cf2d85e9c1b5d2446e06c | p1@CLDN16 |
| 2.35e-33 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_8ea0f6f4a91cf2d85e9c1b5d2446e06c | p1@CLDN16 |
| 4.12e-33 | FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_c21618c2f5854d01a50dfb3c62cade5e | p@chr17:36065029..36065045, - |
| 4.12e-33 | FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_c21618c2f5854d01a50dfb3c62cade5e | p@chr17:36065029..36065045, - |
| 8.12e-33 | FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_58858de91242ab5bbe1293e78f46ff6f | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 8.12e-33 | FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_58858de91242ab5bbe1293e78f46ff6f | p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387 |
| 1.25e-32 | FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_8ffd1da7156bb40c9bb981f7d4ca69cf | p@chr22:30653574..30653606, - |
| 1.25e-32 | FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_8ffd1da7156bb40c9bb981f7d4ca69cf | p@chr22:30653574..30653606, - |
