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{{UBERON
{{UBERON
|id=UBERON:0004708
|alt_id=UBERON:0009872
|name=limb/fin
|namespace=
|def=
|xref=VSAO:0000067
|is_a=UBERON:0000026;;UBERON:0004120
|synonym="girdle-associated appendage" EXACT [UBERON:cjm];;"jointed paired lateral appendage" NARROW [UBERON:cjm];;"limb or fin" EXACT [UBERON:cjm];;"paired appendage" EXACT [VSAO:0000067];;"pectoral or pelvic appendage" EXACT [UBERON:cjm];;"pelvic/pectoral appendage" EXACT [UBERON:cjm]
|comment=this class is the union of the classes limb, pectoral fin and pelvic fin.
|comment=this class is the union of the classes limb, pectoral fin and pelvic fin.
|alt_id=UBERON:0009872
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0004357
|develops_from=UBERON:0004357
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004708
|is_a=UBERON:0000026
|is_obsolete=
|located_in=
|located_in=
|name=limb/fin
|namespace=
|obo_creation_date=
|part_of=UBERON:0010707
|part_of=UBERON:0010707
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="girdle-associated appendage" EXACT [UBERON:cjm];;"jointed paired lateral appendage" NARROW [UBERON:cjm];;"limb or fin" EXACT [UBERON:cjm];;"paired appendage" EXACT [VSAO:0000067];;"pectoral or pelvic appendage" EXACT [UBERON:cjm];;"pelvic/pectoral appendage" EXACT [UBERON:cjm]
|union_of=
|xref=VSAO:0000067
}}
}}

Revision as of 11:30, 12 September 2014

Name:limb/fin
Xrefs:
links:
VSAO:0000067
Synonyms: "girdle-associated appendage" EXACT [UBERON:cjm]
"jointed paired lateral appendage" NARROW [UBERON:cjm]
"limb or fin" EXACT [UBERON:cjm]
"paired appendage" EXACT [VSAO:0000067]
"pectoral or pelvic appendage" EXACT [UBERON:cjm]
"pelvic/pectoral appendage" EXACT [UBERON:cjm]
Comments:this class is the union of the classes limb, pectoral fin and pelvic fin.
Alt_id: UBERON:0009872

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000026(appendage)
develops_from:UBERON:0004357(paired limb/fin bud)
part_of:UBERON:0010707(appendage girdle complex)



Children

is a:UBERON:0002101 (limb),UBERON:0004709 (pelvic appendage),UBERON:0004710 (pectoral appendage)
part of:UBERON:0004375 (bone of free limb or fin),UBERON:0010538 (paired limb/fin segment),UBERON:0011582 (paired limb/fin skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004708 (limb/fin), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04abap@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04abap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04abap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04abap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_71a075807a91a482b21804c8ffd04abap@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04abap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_71a075807a91a482b21804c8ffd04abap@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04abap@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04abap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_71a075807a91a482b21804c8ffd04abap@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04abap@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04abap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_71a075807a91a482b21804c8ffd04abap@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_71a075807a91a482b21804c8ffd04abap@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_71a075807a91a482b21804c8ffd04abap@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_71a075807a91a482b21804c8ffd04abap@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_71a075807a91a482b21804c8ffd04abap@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_71a075807a91a482b21804c8ffd04abap@chr10:97176812..97176813, +
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_e3c8b45cc6747dabee7e5357a647ed96p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_e3c8b45cc6747dabee7e5357a647ed96p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_e3c8b45cc6747dabee7e5357a647ed96p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_e3c8b45cc6747dabee7e5357a647ed96p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_e3c8b45cc6747dabee7e5357a647ed96p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_e3c8b45cc6747dabee7e5357a647ed96p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_e3c8b45cc6747dabee7e5357a647ed96p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_e3c8b45cc6747dabee7e5357a647ed96p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_e3c8b45cc6747dabee7e5357a647ed96p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_e3c8b45cc6747dabee7e5357a647ed96p@chr2:179399371..179399376, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_74223db40b267e117de1f1fb2483c152p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_74223db40b267e117de1f1fb2483c152p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_74223db40b267e117de1f1fb2483c152p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_74223db40b267e117de1f1fb2483c152p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_74223db40b267e117de1f1fb2483c152p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_74223db40b267e117de1f1fb2483c152p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_74223db40b267e117de1f1fb2483c152p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_74223db40b267e117de1f1fb2483c152p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_74223db40b267e117de1f1fb2483c152p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_74223db40b267e117de1f1fb2483c152p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_74223db40b267e117de1f1fb2483c152p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_74223db40b267e117de1f1fb2483c152p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_74223db40b267e117de1f1fb2483c152p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_74223db40b267e117de1f1fb2483c152p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_74223db40b267e117de1f1fb2483c152p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_74223db40b267e117de1f1fb2483c152p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_74223db40b267e117de1f1fb2483c152p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_74223db40b267e117de1f1fb2483c152p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_74223db40b267e117de1f1fb2483c152p@chr18:8608021..8608050, +

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