FFCP PHASE1:Hg19::chrX:123480395..123480419,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4068 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |||
|TSSclassifier=strong | |||
|UniProt=A8MYF2 | |||
|association_with_transcript=0bp_to_ENST00000394475,ENST00000470647_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_SH2D1A_5end | |||
|id=chrX:123480395..123480419,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.41e-35!140;CL:0002087!5.91e-30!119;CL:0000037!5.66e-26!172;CL:0000566!5.66e-26!172;CL:0000988!8.46e-26!182;CL:0000084!9.70e-26!25;CL:0000827!9.70e-26!25;CL:0002031!4.44e-25!124;CL:0000838!3.40e-23!52;CL:0000542!1.73e-22!53;CL:0000051!1.73e-22!53;CL:0002032!1.19e-21!165;CL:0000837!1.19e-21!165;CL:0000791!1.49e-21!18;CL:0000789!1.49e-21!18;CL:0002420!1.49e-21!18;CL:0002419!1.49e-21!18;CL:0000790!1.49e-21!18;CL:0000625!2.27e-14!11;CL:0000766!1.81e-10!76;CL:0002057!2.21e-09!42;CL:0000860!2.85e-08!45;CL:0002194!6.60e-08!63;CL:0000576!6.60e-08!63;CL:0000040!6.60e-08!63;CL:0000559!6.60e-08!63;CL:0000624!7.99e-08!6;CL:0002009!2.07e-07!65;CL:0000080!3.10e-07!6;CL:0000839!8.49e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000084;5.50e-36;25!CL:0000791;9.71e-32;18!CL:0000789;9.71e-32;18!CL:0002419;9.71e-32;18!CL:0000625;7.44e-21;11!CL:0000542;4.27e-13;53!CL:0000624;5.05e-11;6!CL:0000094;6.43e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.93e-36,25;CL:0000827,5.93e-36,25;CL:0000791,1.05e-31,18;CL:0000789,1.05e-31,18;CL:0002420,1.05e-31,18;CL:0002419,1.05e-31,18;CL:0000790,1.05e-31,18;CL:0000838,9.54e-23,52;CL:0000542,3.88e-22,53;CL:0000051,3.88e-22,53;CL:0000625,7.48e-21,11;CL:0000738,7.80e-21,136;CL:0002087,6.26e-18,115;CL:0000988,1.49e-16,177;CL:0000037,1.28e-15,168;CL:0002031,1.08e-13,120;CL:0002032,1.16e-12,161;CL:0000837,1.16e-12,161;CL:0000624,5.38e-11,6;CL:0000094,6.51e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;9.71e-32;18!CL:0000051;4.27e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.23e-18!102;UBERON:0003061!8.23e-18!102;UBERON:0007023!3.29e-17!115;UBERON:0002193!1.92e-16!112;UBERON:0000178!6.04e-16!15;UBERON:0000179!6.04e-16!15;UBERON:0000463!6.04e-16!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.04e-23;15!UBERON:0000179;3.04e-23;15!UBERON:0000463;3.04e-23;15!UBERON:0002390;2.81e-17;32!UBERON:0002193;2.68e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.14e-23,15;UBERON:0000179,3.14e-23,15;UBERON:0000463,3.14e-23,15;UBERON:0002390,1.31e-11,98;UBERON:0003061,1.31e-11,98;UBERON:0002193,2.57e-11,108;UBERON:0004177,2.72e-09,7;UBERON:0005057,2.72e-09,7;UBERON:0002370,1.73e-08,4;UBERON:0005058,1.73e-08,4;UBERON:0009113,1.73e-08,4;UBERON:0003295,1.73e-08,4;UBERON:0005562,1.73e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.821005894499457,0.708397031823113,7.86728553697808,34.9284752268464,5.72819656269481,0,0,0,41.8322883133629,0.426507697462265,1.76160263600908,8.30993112797816,7.62068900386538,8.02940221648652,2.46307021663917,9.71680998056939,3.09090681161024,0,0.377875943688809,0.485168122375632,0.232429036905685,1.23350366406548,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,1.03423704220986,2.5819387343353,0,0.188242339542605,0.545812300115692,1.12361742222542,0.612167784741805,0.641858054152187,0,0.329851300186716,0.598390972864896,0.426224750532694,1.16083695451434,0,0,0.251248665256743,0.521482918420201,0.868755378820466,0.605399502633369,1.10483290796269,0.632924774881769,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0.764546456250458,1.32171328579026,15.1337312005015,0.263384084775077,31.0801436779856,40.0870978004148,41.1202997999018,40.9606913707161,19.2294137313818,28.406868344084,40.9136129656614,79.7698871297843,50.3776101781972,57.1557448025743,82.8659823120948,65.070390420643,58.9168844446248,66.5973513644888,75.4435548555366,82.883682520225,43.5962495696458,45.4819407752512,47.0409857122396,71.6115045848618,57.0998535466863,60.4784304049429,79.9542226781629,95.2510588829049,112.63743751716,115.955149422702,72.4266322764087,82.0394177499822,131.177262879963,105.839431663676,94.4297196459204,46.9743711713627,47.0694744578973,41.1301307027149,0,0,0,0,0,0,0,0,0,0,0.175669571386252,1.63723844372141,0,0,0.324547393654683,0.348259474598534,0,1.43094374583205,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,11.6334079244498,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,74.6072638010759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1421374383171,40.1942750811931,31.697253504349,29.3905553080624,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.0152039184331,16.6099934630335,28.0693477023059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.60044461320525,0,0,0,0,27.9096185077693,30.585488285695,22.2162402997923,33.5906803395482,37.8453291239299,22.0480925805524,22.1412889267627,23.0006301125338,0,0,0,0,0,79.4654390201786,53.7266539096131,0,3.83010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0.73254089635947,0,8.69258397364331,0,0,0.593929361665277,0,0,0,0,0,0,1.59398390600856,6.3545300572164,0,0,0.369254416383208,0,0,0,0,2.46608514092334,23.948309234694,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,1.07730361905316,0,0,0,0,0.638002319463839,0,1.06606955203727,105.259097141609,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.76915129006678,1.83309043480088,11.2678028898636,14.5805447956873,15.4544485268074,0.337005664903385,3.21031058919516,0,0,0,0,0.789168805698781,1.20990716048664,0,3.47526187956684,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,1.35784623083787,0,0,0,0,0.126621591911757,0,0,2.56143593687223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0.687481272035051,0,0,0,0.223171457441873,0.403100834920358,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0,0,6.83439440433246,1.72924735609633,3.72815149812476,10.9156524798629,0.197611631897944,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,1.32864840313363,0,0,0,0,25.9983614611409,0,40.6427351999525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0,0,1.56986185701028,0,0,0,0,0,0.571812353413251,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,1.54348316215889,1.31135736302374,0,0,0,0,0.297046400327086,0,0,8.08261694626741,5.47892047775406,0,0,0,0,1.46067277649303,3.66983426723633,0,0,0,0,7.40637576721561,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0.20686599172379,1.91910583710883,6.66580408098473,202.163287786699,166.856832027266,0,0.25458863311266,0.606351566874658,0.870866991587845,0.342233301085281,12.9315941788008,1.72133292942423,0,0,0,0,0,0,1.1001729976458,0,0,24.7566766116962,0 | |||
|short_description=p1@SH2D1A | |||
}} |
Revision as of 06:51, 23 January 2014
Short description: | p1@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH2D1A_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000394475, ENST00000470647_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | A8MYF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.93e-36 | 25 |
pro-T cell | 5.93e-36 | 25 |
mature alpha-beta T cell | 1.05e-31 | 18 |
alpha-beta T cell | 1.05e-31 | 18 |
immature T cell | 1.05e-31 | 18 |
mature T cell | 1.05e-31 | 18 |
immature alpha-beta T cell | 1.05e-31 | 18 |
lymphoid lineage restricted progenitor cell | 9.54e-23 | 52 |
lymphocyte | 3.88e-22 | 53 |
common lymphoid progenitor | 3.88e-22 | 53 |
CD8-positive, alpha-beta T cell | 7.48e-21 | 11 |
leukocyte | 7.80e-21 | 136 |
nongranular leukocyte | 6.26e-18 | 115 |
hematopoietic cell | 1.49e-16 | 177 |
hematopoietic stem cell | 1.28e-15 | 168 |
hematopoietic lineage restricted progenitor cell | 1.08e-13 | 120 |
hematopoietic oligopotent progenitor cell | 1.16e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.16e-12 | 161 |
CD4-positive, alpha-beta T cell | 5.38e-11 | 6 |
granulocyte | 6.51e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 3.14e-23 | 15 |
haemolymphatic fluid | 3.14e-23 | 15 |
organism substance | 3.14e-23 | 15 |
hematopoietic system | 1.31e-11 | 98 |
blood island | 1.31e-11 | 98 |
hemolymphoid system | 2.57e-11 | 108 |
hemopoietic organ | 2.72e-09 | 7 |
immune organ | 2.72e-09 | 7 |
thymus | 1.73e-08 | 4 |
hemolymphoid system gland | 1.73e-08 | 4 |
thymic region | 1.73e-08 | 4 |
pharyngeal gland | 1.73e-08 | 4 |
thymus primordium | 1.73e-08 | 4 |